mRNA_H-canaliculatus_F_contig11990.1739.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11990.1739.1
Unique NamemRNA_H-canaliculatus_F_contig11990.1739.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11990.1739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11990contigH-canaliculatus_F_contig11990:189..708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size522
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928907.280374-UTR-H-canaliculatus_F_contig11990:188..3961622928907.280374-UTR-H-canaliculatus_F_contig11990:188..396Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11990 189..396 +
1696845607.6803799-UTR-H-canaliculatus_F_contig11990:188..3961696845607.6803799-UTR-H-canaliculatus_F_contig11990:188..396Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11990 189..396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928907.2899551-CDS-H-canaliculatus_F_contig11990:396..7081622928907.2899551-CDS-H-canaliculatus_F_contig11990:396..708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11990 397..708 +
1696845607.688292-CDS-H-canaliculatus_F_contig11990:396..7081696845607.688292-CDS-H-canaliculatus_F_contig11990:396..708Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11990 397..708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11990.1739.1prot_H-canaliculatus_F_contig11990.1739.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11990 397..708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11990.1739.1

>prot_H-canaliculatus_F_contig11990.1739.1 ID=prot_H-canaliculatus_F_contig11990.1739.1|Name=mRNA_H-canaliculatus_F_contig11990.1739.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=104bp
MGGWELQPFPPSWLLANACHRCGNFSRRFCLLRRHWSRCCCCSCSCCCCG
WCCPRSWHRYPIPADAHRPGRKSSTAQHPSRQPVENPAPHTPQQSAQRPR
RRRG
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mRNA from alignment at H-canaliculatus_F_contig11990:189..708+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11990.1739.1 ID=mRNA_H-canaliculatus_F_contig11990.1739.1|Name=mRNA_H-canaliculatus_F_contig11990.1739.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=520bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11990:189..708+ (Hapterophycus canaliculatus Oshoro5f female)
GCTCAACTCTCAAGCCATCTCGAAACCACATAACCAGAAACAAAAGAATC
AAAACCAAGCAGTCGCACTCATTCGTGCCTGATCGGGTCTCAAACCATAA
ATGGCGCTGCTGTTGATGGCGATGTAGCCTCCAAACACCGTCGCCAAAGC
ACCAAAAACCTGTGTTGCTCCGTTCATCCCCCAAACCCCCAAACCTTGCC
CCGATCGAATGGGCGGTTGGGAGCTCCAACCGTTCCCTCCTTCGTGGCTC
CTGGCAAACGCTTGCCACCGTTGTGGCAACTTTAGTCGCCGTTTTTGTTT
GCTGCGTCGTCATTGGAGTCGCTGCTGCTGCTGCTCCTGTAGCTGCTGCT
GTTGCGGCTGGTGCTGTCCACGCTCGTGGCACCGCTATCCTATTCCAGCA
GATGCACATCGCCCAGGGCGAAAATCGTCGACGGCACAACATCCATCTCG
TCAACCAGTGGAGAATCCGGCTCCTCACACACCACAGCAATCTGCCCAGC
GGCCTCGACGGCGTCGTGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11990:189..708+

>mRNA_H-canaliculatus_F_contig11990.1739.1 ID=mRNA_H-canaliculatus_F_contig11990.1739.1|Name=mRNA_H-canaliculatus_F_contig11990.1739.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11990:189..708+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGGTTGGGAGCTCCAACCGTTCCCTCCTTCGTGGCTCCTGGCAAA
CGCTTGCCACCGTTGTGGCAACTTTAGTCGCCGTTTTTGTTTGCTGCGTC
GTCATTGGAGTCGCTGCTGCTGCTGCTCCTGTAGCTGCTGCTGTTGCGGC
TGGTGCTGTCCACGCTCGTGGCACCGCTATCCTATTCCAGCAGATGCACA
TCGCCCAGGGCGAAAATCGTCGACGGCACAACATCCATCTCGTCAACCAG
TGGAGAATCCGGCTCCTCACACACCACAGCAATCTGCCCAGCGGCCTCGA
CGGCGTCGTGGAATGGGCGGTTGGGAGCTCCAACCGTTCCCTCCTTCGTG
GCTCCTGGCAAACGCTTGCCACCGTTGTGGCAACTTTAGTCGCCGTTTTT
GTTTGCTGCGTCGTCATTGGAGTCGCTGCTGCTGCTGCTCCTGTAGCTGC
TGCTGTTGCGGCTGGTGCTGTCCACGCTCGTGGCACCGCTATCCTATTCC
AGCAGATGCACATCGCCCAGGGCGAAAATCGTCGACGGCACAACATCCAT
CTCGTCAACCAGTGGAGAATCCGGCTCCTCACACACCACAGCAATCTGCC
CAGCGGCCTCGACGGCGTCGTGGA
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