mRNA_H-canaliculatus_F_contig12038.1780.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE) HSP 1 Score: 412 bits (1058), Expect = 2.610e-129 Identity = 208/223 (93.27%), Postives = 216/223 (96.86%), Query Frame = 1
Query: 1 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDDKRSRLSRLLQEAPLDRGSVVVYVWRQVTAEAVCSLLQGDGHNAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAV+ DICTTLRIP K GV+VGSWDRPNLDVRVLRSASDDDKRSRLSRLLQEAPLD+GSVVVYVWRQVTAEAVC+LLQGDGHNAVAYHGGMEAGARQ+AQ+AFMRGR+RVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ + GRD
Sbjct: 1597 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVVEDICTTLRIPRKHGVKVGSWDRPNLDVRVLRSASDDDKRSRLSRLLQEAPLDKGSVVVYVWRQVTAEAVCALLQGDGHNAVAYHGGMEAGARQRAQNAFMRGRSRVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQEIGRAGRD 1819
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI) HSP 1 Score: 410 bits (1053), Expect = 1.080e-128 Identity = 207/223 (92.83%), Postives = 215/223 (96.41%), Query Frame = 1
Query: 1 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDDKRSRLSRLLQEAPLDRGSVVVYVWRQVTAEAVCSLLQGDGHNAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAV+ DICTTLRIP K GV+VGSWDRPNLDVRVLRSASDDDKRS LSRLLQEAPLD+GSVVVYVWRQVTAEAVC+LLQGDGHNAVAYHGGMEAGARQ+AQ+AFMRGR+RVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ + GRD
Sbjct: 1451 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVVEDICTTLRIPRKDGVKVGSWDRPNLDVRVLRSASDDDKRSSLSRLLQEAPLDKGSVVVYVWRQVTAEAVCALLQGDGHNAVAYHGGMEAGARQRAQNAFMRGRSRVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQEIGRAGRD 1673
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: A0A835Z8Q0_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q0_9STRA) HSP 1 Score: 263 bits (672), Expect = 3.340e-79 Identity = 137/223 (61.43%), Postives = 163/223 (73.09%), Query Frame = 1
Query: 1 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDDKRSRLSRLLQEAPLDRGSVVVYVWRQVTAEAVCSLLQGDGHNAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
VLF+SPE+LCS +F+RLA+ G LPPVSLLC+DEAHC+SQWSHNFRPSYLRL L R VLALTATAS+AV+ ++C +L IP G VRVGSW RPNL V V R A D KR L L+ + G+ +VYVWRQV+AE V LQ +GH+A AYH GM+AG R K Q+AFMR R RV+VATVAFGLGVDM +R V+H+D P S+E YVQ V GRD
Sbjct: 78 VLFVSPERLCSAAFQRLAAARGVLPPVSLLCLDEAHCMSQWSHNFRPSYLRLRTEAAALNARCVLALTATASRAVVSELCASLSIPACG-VRVGSWQRPNLRVAVQRVADDAAKRRVLRALMAQPAFGDGACIVYVWRQVSAEVVAEFLQSEGHSAAAYHAGMDAGERAKVQAAFMRRRVRVMVATVAFGLGVDMACVRAVIHYDAPSSLEGYVQEVGRAGRD 299
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: W7TAC7_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAC7_9STRA) HSP 1 Score: 225 bits (573), Expect = 3.910e-64 Identity = 124/237 (52.32%), Postives = 156/237 (65.82%), Query Frame = 1
Query: 1 VLFLSPEKLCSPSFRRLASTPG-----ALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLD-LLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDD-KRSRLSRLLQEAPLDRGSVVVYVWRQVTAEAVCSLLQGDGHNAVAYHGGMEAGARQKAQSAFMR-------GRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQVCS-CGRD 666
+LF+SPEKLCSPSFRRL PPV+L+C+DEAHC+SQWSHNFRP++LRLG ++ LLRPR +LA+TATA V+ DIC+ L I GV W R NL +R+ D + KR + LL AP D+GSV+VYV +Q AE + L +G +AVAYH GM+ R AQ A+MR GRARV VAT+AFGLGVD D+R V+H++MPKS+EN VQ GRD
Sbjct: 1112 ILFVSPEKLCSPSFRRLVENENDAVGRGFPPVALVCIDEAHCISQWSHNFRPAFLRLGHNIERLLRPRALLAMTATADPGVMKDICSRLSISSDAGVLAQPWRRHNLRLRIQLLDGDAELKRRHILNLLSNAPYDQGSVIVYVRQQKDAEILKDFLVSEGQSAVAYHAGMDMRHRDMAQGAWMRRRITGSGGRARVCVATIAFGLGVDKGDVRAVLHYEMPKSVENLVQETGRAGRD 1348
