mRNA_H-canaliculatus_F_contig1202.1771.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1202.1771.1
Unique NamemRNA_H-canaliculatus_F_contig1202.1771.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1202.1771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1202contigH-canaliculatus_F_contig1202:1376..1795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1202.1771.1prot_H-canaliculatus_F_contig1202.1771.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1202 1417..1728 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928913.548426-UTR-H-canaliculatus_F_contig1202:1375..14161622928913.548426-UTR-H-canaliculatus_F_contig1202:1375..1416Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1202 1376..1416 +
1696845610.5666275-UTR-H-canaliculatus_F_contig1202:1375..14161696845610.5666275-UTR-H-canaliculatus_F_contig1202:1375..1416Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1202 1376..1416 +
1622928913.5978942-UTR-H-canaliculatus_F_contig1202:1728..17951622928913.5978942-UTR-H-canaliculatus_F_contig1202:1728..1795Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1202 1729..1795 +
1696845610.5927064-UTR-H-canaliculatus_F_contig1202:1728..17951696845610.5927064-UTR-H-canaliculatus_F_contig1202:1728..1795Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1202 1729..1795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928913.562973-CDS-H-canaliculatus_F_contig1202:1416..17281622928913.562973-CDS-H-canaliculatus_F_contig1202:1416..1728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1202 1417..1728 +
1696845610.576485-CDS-H-canaliculatus_F_contig1202:1416..17281696845610.576485-CDS-H-canaliculatus_F_contig1202:1416..1728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1202 1417..1728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1202.1771.1

>prot_H-canaliculatus_F_contig1202.1771.1 ID=prot_H-canaliculatus_F_contig1202.1771.1|Name=mRNA_H-canaliculatus_F_contig1202.1771.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=104bp
MVWERGVGDKAIPSEQGPGGIYGSAAITSKNRKNVILNTRIQDVERQAKH
WKYWKYCKGILVPYRLVPYRVNLQPRARECPHRHTVPRRIERHPLRVDFH
QKR*
back to top

mRNA from alignment at H-canaliculatus_F_contig1202:1376..1795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1202.1771.1 ID=mRNA_H-canaliculatus_F_contig1202.1771.1|Name=mRNA_H-canaliculatus_F_contig1202.1771.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1202:1376..1795+ (Hapterophycus canaliculatus Oshoro5f female)
GCGAGACAAACGTACCTGGACGAATCATGTAGTATGGTGGAATGGTTTGG
GAGAGAGGTGTGGGGGACAAGGCGATTCCTTCTGAACAGGGGCCAGGGGG
AATATACGGTTCTGCTGCCATCACTTCCAAAAATAGAAAAAATGTTATTC
TGAACACCCGGATTCAGGATGTAGAGAGGCAAGCCAAACACTGGAAATAC
TGGAAATACTGCAAAGGGATACTTGTTCCCTATCGTCTTGTGCCTTATCG
TGTCAACCTCCAGCCCCGTGCGCGTGAGTGCCCGCATCGACATACAGTAC
CAAGACGCATAGAAAGACACCCGTTACGCGTGGATTTTCACCAAAAAAGG
TAGCAGCAACTAACCGTCATCGAAGCGCAAGCTCCGACCGTCCTCCCCCG
GCTTTACACATGGGGGTGTG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1202:1376..1795+

>mRNA_H-canaliculatus_F_contig1202.1771.1 ID=mRNA_H-canaliculatus_F_contig1202.1771.1|Name=mRNA_H-canaliculatus_F_contig1202.1771.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1202:1376..1795+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTTGGGAGAGAGGTGTGGGGGACAAGGCGATTCCTTCTGAACAGGG
GCCAGGGGGAATATACGGTTCTGCTGCCATCACTTCCAAAAATAGAAAAA
ATGTTATTCTGAACACCCGGATTCAGGATGTAGAGAGGCAAGCCAAACAC
TGGAAATACTGGAAATACTGCAAAGGGATACTTGTTCCCTATCGTCTTGT
GCCTTATCGTGTCAACCTCCAGCCCCGTGCGCGTGAGTGCCCGCATCGAC
ATACAGTACCAAGACGCATAGAAAGACACCCGTTACGCGTGGATTTTCAC
CAAAAAAGGTAGATGGTTTGGGAGAGAGGTGTGGGGGACAAGGCGATTCC
TTCTGAACAGGGGCCAGGGGGAATATACGGTTCTGCTGCCATCACTTCCA
AAAATAGAAAAAATGTTATTCTGAACACCCGGATTCAGGATGTAGAGAGG
CAAGCCAAACACTGGAAATACTGGAAATACTGCAAAGGGATACTTGTTCC
CTATCGTCTTGTGCCTTATCGTGTCAACCTCCAGCCCCGTGCGCGTGAGT
GCCCGCATCGACATACAGTACCAAGACGCATAGAAAGACACCCGTTACGC
GTGGATTTTCACCAAAAAAGGTAG
back to top