mRNA_H-canaliculatus_F_contig12074.1797.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12074.1797.1
Unique NamemRNA_H-canaliculatus_F_contig12074.1797.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12074.1797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12074contigH-canaliculatus_F_contig12074:8..1090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size228
Cds size153
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12074.1797.1prot_H-canaliculatus_F_contig12074.1797.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12074 35..1042 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.5109205-UTR-H-canaliculatus_F_contig12074:7..341622928917.5109205-UTR-H-canaliculatus_F_contig12074:7..34Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12074 8..34 +
1696845612.450818-UTR-H-canaliculatus_F_contig12074:7..341696845612.450818-UTR-H-canaliculatus_F_contig12074:7..34Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12074 8..34 +
1622928917.6543956-UTR-H-canaliculatus_F_contig12074:1042..10901622928917.6543956-UTR-H-canaliculatus_F_contig12074:1042..1090Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12074 1043..1090 +
1696845612.485515-UTR-H-canaliculatus_F_contig12074:1042..10901696845612.485515-UTR-H-canaliculatus_F_contig12074:1042..1090Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12074 1043..1090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.527002-CDS-H-canaliculatus_F_contig12074:34..941622928917.527002-CDS-H-canaliculatus_F_contig12074:34..94Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12074 35..94 +
1696845612.4614325-CDS-H-canaliculatus_F_contig12074:34..941696845612.4614325-CDS-H-canaliculatus_F_contig12074:34..94Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12074 35..94 +
1622928917.640058-CDS-H-canaliculatus_F_contig12074:949..10421622928917.640058-CDS-H-canaliculatus_F_contig12074:949..1042Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12074 950..1042 +
1696845612.4755733-CDS-H-canaliculatus_F_contig12074:949..10421696845612.4755733-CDS-H-canaliculatus_F_contig12074:949..1042Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12074 950..1042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12074.1797.1

>prot_H-canaliculatus_F_contig12074.1797.1 ID=prot_H-canaliculatus_F_contig12074.1797.1|Name=mRNA_H-canaliculatus_F_contig12074.1797.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=51bp
MLPCGLFNHTFPDHDSRIPNILDKPSGQHKHHYYLVGQKRIRLQCRNHVW
*
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mRNA from alignment at H-canaliculatus_F_contig12074:8..1090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12074.1797.1 ID=mRNA_H-canaliculatus_F_contig12074.1797.1|Name=mRNA_H-canaliculatus_F_contig12074.1797.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1083bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12074:8..1090+ (Hapterophycus canaliculatus Oshoro5f female)
CTCCGCACCCGCCTGGAACATTCTCAGATGCTTCCTTGCGGCCTCTTCAA
CCATACATTCCCTGATCATGACTCGCGTATACCCAACAGCCCCCCTGCTC
GTGACATGTTCAGGGAAGATCAATCAACCAAAACAATTCAAATCACCTCC
TGATACCTTAGAAATCTCCAACTCACATACACAATACACCTCTTCCATGC
TTTATCGTACCCACAAATCCATCGTCTCACGCTTCTGAACCAAATCCCAA
ACATCGTTCCTCCATCTCAATCAAATCCCAAACATCGTTCCGCCATTTCA
ATGAAATCAATAAATCACCGCAATCTCTCAATCCTCCATGTTCATCCACT
GTCCATAAAATGTACCATCGCAGTCAATCAGCCCTTCATATTTTGTCAGT
AAAACAAACCTCCGCAATCCGTAATTTCTTCATCCACGATCACCAAAACA
AACCATCACCATCTCTCAATTTCATTCGACCGAACTGCCTTTCTCTACAA
GTATGAATTGCCAGAATCAAATTGCACGAACGCATGACAACGTAACTAGA
CGTCAACCCAATCTCAGGGGCAGCGTCGAACCCAAAGAGCAAAGGTACGG
TAGTTAGAATGTTCGTTGATCGTCATTCAACAATTGCACCGAGACAAATA
AACACTGCCCTTCCAATTTCTGGTGAGCGTATGTGTGCATGACCCTGGAA
TTTAATCTCCCCCCCCTAGGATCTTGCATACATACATGCAGCAATTGTTC
AGTGCGTTCCACAAACATTTCAATGCCAGCATTCTGTTGGCACCGAACCG
TTAGCATGACATTTCCGACCGATCGATGTGAACACAATCTGAGGTCTACC
TTATCCCATTGTGGTGCAGAAAGGCCCCCCCAAGTCGTGCGGAGGAGTCC
ATTTCAGGCGCTCTCGACTGCATTGTAGCATTGAATCCACTGATACTAGA
TAAACCTTCTGGACAACACAAACATCACTATTATTTAGTCGGACAGAAGA
GAATAAGATTGCAGTGCAGGAATCACGTATGGTAGTATTAGTATTCATCA
ACCTAAGAACAATCACCCACAAAGGAACCAACA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12074:8..1090+

>mRNA_H-canaliculatus_F_contig12074.1797.1 ID=mRNA_H-canaliculatus_F_contig12074.1797.1|Name=mRNA_H-canaliculatus_F_contig12074.1797.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=306bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12074:8..1090+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTCCTTGCGGCCTCTTCAACCATACATTCCCTGATCATGACTCGCG
TATACCCAACATGCTTCCTTGCGGCCTCTTCAACCATACATTCCCTGATC
ATGACTCGCGTATACCCAACATACTAGATAAACCTTCTGGACAACACAAA
CATCACTATTATTTAGTCGGACAGAAGAGAATAAGATTGCAGTGCAGGAA
TCACGTATGGTAGATACTAGATAAACCTTCTGGACAACACAAACATCACT
ATTATTTAGTCGGACAGAAGAGAATAAGATTGCAGTGCAGGAATCACGTA
TGGTAG
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