mRNA_H-canaliculatus_F_contig1200.1756.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1200.1756.1
Unique NamemRNA_H-canaliculatus_F_contig1200.1756.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1200.1756.1 vs. uniprot
Match: A0A6H5L2H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.510e-12
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 2 
Query:    2 SKYKKMKKRLKDAKMLKRKMMGEHSGSIS--DKKKVKKKIKKLSTKTKSMKMD----ASSWRVHGSGGDSSDSCS 208
            SKYKK+K  LKDAK LK K+M E  GS S  +KKKVK KIKKLSTKTKSM +D    +SSWR+H SGG+SSD CS
Sbjct:    5 SKYKKLKXTLKDAKALK-KIMDESVGSTSSPEKKKVKXKIKKLSTKTKSMNLDGHAGSSSWRIHDSGGESSDPCS 78
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BLAST of mRNA_H-canaliculatus_F_contig1200.1756.1 vs. uniprot
Match: D8LJ38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ38_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.230e-7
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 2 
Query:  101 VKKKIKKLSTKTKSMKMD----ASSWRVHGSGGDSSDSCS 208
            VKKKIKKLSTKTKSMK+D    +SSWR+HGSGG+SSDSCS
Sbjct:   53 VKKKIKKLSTKTKSMKLDGHASSSSWRIHGSGGESSDSCS 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1200.1756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2H7_9PHAE2.510e-1266.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ38_ECTSI2.230e-780.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1200contigH-canaliculatus_F_contig1200:1931..3178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExpressed unknown protein
Ec32 orthologEc-02_004620.1
Exons2
Model size665
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1200.1756.1prot_H-canaliculatus_F_contig1200.1756.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1200 1947..2847 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.5767038-UTR-H-canaliculatus_F_contig1200:1930..19461622928911.5767038-UTR-H-canaliculatus_F_contig1200:1930..1946Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1200 1931..1946 +
1696845609.6492336-UTR-H-canaliculatus_F_contig1200:1930..19461696845609.6492336-UTR-H-canaliculatus_F_contig1200:1930..1946Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1200 1931..1946 +
1622928911.643179-UTR-H-canaliculatus_F_contig1200:2847..31781622928911.643179-UTR-H-canaliculatus_F_contig1200:2847..3178Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1200 2848..3178 +
1696845609.6755092-UTR-H-canaliculatus_F_contig1200:2847..31781696845609.6755092-UTR-H-canaliculatus_F_contig1200:2847..3178Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1200 2848..3178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928911.6067069-CDS-H-canaliculatus_F_contig1200:1946..20301622928911.6067069-CDS-H-canaliculatus_F_contig1200:1946..2030Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1200 1947..2030 +
1696845609.6581795-CDS-H-canaliculatus_F_contig1200:1946..20301696845609.6581795-CDS-H-canaliculatus_F_contig1200:1946..2030Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1200 1947..2030 +
1622928911.6240532-CDS-H-canaliculatus_F_contig1200:2613..28471622928911.6240532-CDS-H-canaliculatus_F_contig1200:2613..2847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1200 2614..2847 +
