mRNA_H-canaliculatus_F_contig12039.1781.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12039.1781.1
Unique NamemRNA_H-canaliculatus_F_contig12039.1781.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12039.1781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12039contigH-canaliculatus_F_contig12039:195..2555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size351
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12039.1781.1prot_H-canaliculatus_F_contig12039.1781.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12039 197..2431 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928915.0503294-UTR-H-canaliculatus_F_contig12039:194..1961622928915.0503294-UTR-H-canaliculatus_F_contig12039:194..196Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12039 195..196 -
1696845611.2690835-UTR-H-canaliculatus_F_contig12039:194..1961696845611.2690835-UTR-H-canaliculatus_F_contig12039:194..196Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12039 195..196 -
1622928915.1210546-UTR-H-canaliculatus_F_contig12039:2431..25551622928915.1210546-UTR-H-canaliculatus_F_contig12039:2431..2555Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12039 2432..2555 -
1696845611.299012-UTR-H-canaliculatus_F_contig12039:2431..25551696845611.299012-UTR-H-canaliculatus_F_contig12039:2431..2555Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12039 2432..2555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928915.06602-CDS-H-canaliculatus_F_contig12039:196..3211622928915.06602-CDS-H-canaliculatus_F_contig12039:196..321Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12039 197..321 -
1696845611.277953-CDS-H-canaliculatus_F_contig12039:196..3211696845611.277953-CDS-H-canaliculatus_F_contig12039:196..321Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12039 197..321 -
1622928915.1032162-CDS-H-canaliculatus_F_contig12039:2331..24311622928915.1032162-CDS-H-canaliculatus_F_contig12039:2331..2431Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12039 2332..2431 -
1696845611.2885058-CDS-H-canaliculatus_F_contig12039:2331..24311696845611.2885058-CDS-H-canaliculatus_F_contig12039:2331..2431Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12039 2332..2431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12039.1781.1

>prot_H-canaliculatus_F_contig12039.1781.1 ID=prot_H-canaliculatus_F_contig12039.1781.1|Name=mRNA_H-canaliculatus_F_contig12039.1781.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=75bp
MRVRDHRTQRCNLSAVFTGPANGELLGNGHLTPARKLTGATDTSGEERSW
SQECGGEERICFSPFISAKPTVGL*
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mRNA from alignment at H-canaliculatus_F_contig12039:195..2555-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12039.1781.1 ID=mRNA_H-canaliculatus_F_contig12039.1781.1|Name=mRNA_H-canaliculatus_F_contig12039.1781.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2361bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12039:195..2555- (Hapterophycus canaliculatus Oshoro5f female)
GGTCACAGCAGCAGCTGGGCACTTTCGACAGCCATACATGCAGAGGTTGT
CAGCCTAAGGAATAGGAGCCGGGGCAGTGTTATGTGCCTTATGTCGAAGG
CGTCGCGGGTGGGGAGTGAGAAGCATGCGCGTGCGTGACCACCGCACGCA