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: B8CFG9_THAPS (DNA helicase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFG9_THAPS) HSP 1 Score: 196 bits (497), Expect = 3.200e-58 Identity = 116/236 (49.15%), Postives = 143/236 (60.59%), Query Frame = 1
Query: 1 VLFLSPEKLCSPSFRRLASTP---------GALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDDKRSRLSRLL--QEAPLDRGSVVVYVWRQVTAEAVCSLLQGDG--HNAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
VLF+SPE+L S +FRRL P VSLLCVDEAHC+SQW HNFRPSYLR+ L L+ P+ +LALTATA V+ DIC TL IP G G + +L + S D R+ + L E L +GSV+VYVWRQ E V L G G V YHGGME+ R KAQS F+RG+AR+ VATVAFGLG++ DI GV+H +P S E+Y+Q + GRD
Sbjct: 96 VLFVSPERLASAAFRRLVRPKFNVETRQYERQFPTVSLLCVDEAHCLSQWGHNFRPSYLRVRSLLPLIEPKSILALTATAGPMVVRDICNTLCIPFDGR---GLNSKVSLPPFISSQVSKDSDGVRVVKSLPVDEGCLSKGSVIVYVWRQKDTEIVADQLIGAGVAGGVVCYHGGMESNDRTKAQSKFLRGKARICVATVAFGLGINKPDIEGVIHLCLPPSPEHYLQEIGRAGRD 328
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: A0A5A8ECU5_CAFRO (DNA helicase n=9 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ECU5_CAFRO) HSP 1 Score: 205 bits (522), Expect = 2.710e-57 Identity = 121/230 (52.61%), Postives = 152/230 (66.09%), Query Frame = 1
Query: 1 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLD-LLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDDKRSR-LSRLLQEA--PLDRG---SVVVYVWRQVTAEAVCSLLQGDGHNAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
VLF+SPE+L +PSFRRLA+ P + PPV++L +DEAHCV++W HNFRP+YLRL + +LRPR LALTATA+ + +C +L +P +GGVRVG W RPNL + S + D R R L RLL +A PL SV+VYV RQ AEAV L+ G A YH GM R + Q F G RVVVATVAFGLG+D D+RGVVH+ P+S E+Y+Q V GRD
Sbjct: 582 VLFVSPERLLAPSFRRLAADPLSFPPVAMLAIDEAHCVTEWGHNFRPAYLRLRAAAERVLRPRCTLALTATATPRAVSGVCGSLSLP-EGGVRVGDWHRPNLFLSA--SKEEGDLRPRALVRLLSDADSPLSARAAPSVIVYVQRQREAEAVADGLRSRGVGAAPYHAGMGPSQRARTQRRFTGGTLRVVVATVAFGLGIDKADVRGVVHWGAPRSPEDYLQQVGRAGRD 808
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: B7G345_PHATC (DNA helicase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G345_PHATC) HSP 1 Score: 204 bits (518), Expect = 9.340e-57 Identity = 119/257 (46.30%), Postives = 155/257 (60.31%), Query Frame = 1
Query: 1 VLFLSPEKLCSPSFRRL---------ASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLK------GGVRVGSWDRPNLDVRVLRSASDDDKRSRLSRLL-----------------QEAPLDRGSVVVYVWRQVTAEAVCSLLQGDGHNA--VAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
+LF+SPE+L S SFRRL PPVSLLCVDEAHC+SQW+HNFRPSYLRL +++++P VLA+TATA V+ DIC TL I GVRV +R N+DVR L S ++ ++ ++L + L G+V+VYVWRQ+ A+AV LQ G V YHGGM+A AR KAQS FMRG+AR+ VATVAFGLG++ D+ GV+H + S E+Y+Q + GRD
Sbjct: 822 ILFVSPERLTSASFRRLFRPIWNTDRREHERKFPPVSLLCVDEAHCLSQWAHNFRPSYLRLKSMVNMIQPESVLAITATAGPKVVTDICRTLNIDKNMSEEADNGVRVMKCNRDNIDVRCLLLTSQTERLKKVIKILTPKKKRTSNKSVAPEVSDDGCLATGNVIVYVWRQLDAQAVAENLQAAGIEGGIVIYHGGMDASARSKAQSKFMRGKARICVATVAFGLGINKEDVTGVIHMYLSASPEHYMQEIGRAGRD 1078
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: A0A3L6VVH4_9STRA (DNA helicase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VVH4_9STRA) HSP 1 Score: 199 bits (506), Expect = 1.640e-56 Identity = 112/224 (50.00%), Postives = 147/224 (65.62%), Query Frame = 1
Query: 1 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDDKRSRLSRLLQEAPLDRGSVVVYVWRQVTAEAVCSLLQGDGH-NAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
+LF+SPE++ + F RL + VSL+C+DEAHCVS+WSHNFRP++LRLG+ R VLALTATAS AV DI L IP G+ S RPNLD+ V R DDD+ + L LL APL++GSV+VYV Q A V +LL + + A AYH G+ + ++K Q F G+ RVVVAT+AFG+G+D ++RGVVHF MP S+E+YVQ + GRD