1696845609.6668794-CDS-H-canaliculatus_F_contig1200:2613..28471696845609.6668794-CDS-H-canaliculatus_F_contig1200:2613..2847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1200 2614..2847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1200.1756.1

>prot_H-canaliculatus_F_contig1200.1756.1 ID=prot_H-canaliculatus_F_contig1200.1756.1|Name=mRNA_H-canaliculatus_F_contig1200.1756.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=106bp
MKKRLKDAKMLKRKMMGEHSGSISDKKKVKKKIKKLSTKTKSMKMDASSW
RVHGSGGDSSDSCSSQSSDSDWGGSDWGSDSSSECGSDSGGSDSGGGDSD
GGGSD*
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mRNA from alignment at H-canaliculatus_F_contig1200:1931..3178+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1200.1756.1 ID=mRNA_H-canaliculatus_F_contig1200.1756.1|Name=mRNA_H-canaliculatus_F_contig1200.1756.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1248bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1200:1931..3178+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCAAGTACAAGAAGATGAAGAAAAGGCTGAAAGATGCCAAAATGCTCA
AGAGGAAAATGATGGGCGAACACAGCGGCAGCATCTCCGACAAGAAAAAG
GTGTGGACCGGCGAAAAGTTCCAGGTTTGCGGGAGTTTGGTTCGTCCGAC
AACTATTATGTGCGACACGAACATCGATGGCGACATACATGATGGATGTT
TCACTTTTGCTGTTGTGGCTATATATGGACGATGATAGTTGCAACTTTCA
AACGACGAAACTTCTGTAGCGCTCTGACTGTTTCGTTTTTTTCTGTCGAT
GCCGCCATCAGCAACGACACCTTAACCCATCCCCTTCAGGAAGATAAGCG
TTTCCGCTGTTTCGCATGTTTTTTATACTACCTTGGTTGTAGTGATGAAA
TTAAATGCTGCACGCCGAAATAAGATGAGAAAAGCAGCCTGACTCACAAA
ACGAACAAAGAATCCTTGCTGCGGTACGAGAATCGAATGATTGCAGGCAC
AAGTGCTGCTGTGCAGTTGTACGTGTGATGGTTGCTTATACCTCAGAATC
TTCTAAGAAAGAAGACTTACCGAAATCTGAAGATGAACGATACAGCGTCG
TCACCGTGGTTCGGCGGCCGCACGTGCTCTAATACCAATATAGAAAACAA
CAACAAAATAATCGTCAAAAACAAACAAATCAGGTGAAGAAGAAGATCAA
GAAGCTCTCCACCAAGACCAAATCCATGAAGATGGATGCCTCCAGCTGGC
GGGTTCACGGATCCGGGGGAGACTCGAGTGACTCCTGTTCCAGCCAGAGC
TCTGACTCAGACTGGGGAGGTTCTGATTGGGGTTCCGATTCTTCTTCCGA
ATGCGGGTCTGATTCTGGAGGCTCGGATAGCGGTGGGGGTGATTCGGATG
GGGGGGGTTCTGACTGAAAACCTCCATACATGTACCACCCTAGGACATAT
GGACACCCTGTTCCTTGGATGGGGTGGTGATATCGTGTATGATACTGGTT
TAATGGACCTTGTGAGTGGCGCGATCCGACCGGCCGCAGATTGCTGGCCT
GTGACGTTCTTCGAAGGGGGGCGGAGGTCGATACCTGCATACATTGCACG
ACGATCCAACGATCGACATTCGATGTGTTCACCGGGTCGTGAACCTGGTA
AAAGAGCTATCGTTCGTAACGAAGACCACCGGCTACAGTGCTAGTGGTAA
TCTGCCGCCAGAGAGCCATTTCTCTTGAAGAGGTGACGATAAAGCTTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1200:1931..3178+

>mRNA_H-canaliculatus_F_contig1200.1756.1 ID=mRNA_H-canaliculatus_F_contig1200.1756.1|Name=mRNA_H-canaliculatus_F_contig1200.1756.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=636bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1200:1931..3178+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGAAAAGGCTGAAAGATGCCAAAATGCTCAAGAGGAAAATGATGGG
CGAACACAGCGGCAGCATCTCCGACAAGAAAAAGATGAAGAAAAGGCTGA
AAGATGCCAAAATGCTCAAGAGGAAAATGATGGGCGAACACAGCGGCAGC
ATCTCCGACAAGAAAAAGGTGAAGAAGAAGATCAAGAAGCTCTCCACCAA
GACCAAATCCATGAAGATGGATGCCTCCAGCTGGCGGGTTCACGGATCCG
GGGGAGACTCGAGTGACTCCTGTTCCAGCCAGAGCTCTGACTCAGACTGG
GGAGGTTCTGATTGGGGTTCCGATTCTTCTTCCGAATGCGGGTCTGATTC
TGGAGGCTCGGATAGCGGTGGGGGTGATTCGGATGGGGGGGGTTCTGACT
GAGTGAAGAAGAAGATCAAGAAGCTCTCCACCAAGACCAAATCCATGAAG
ATGGATGCCTCCAGCTGGCGGGTTCACGGATCCGGGGGAGACTCGAGTGA
CTCCTGTTCCAGCCAGAGCTCTGACTCAGACTGGGGAGGTTCTGATTGGG
GTTCCGATTCTTCTTCCGAATGCGGGTCTGATTCTGGAGGCTCGGATAGC
GGTGGGGGTGATTCGGATGGGGGGGGTTCTGACTGA
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