mRNA_H-canaliculatus_F_contig12020.1774.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE) HSP 1 Score: 253 bits (645), Expect = 5.750e-75 Identity = 130/171 (76.02%), Postives = 140/171 (81.87%), Query Frame = 1
Query: 1 DVKLGDPVKANQDSPCLKAAVDAIRTQALANGSIIGLDIEWEISAAGAPVNPPATIQLAAGKAGVIFHVLHGQRA--------LVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRRGLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQK 489
DV LG+PVKANQDSPCLKAAVDAIR QA AN ++ LDIEWEISAAGAP NPPATIQLAAGK VIFHVLHGQR+ LVD LED KLTKTGVGIKGDCTRL+ FYGV+VA VDLRSLA ERKV +GLRRGLADLCVHLLG LPKDP VR+S+WN LS +QK
Sbjct: 220 DVVLGEPVKANQDSPCLKAAVDAIRMQAEANNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQK 390
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A0L9U4N3_PHAAN (3'-5' exonuclease domain-containing protein n=3 Tax=Vigna TaxID=3913 RepID=A0A0L9U4N3_PHAAN) HSP 1 Score: 92.4 bits (228), Expect = 4.870e-20 Identity = 52/136 (38.24%), Postives = 77/136 (56.62%), Query Frame = 1
Query: 94 GSIIGLDIEWEISAAGAPVNPPATIQLAAGKAGVIFHVLHG---QRALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVG--LRRGLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
G ++GLD+EW + NP AT+QL G A ++F ++H +L L+D +T GVGI+ D +L YG+ VA V DLRSLA + G + GL LC+H+LGV + K ++ S W+ +L+ EQ
Sbjct: 69 GLMVGLDVEWRPNTQPNTQNPVATLQLCVGHACLVFQIIHSPFFSHSLDSFLQDPNVTFFGVGIRADAEKLLRDYGLYVANVYDLRSLAEAKLRGYPHLSQAGLKTLCLHVLGVDVEKPQSITRSFWDNTRLTAEQ 204
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: F2EF68_HORVV (Predicted protein n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2EF68_HORVV) HSP 1 Score: 89.4 bits (220), Expect = 5.300e-19 Identity = 56/133 (42.11%), Postives = 77/133 (57.89%), Query Frame = 1
Query: 100 IIGLDIEWEISAAGAPVNPPATIQLAAGKAGVIFHVLHGQ---RALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRR-GLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
I+GLD+EW S G NP A +QL G+ +IF +LH AL L D GVG++ D RL+D +G++VA VVDLRSLAA+ LR+ GL D+ ++G +L K V + W+ +LSQEQ
Sbjct: 47 IVGLDVEWRPSF-GRAQNPVALLQLCVGRRCLIFQLLHADFIPLALRRFLADPDFRFVGVGVQNDVDRLNDDHGLEVANVVDLRSLAADEMRRPWLRQAGLKDVAGVVMGANLHKPRRVTMGPWDACRLSQEQ 178
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A2N9HCJ7_FAGSY (3'-5' exonuclease domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HCJ7_FAGSY) HSP 1 Score: 85.1 bits (209), Expect = 2.170e-17 Identity = 51/132 (38.64%), Postives = 76/132 (57.58%), Query Frame = 1
Query: 100 IIGLDIEWEISAAGAPVNPPATIQLAAGKAGVIFHVLHGQR---ALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRRGLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
I+GLD+EW + NP AT+QL G+ ++F +++ +L+D L D++ T GVGI D +L + YG++VA VVDLRSLA E GL L +LG+ + K +V +SRW+ L+ EQ
Sbjct: 59 IVGLDVEWRPNNRHFE-NPAATLQLCVGRRCLVFQLIYASYFPDSLIDFLGDERFTFVGVGIASDVEKLLEDYGLKVANVVDLRSLAVEMGNRDLRNAGLKGLARAVLGMEIHKPRSVTLSRWDREFLTYEQ 189
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A4D6NDC0_VIGUN (Werner syndrome ATP-dependent helicase n=2 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6NDC0_VIGUN) HSP 1 Score: 85.5 bits (210), Expect = 2.190e-17 Identity = 52/136 (38.24%), Postives = 73/136 (53.68%), Query Frame = 1
Query: 94 GSIIGLDIEWEISAAGAPVNPPATIQLAAGKAGVIFHVLHG---QRALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRR--GLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
G ++GLDIEW NP AT+QL G A ++F ++H +L L+D +T GVGI+ D +L YG+ VA V DLRSLA + R GL LC+H+LG + K ++ S W+ L+ EQ
Sbjct: 70 GLMVGLDIEWRPITQPNTQNPVATLQLCVGNACLVFQIIHAPYFSHSLGSFLQDLNVTFLGVGIRADAEKLLRDYGLHVANVCDLRSLAEVKLWRYPHLRQAGLKTLCLHVLGAEVEKPQSISRSLWDNRCLTAEQ 205
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 3.670e-16 Identity = 55/141 (39.01%), Postives = 75/141 (53.19%), Query Frame = 1
Query: 94 GSIIGLDIEWEISAAGAPVNPPATIQLAAGKA-GVIFHVLHG---------QRALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRRGLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
G ++G+D EWE G+ T+QLA +FH+ G R+L L D +TK GV +KGD +RL YGV+ +VDLRS A V + R LA + LG SL K+P+VR SRW+ A+L+Q Q
Sbjct: 87 GHVLGMDCEWEPPFDGSSEGAVCTLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDLPCR-SLAGMVATALGKSLSKNPSVRFSRWSQAELTQNQ 226