Sbjct: 70 LLFVSPERVVTAGFARLLARVH----VSLVCIDEAHCVSEWSHNFRPAFLRLGRVTR--RATNVLALTATASVAVTRDIVRILEIPTDQGIHRCSAYRPNLDLHVQRIQHDDDRYAALRTLLTTAPLNKGSVIVYVHTQYAAAQVAALLTTEANIKASAYHAGLSSDVKEKVQKGFASGKVRVVVATIAFGMGIDKANVRGVVHFHMPTSMEHYVQHIGRAGRD 287
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: A0A7S2Q2M5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q2M5_9STRA) HSP 1 Score: 202 bits (513), Expect = 4.430e-56 Identity = 123/271 (45.39%), Postives = 155/271 (57.20%), Query Frame = 1
Query: 1 VLFLSPEKLCSPSFRRLASTPGAL---------PPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKG-------------------GVRVGSWDRPNLDV----------------RVLRSASDDDKRSRLSRLL--QEAPLDRGSVVVYVWRQVTAEAVCSLLQGDG--HNAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
VLF+SPE+L S +FRRL L P VSLLCVDEAHC+SQW HNFRPSYLR+ + L++P+ VLALTATA V+ DIC TL IP G GV+V + +R N+DV ++L+ DD R S+ L +E L +GSV++YVWRQ E V L G G V YHGGM A R KAQS F+RG+AR+ VATVAFGLG++ DI GV+H +P S E+Y+Q + GRD
Sbjct: 947 VLFVSPERLASAAFRRLMRPKFNLETRQYERQFPEVSLLCVDEAHCLSQWGHNFRPSYLRVRSLMSLIQPKSVLALTATAGPMVVKDICNTLCIPFDGQCTINDEIPSSLDSTSNGVGVKVLNCNRDNIDVFSLVLQDQDERRYLVHKLLKEKKSDDSDRRQSKKLPIEEGCLSKGSVIIYVWRQKDTEIVAEQLNGAGVLGGVVCYHGGMNANDRSKAQSKFLRGKARICVATVAFGLGINKADIEGVIHLCLPPSPEHYLQEIGRAGRD 1217
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Match: W4G2T7_9STRA (DNA helicase n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G2T7_9STRA) HSP 1 Score: 199 bits (506), Expect = 3.440e-55 Identity = 112/224 (50.00%), Postives = 147/224 (65.62%), Query Frame = 1
Query: 1 VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLRLGQTLDLLRPRGVLALTATASKAVIGDICTTLRIPLKGGVRVGSWDRPNLDVRVLRSASDDDKRSRLSRLLQEAPLDRGSVVVYVWRQVTAEAVCSLLQGDGH-NAVAYHGGMEAGARQKAQSAFMRGRARVVVATVAFGLGVDMRDIRGVVHFDMPKSIENYVQ-VCSCGRD 666
+LF+SPE++ + F RL + VSL+C+DEAHCVS+WSHNFRP++LRLG+ R VLALTATAS AV DI L IP G+ S RPNLD+ V R DDD+ + L LL APL++GSV+VYV Q A V +LL + + A AYH G+ + ++K Q F G+ RVVVAT+AFG+G+D ++RGVVHF MP S+E+YVQ + GRD
Sbjct: 537 LLFVSPERVVTAGFARLLARVH----VSLVCIDEAHCVSEWSHNFRPAFLRLGRVTR--RATNVLALTATASVAVTRDIVRILEIPTDRGIHRCSAYRPNLDLHVQRIQHDDDRYAALRTLLTTAPLNKGSVIVYVHTQYAAAQVAALLTTEANIKASAYHAGLSSDVKEKVQKGFASGKVRVVVATIAFGMGIDKANVRGVVHFHMPTSMEHYVQHIGRAGRD 754 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12038.1780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12038.1780.1 >prot_H-canaliculatus_F_contig12038.1780.1 ID=prot_H-canaliculatus_F_contig12038.1780.1|Name=mRNA_H-canaliculatus_F_contig12038.1780.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=222bp VLFLSPEKLCSPSFRRLASTPGALPPVSLLCVDEAHCVSQWSHNFRPSYLback to top mRNA from alignment at H-canaliculatus_F_contig12038:150..2955+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12038.1780.1 ID=mRNA_H-canaliculatus_F_contig12038.1780.1|Name=mRNA_H-canaliculatus_F_contig12038.1780.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2806bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12038:150..2955+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12038:150..2955+ >mRNA_H-canaliculatus_F_contig12038.1780.1 ID=mRNA_H-canaliculatus_F_contig12038.1780.1|Name=mRNA_H-canaliculatus_F_contig12038.1780.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1332bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12038:150..2955+ (Hapterophycus canaliculatus Oshoro5f female)back to top |