mRNA_H-canaliculatus_F_contig1204.1783.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1204.1783.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE) HSP 1 Score: 190 bits (483), Expect = 1.530e-57 Identity = 86/128 (67.19%), Postives = 105/128 (82.03%), Query Frame = 1
Query: 1 GTFYCRGTDIGGDCDELRIQSRSSNDYHEIRGHGGNLYFENTIVTSWDTDRREPQEEYKNGRSYLNCLSERLTGTTC---AKDDMGECRMDIINSEIAYLGFDDAESYGITWK--------VRGFCED 351
G FYC+GT GGDC++LRIQS S+D+HE+RGHGG+LYFE+TIVTSWDT +EPQE Y+ GRS+LNC+SE+LTG C AK++MGECRMDIINSEIAYLG+ D+ESYG+TWK VRGFC+D
Sbjct: 52 GVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKD 179
BLAST of mRNA_H-canaliculatus_F_contig1204.1783.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 200 bits (508), Expect = 1.560e-57 Identity = 87/120 (72.50%), Postives = 106/120 (88.33%), Query Frame = 1
Query: 1 GTFYCRGTDIGGDCDELRIQSRSSNDYHEIRGHGGNLYFENTIVTSWDTDRREPQEEYKNGRSYLNCLSERLTGTTC---AKDDMGECRMDIINSEIAYLGFDDAESYGITWKVRGFCED 351
G FYC+GT GGDC++LRIQS S+D+HE+RGHGG+LYFE+TIVTSWDT +EPQE Y+NGRS+LNC+SE+LTG C AK++MGECRMDIINSEIAYLG+ D+ESYG+TWKVRGFC+D
Sbjct: 503 GVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKD 622
BLAST of mRNA_H-canaliculatus_F_contig1204.1783.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 186 bits (472), Expect = 9.370e-56 Identity = 80/118 (67.80%), Postives = 101/118 (85.59%), Query Frame = 1
Query: 7 FYCRGTDIGGDCDELRIQSRSSNDYHEIRGHGGNLYFENTIVTSWDTDRREPQEEYKNGRSYLNCLSERLTGTTC---AKDDMGECRMDIINSEIAYLGFDDAESYGITWKVRGFCED 351
FYC G++ GGDCDELRIQS +D++E+RGHGG++YF +T+VTSWDT ++PQE Y+ GRS+LNC+SE+LTG TC AK+D GECRMDIINSE+ Y+GF DAESYG+TWKVRGFC+D
Sbjct: 33 FYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKD 150
BLAST of mRNA_H-canaliculatus_F_contig1204.1783.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 186 bits (473), Expect = 2.000e-54 Identity = 81/118 (68.64%), Postives = 98/118 (83.05%), Query Frame = 1
Query: 7 FYCRGTDIGGDCDELRIQSRSSNDYHEIRGHGGNLYFENTIVTSWDTDRREPQEEYKNGRSYLNCLSERLTGTTC---AKDDMGECRMDIINSEIAYLGFDDAESYGITWKVRGFCED 351
FYCRG+ IGGDCDELRIQS D+HE+R HGG++YFE+TIVTSWDT + PQ Y GRS+LNC+SE+LTG C A+++MGECRMDIINSEI YLG+ D+ESYG+TWKVRGFC+D
Sbjct: 142 FYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKD 259
BLAST of mRNA_H-canaliculatus_F_contig1204.1783.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 182 bits (461), Expect = 2.600e-53 Identity = 81/117 (69.23%), Postives = 99/117 (84.62%), Query Frame = 1
Query: 4 TFYCRGTDIGGDCDELRIQSRSSNDYHEIRGHGGNLYFENTIVTSWDTDRREPQEEYKNGRSYLNCLSERLTGT-TCAKDDMGECRMDIINSEIAYLGFDDAESYGITWKVRGFCED 351
T YCRG +GG+C ELRI+S S +D+ EIRGHGGNLYFE+TIVTSWD D R+PQE YK+GRS++ C+SE LTG TCA ++MGECRMDII+SE+ YLG+D +E+YGITWKVRGFC D
Sbjct: 66 TLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTCAINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 182
BLAST of mRNA_H-canaliculatus_F_contig1204.1783.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 180 bits (457), Expect = 1.490e-52 Identity = 80/127 (62.99%), Postives = 102/127 (80.31%), Query Frame = 1
Query: 7 FYCRGTDIGGDCDELRIQSRSSNDYHEIRGHGGNLYFENTIVTSWDTDRREPQEEYKNGRSYLNCLSERLTGTTC---AKDDMGECRMDIINSEIAYLGFDDAESYGITWKVR---------GFCED 351
FYC G++ GGDCDELRIQS +D++E+RGHGG++YF +T+VTSWDT ++PQE Y+ GRS+LNC+SE+LTG TC AK+DMGECRMDIINSE+ Y+GF D+ESYG+TWKVR GFC+D
Sbjct: 78 FYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKD 204
