mRNA_H-canaliculatus_F_contig12074.1799.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12074.1799.1
Unique NamemRNA_H-canaliculatus_F_contig12074.1799.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12074.1799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12074contigH-canaliculatus_F_contig12074:1270..1969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size690
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12074.1799.1prot_H-canaliculatus_F_contig12074.1799.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12074 1422..1968 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.7648249-UTR-H-canaliculatus_F_contig12074:1269..14211622928917.7648249-UTR-H-canaliculatus_F_contig12074:1269..1421Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12074 1270..1421 -
1696845612.5343478-UTR-H-canaliculatus_F_contig12074:1269..14211696845612.5343478-UTR-H-canaliculatus_F_contig12074:1269..1421Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12074 1270..1421 -
1622928917.7992175-UTR-H-canaliculatus_F_contig12074:1968..19691622928917.7992175-UTR-H-canaliculatus_F_contig12074:1968..1969Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12074 1969..1969 -
1696845612.563249-UTR-H-canaliculatus_F_contig12074:1968..19691696845612.563249-UTR-H-canaliculatus_F_contig12074:1968..1969Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12074 1969..1969 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.77556-CDS-H-canaliculatus_F_contig12074:1421..14801622928917.77556-CDS-H-canaliculatus_F_contig12074:1421..1480Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12074 1422..1480 -
1696845612.546352-CDS-H-canaliculatus_F_contig12074:1421..14801696845612.546352-CDS-H-canaliculatus_F_contig12074:1421..1480Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12074 1422..1480 -
1622928917.7853596-CDS-H-canaliculatus_F_contig12074:1490..19681622928917.7853596-CDS-H-canaliculatus_F_contig12074:1490..1968Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12074 1491..1968 -
1696845612.5545306-CDS-H-canaliculatus_F_contig12074:1490..19681696845612.5545306-CDS-H-canaliculatus_F_contig12074:1490..1968Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12074 1491..1968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12074.1799.1

>prot_H-canaliculatus_F_contig12074.1799.1 ID=prot_H-canaliculatus_F_contig12074.1799.1|Name=mRNA_H-canaliculatus_F_contig12074.1799.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=179bp
MWEGLHPLAQEAFMLEHPQRRSTRYSCPVLREPKMHYGMLLFESKNEAHK
AKLIAVHMKVWGARARRNARGDFDNGEHSAVAEGSTAADGGVEKHLTRGV
DEGEGTNNNSSGDEGVCCFAFNLEIGREKFVLVEDPAGESEGGGDNSSTN
NDDSSSSSSTATAATTTAATTAAAMKLS*
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mRNA from alignment at H-canaliculatus_F_contig12074:1270..1969-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12074.1799.1 ID=mRNA_H-canaliculatus_F_contig12074.1799.1|Name=mRNA_H-canaliculatus_F_contig12074.1799.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=700bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12074:1270..1969- (Hapterophycus canaliculatus Oshoro5f female)
GATGTGGGAAGGCTTGCACCCACTTGCGCAGGAAGCCTTCATGCTTGAAC
ACCCCCAGAGGAGGAGCACCCGCTACTCCTGCCCCGTGCTGAGGGAACCG
AAGATGCATTATGGCATGCTTTTGTTTGAGTCCAAGAACGAGGCACACAA
GGCGAAGTTGATTGCTGTGCACATGAAGGTTTGGGGAGCCAGAGCACGGA
GGAACGCCAGGGGCGATTTCGACAACGGTGAGCATTCAGCAGTCGCAGAG
GGATCCACAGCAGCAGACGGGGGAGTGGAGAAACACCTAACAAGGGGTGT
CGATGAAGGCGAGGGCACCAACAACAACAGCTCCGGAGATGAGGGAGTTT
GCTGTTTCGCTTTCAACCTAGAAATAGGGAGAGAGAAATTCGTGCTGGTG
GAGGATCCGGCCGGCGAAAGTGAAGGGGGTGGTGACAACAGCAGCACGAA
CAACGACGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCA
GCAACAACAACGGCAGCAACAACGGCAGCAGCGATGAAACTTTCGTGACG
TGGGATGAAGCACGAAAGTACCCCTTCGACCGGGGAAAGCGGTGTCCGCC
GAGAATGGGAACGGAGGGAAACGCTGAGCTTGGCGTTGCACGCCCTTTCG
ACCGTGGCAAGAACCACGGTGTTGGGGCGGTAGGTGGAGCGTGACAAGAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12074:1270..1969-

>mRNA_H-canaliculatus_F_contig12074.1799.1 ID=mRNA_H-canaliculatus_F_contig12074.1799.1|Name=mRNA_H-canaliculatus_F_contig12074.1799.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1074bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12074:1270..1969- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGGAAGGCTTGCACCCACTTGCGCAGGAAGCCTTCATGCTTGAACA
CCCCCAGAGGAGGAGCACCCGCTACTCCTGCCCCGTGCTGAGGGAACCGA
AGATGCATTATGGCATGCTTTTGTTTGAGTCCAAGAACGAGGCACACAAG
GCGAAGTTGATTGCTGTGCACATGAAGGTTTGGGGAGCCAGAGCACGGAG
GAACGCCAGGGGCGATTTCGACAACGGTGAGCATTCAGCAGTCGCAGAGG
GATCCACAGCAGCAGACGGGGGAGTGGAGAAACACCTAACAAGGGGTGTC
GATGAAGGCGAGGGCACCAACAACAACAGCTCCGGAGATGAGGGAGTTTG
CTGTTTCGCTTTCAACCTAGAAATAGGGAGAGAGAAATTCGTGCTGGTGG
AGGATCCGGCCGGCGAAAGTGAAGGGGGTGGTGACAACAGCAGCACGAAC
AACGACGACAGCAGCAGCAGCAGCAGCAATGTGGGAAGGCTTGCACCCAC
TTGCGCAGGAAGCCTTCATGCTTGAACACCCCCAGAGGAGGAGCACCCGC
TACTCCTGCCCCGTGCTGAGGGAACCGAAGATGCATTATGGCATGCTTTT
GTTTGAGTCCAAGAACGAGGCACACAAGGCGAAGTTGATTGCTGTGCACA
TGAAGGTTTGGGGAGCCAGAGCACGGAGGAACGCCAGGGGCGATTTCGAC
AACGGTGAGCATTCAGCAGTCGCAGAGGGATCCACAGCAGCAGACGGGGG
AGTGGAGAAACACCTAACAAGGGGTGTCGATGAAGGCGAGGGCACCAACA
ACAACAGCTCCGGAGATGAGGGAGTTTGCTGTTTCGCTTTCAACCTAGAA
ATAGGGAGAGAGAAATTCGTGCTGGTGGAGGATCCGGCCGGCGAAAGTGA
AGGGGGTGGTGACAACAGCAGCACGAACAACGACGACAGCAGCAGCAGCA
GCAGCACAGCAACAGCAGCAACAACAACGGCAGCAACAACGGCAGCAGCG
ATGAAACTTTCGTGACAGCAACAGCAGCAACAACAACGGCAGCAACAACG
GCAGCAGCGATGAAACTTTCGTGA
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