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: UPI001CB93B92 (Werner Syndrome-like exonuclease n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB93B92) HSP 1 Score: 73.2 bits (178), Expect = 7.760e-13 Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 1
Query: 100 IIGLDIEWEISAAGAPV-NPPATIQLAAGKAGVIFHVLHGQ---RALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRR-GLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
IIGLDIEW NP AT+QL G+ +++ + H +L L++ T TGVG++ D +L++ YG+ VA++ D+R LAA+ V + G+ L + +L + K +V +SRW+ LS EQ
Sbjct: 58 IIGLDIEWRPDFQNPTSRNPVATLQLCVGRRCLVYQMTHSPFIPNSLKILLKNPNYTFTGVGVQYDVQKLNEDYGIVVAKIADVRELAAQVYGNVEFKNAGIKTLGMLVLRREVEKPKSVTLSRWDDLVLSAEQ 191
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A8B8NFB3_9MYRT (Werner Syndrome-like exonuclease n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8NFB3_9MYRT) HSP 1 Score: 72.4 bits (176), Expect = 2.240e-12 Identity = 46/132 (34.85%), Postives = 69/132 (52.27%), Query Frame = 1
Query: 103 IGLDIEWEISAAGAPVNPPATIQLAAGKAGVIFHVLHGQ---RALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRR-GLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
+G DI+W S A +P ATI L G+ +++ +L + R+L +L D + TGV I D +LS+ YG++V + VDL LAA LRR GLA L L G L + + +W+ +L+ Q
Sbjct: 56 VGFDIKWRPSFARGVRHPVATIHLCIGRCCLVYQILRARCLPRSLYLALRDPRFVFTGVRIAPDAAKLSEDYGLEVKKAVDLGKLAARETNRRELRRAGLATLVRELKGRDLKIPREIALGKWDARRLTPRQ 187
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A061DTA6_THECC (Polynucleotidyl transferase, putative n=2 Tax=Theobroma cacao TaxID=3641 RepID=A0A061DTA6_THECC) HSP 1 Score: 70.9 bits (172), Expect = 4.620e-12 Identity = 50/155 (32.26%), Postives = 78/155 (50.32%), Query Frame = 1
Query: 37 DSPCLKAA-VDAIRTQALANGSIIGLDIEWEISAAGAPVNPPATIQLAAGKAGVI---FHVLHGQRALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRR-GLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
D C+ A V IR+ I+GLD EW + +N A +QL +I F++ + ++L L+D +T GV ++ D +L D YG+Q AR+ D+R L R + R+ GL D+ +LG+S+PK V S W ++ L Q
Sbjct: 27 DKACVADAWVCNIRSMYNGQQMIVGLDSEWRPNTTSTLINRTAVLQLCIETKCLILQLFYLDYIPQSLKSFLQDPNVTFVGVEVERDAAKLRDEYGLQCARIADVRELTMNRWPLLFHRKPGLKDIAYQVLGLSMPKPMHVSRSDWQSSVLDCSQ 181
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Match: A0A5J5BE12_9ASTE (3'-5' exonuclease domain-containing protein n=2 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BE12_9ASTE) HSP 1 Score: 69.3 bits (168), Expect = 1.080e-11 Identity = 48/133 (36.09%), Postives = 66/133 (49.62%), Query Frame = 1
Query: 100 IIGLDIEWEISAAGAPV-NPPATIQLAAGKAGVIFHVLHGQ---RALVDSLEDDKLTKTGVGIKGDCTRLSDFYGVQVARVVDLRSLAAERKVGVGLRRGLADLCVHLLGVSLPKDPAVRISRWNTAKLSQEQ 486
I+GLD+EW + + NP AT+QL G +IF +LH + L D L + T GV I GD +L +G++VA+ VDL SLA E GL +LG + K VR S W+ L+ Q
Sbjct: 40 IVGLDVEWRPNRIRNSIENPAATLQLCVGHRCLIFQLLHASHFPQLLKDFLGNPNYTFVGVKIDGDVKKLMKDHGLEVAKAVDLGSLAEENGRMELRYAGLKIFAREVLGKEVEKRTPVRWSEWDNVCLTPAQ 172 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12020.1774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12020.1774.1 >prot_H-canaliculatus_F_contig12020.1774.1 ID=prot_H-canaliculatus_F_contig12020.1774.1|Name=mRNA_H-canaliculatus_F_contig12020.1774.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=165bp DVKLGDPVKANQDSPCLKAAVDAIRTQALANGSIIGLDIEWEISAAGAPVback to top mRNA from alignment at H-canaliculatus_F_contig12020:1825..2343- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12020.1774.1 ID=mRNA_H-canaliculatus_F_contig12020.1774.1|Name=mRNA_H-canaliculatus_F_contig12020.1774.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=519bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12020:1825..2343- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12020:1825..2343- >mRNA_H-canaliculatus_F_contig12020.1774.1 ID=mRNA_H-canaliculatus_F_contig12020.1774.1|Name=mRNA_H-canaliculatus_F_contig12020.1774.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=990bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12020:1825..2343- (Hapterophycus canaliculatus Oshoro5f female)back to top |