GCGGTGTAACCTCTCCGCAGTCTTCACGGGACCGGCGAACGGCGAACTGC
TTGGAAACGGACATCTAACCCCTGGTGAGCGTGTTCTCTTTCATGCTTTG
TGTGCCTCGAAGGCGCTGACCAATGCATATAGCCTTCAGAACTGAAGTGC
CTTTGGGGGGTGGAGAAGTTTTGCGGCTGCCGCTACGCTGCGATTACACA
TCTTGCAGTTTTTCTGTTTCTCTAAATCATACGTCAGTTTTTAATTCATC
AACGGACACTTTCATGCCTCATGAACAGGTAGGTAGGTGCGAATTGGCAA
AATTGGCCGATATTCGCGCGGTTTCTTTCACTGTGAAATAAATCTGACAT
CAAAGCCAACCACTCTGTTGCGAAAAGGGCTTTGCATGGATACTCTAGTT
TGTTCCTGCCCAGACGAAGTTACGCATGGTTCGAGTGTGAACATATAGAC
TTGATTGAGATGGAGGACGTGGTAACCATGGTATGGGTATGTACACACAC
AATTTTTGAAGTCAAAAGCATTTATTTCTCGGCAAGATACTCTTTACTCT
TTCCTCACAACGACTTATTTCCCTGGATTGTGCGGGAAGTAGAATTCCTA
ATTCCAGGTAGCTTGTACAGCAGTACGAAGAGTTTCCTCCACCAGCTTGA
CGAAGCGATCAATACGACACATGCTCTCAGTGACAATTCTCCAATCTTTG
CCTCTCACGTGGAGCATTAGATACCCTTACTCTGCGATTCACTGGTCGAG
TAAGTGCCACCGTCAGTCAGCTGCTATCCTACATCTTCTGTTAACACGAG
TTACGTTTTTTATTTTGCTTCTGTCTTGGGCCCATGGGTCTTTCTTTCTG
GTGGTGTTGCCGCTTTGCCTAGCCTTCAGTCGAAAGGGCAATCATCTGAC
TTCCTGCTATTTCTTGTGAAATGTTGTCGGCTGGGGTTAATGGTCTACGT
CGGCTATACCAAATATTTACAAGTACCATAGACAACAGTATTTCTCTTTT
CTTGCGCAACGCTTCGCTGAGGAATGGACGGTAAGAAGCCAGTCGATCGT
GCGACCTTGTGATTCGACTTATTCGTTCAGACACAAGGCCGGGCTGCAGC
TAGTGGAATTATTTGCGAAATGAGATACTCGGCCAGCGCATTGCCCAAAA
GGGAACAACGTGGTATGCGGGGAATGTGCGTATTTTTAGGCGCAGGAGAC
CTCAGCCTTACATCAGCTCAGCAAAAAAATCGAGATCAGCCTCGTTTTGG
ATCTTTGTCTGGCTTTTCCCGCCCGTTATCGCGCCACCTCCGTCAGCCAC
ATGTCACCGAGTGCTCTGTCGACGGAGGTGTATTTGAAGTTTTAACGATC
AAGGTTTGCCTTGTGAGTGAACGATCAAGGTTTGCCTTGTGAGTGAGCAG
GCAAGCTCCGGTAGGTCGGCAGGAACTATTTTTCATTTCCTCCAGTCATT
CAACCAAAGCAGCAGGTCTCGAGTCGATGGAAGACTCGAAGTTATTTTAC
TATCTGATACAGTATTCGAAGACCCATTTCATTTCATTTTCTTGTGTGTT
TGGAAATGCATGTAAAGTTTGTCCTTGCTGAAGTTTAAGTCTTGGGCGGT
GCTTGATTGAGTTTGGGGGATAGAAATTAACGACTGATTGCCCATGTACA
CCGCGCTGTCGAGCTTTGTAAGCTGAAGGAAGACATTTGGGGACATTGGC
AAGCAGCTCTGGGTGGAATGCCAGGGACATGCCATGAGACGCCACAGATG
TGCTAACGCTCTCCGTGTAAGTAGAGACGGTCGACTTGGGCCTTTCGTTG
CGTCCAGGAGCAAGGTGTCAGTTAGTTGGTGCTTCGTCTACAAAACAAGG
ATGGGAGATGATTGCCACTGGTTTCCCACAGAACTCTTCCGCGCGGGCGC
TTTCGTCAGTTCTGGCTATTTGCTACTCGATTTCGTGTTTCTCTTTCCCC
TTTGCGACGGACGTATCGCTGTTCGGGATCTGTTGTGAGTTTCACGCACA
AATCATTTTGCGCGAGAAAGAAACGTTTACTTATCCTCGGCACTGCCGTG
ATTATCTTTCACTTTTTTGTTTCGCAATGTGCAGCCCGCAAGCTGACCGG
TGCTACGGACACCAGTGGCGAGGAAAGGAGTTGGAGCCAGGAATGTGGTG
GCGAAGAGAGAATATGTTTTTCTCCCTTCATTTCAGCGAAGCCTACCGTG
GGTTTGTGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12039:195..2555-

>mRNA_H-canaliculatus_F_contig12039.1781.1 ID=mRNA_H-canaliculatus_F_contig12039.1781.1|Name=mRNA_H-canaliculatus_F_contig12039.1781.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=450bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12039:195..2555- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCGTGCGTGACCACCGCACGCAGCGGTGTAACCTCTCCGCAGTCTT
CACGGGACCGGCGAACGGCGAACTGCTTGGAAACGGACATCTAACCCCTG
ATGCGCGTGCGTGACCACCGCACGCAGCGGTGTAACCTCTCCGCAGTCTT
CACGGGACCGGCGAACGGCGAACTGCTTGGAAACGGACATCTAACCCCTG
CCCGCAAGCTGACCGGTGCTACGGACACCAGTGGCGAGGAAAGGAGTTGG
AGCCAGGAATGTGGTGGCGAAGAGAGAATATGTTTTTCTCCCTTCATTTC
AGCGAAGCCTACCGTGGGTTTGTGACCCGCAAGCTGACCGGTGCTACGGA
CACCAGTGGCGAGGAAAGGAGTTGGAGCCAGGAATGTGGTGGCGAAGAGA
GAATATGTTTTTCTCCCTTCATTTCAGCGAAGCCTACCGTGGGTTTGTGA
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