BLAST of mRNA_H-canaliculatus_F_contig1204.1783.1 vs. uniprot
Match: D7FZV0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV0_ECTSI) HSP 1 Score: 169 bits (429), Expect = 1.680e-52 Identity = 76/109 (69.72%), Postives = 93/109 (85.32%), Query Frame = 1
Query: 28 IGGDCDELRIQSRSSNDYHEIRGHGGNLYFENTIVTSWDTDRREPQEEYKNGRSYLNCLSERLTGT-TCAKDDMGECRMDIINSEIAYLGFDDAESYGITWKVRGFCED 351
+GG+C ELRI+S S +D+ EIRGHGGNLYFE+TIVTSWD D R+PQE YK GRS++ C+SE LTG TCA ++MGECRMDII+SE+ YLG+D +E+YGITWKVRGFC D
Sbjct: 3 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKGGRSFIRCVSEVLTGEDTCAINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 111
BLAST of mRNA_H-canaliculatus_F_contig1204.1783.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 136 bits (343), Expect = 6.190e-35 Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 1
Query: 19 GTDIGGDCDELRIQSRSSNDYHEIRGHGGNLYFENTIVTSWDTDRREPQEEYKNGRSYLNCLSERLTGT--TC---AKDDMGECRMDIINSEIAYLGFDDAESYGITWKVRGFCEDE 354
G D GGD LRIQS S DY+EIRGHGG+L F +T VTSWDTD ++ YK RS++ C+SE L TC A + MGECRMDII SE+ +G+D AESYGI+WKVRG+C ++
Sbjct: 462 GPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSED 578
BLAST of mRNA_H-canaliculatus_F_contig1204.1783.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 128 bits (322), Expect = 1.210e-33 Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 1
Query: 4 TFYCRGTDIGGDCDELRIQSRSSNDYHEIRGHGGNLYFENTIVTSWDTDRREPQEEYKNGRSYLNCLSERLTGT--TC---AKDDMGECRMDIINSEIAYLGFDDAESYGITWKVRGFCEDE 354
T GT GGD DELR+ S +++ Y +R HGG+L F T V SWDT P E+ +GRSY++ +SE +T TC AK+ MGE RMDI NSEI YLGF D+ESYG+TWKVRGFC+D+
Sbjct: 119 TLKVYGTGEGGDADELRLLS-TTDTYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDK 239
BLAST of mRNA_H-canaliculatus_F_contig1204.1783.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 131 bits (329), Expect = 1.390e-33 Identity = 68/122 (55.74%), Postives = 82/122 (67.21%), Query Frame = 1
Query: 4 TFYCRGTDIGGDCDELRIQSRSSNDYHEIRGHGGNLYFENTIVTSWDTDRREPQEEYKNGRSYLNCLSERLTGT--TC---AKDDMGECRMDIINSEIAYLGFDDAESYGITWKVRGFCEDE 354
T GTD GGD DELR+ S S Y +R HGG+L F T V SWDT P E+ +GRSY++ +SE +T TC AK+ MGE RMDI NSEI YLGF D+ESYG+TWKVRGFC+D+
Sbjct: 120 TLKVYGTDEGGDADELRLLSTSET-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDK 240 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1204.1783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1204.1783.1 >prot_H-canaliculatus_F_contig1204.1783.1 ID=prot_H-canaliculatus_F_contig1204.1783.1|Name=mRNA_H-canaliculatus_F_contig1204.1783.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=119bp GTFYCRGTDIGGDCDELRIQSRSSNDYHEIRGHGGNLYFENTIVTSWDTDback to top mRNA from alignment at H-canaliculatus_F_contig1204:18527..20608- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1204.1783.1 ID=mRNA_H-canaliculatus_F_contig1204.1783.1|Name=mRNA_H-canaliculatus_F_contig1204.1783.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2082bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1204:18527..20608- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1204:18527..20608- >mRNA_H-canaliculatus_F_contig1204.1783.1 ID=mRNA_H-canaliculatus_F_contig1204.1783.1|Name=mRNA_H-canaliculatus_F_contig1204.1783.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=714bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1204:18527..20608- (Hapterophycus canaliculatus Oshoro5f female)back to top |