mRNA_H-canaliculatus_F_contig11963.1717.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11963.1717.1
Unique NamemRNA_H-canaliculatus_F_contig11963.1717.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11963.1717.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.560e-16
Identity = 55/147 (37.41%), Postives = 81/147 (55.10%), Query Frame = 3 
Query:    3 VAMDRQGTTMLERVEPILSGLETFFAENPNFEALYRSPEGSYIKGPAEIITKALVEGLSPEKFKQDVLLKLRHKGGWKNDPDLVMDTIVDAAKEWRKVEAMQRPP-----AASKDAPRQQGAKSSKQSS--IVCHGCGQKGHYLSQC 422
            V M +Q T + +R++ +   L  +F ENP  +AL+    G++  GPA++ITK LV GL+P +F++ V   L  +G WK DP+LV D I +AA +WR VE  +R       AA K AP     +  K +   + C  CG+ GH    C
Sbjct:  126 VTMGKQPTAV-DRIDAVYDKLSVYF-ENPRSKALFCEVNGAFKPGPAQVITKHLVAGLTPPEFRKKVDGILAMRGRWKEDPELVFDLIREAATDWRTVEQFERDRGSQRGAAEKAAPSSAARRKQKSTPGPLTCWTCGEAGHRSGDC 270
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11963.1717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE2.560e-1637.41Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11963contigH-canaliculatus_F_contig11963:1358..1905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size549
Cds size540
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.0099907-UTR-H-canaliculatus_F_contig11963:1357..13651622928900.0099907-UTR-H-canaliculatus_F_contig11963:1357..1365Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11963 1358..1365 +
1696845606.3146148-UTR-H-canaliculatus_F_contig11963:1357..13651696845606.3146148-UTR-H-canaliculatus_F_contig11963:1357..1365Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11963 1358..1365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928900.0447128-CDS-H-canaliculatus_F_contig11963:1365..19051622928900.0447128-CDS-H-canaliculatus_F_contig11963:1365..1905Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11963 1366..1905 +
1696845606.3294535-CDS-H-canaliculatus_F_contig11963:1365..19051696845606.3294535-CDS-H-canaliculatus_F_contig11963:1365..1905Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11963 1366..1905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11963.1717.1prot_H-canaliculatus_F_contig11963.1717.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11963 1366..1905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11963.1717.1

>prot_H-canaliculatus_F_contig11963.1717.1 ID=prot_H-canaliculatus_F_contig11963.1717.1|Name=mRNA_H-canaliculatus_F_contig11963.1717.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=180bp
MDRQGTTMLERVEPILSGLETFFAENPNFEALYRSPEGSYIKGPAEIITK
ALVEGLSPEKFKQDVLLKLRHKGGWKNDPDLVMDTIVDAAKEWRKVEAMQ
RPPAASKDAPRQQGAKSSKQSSIVCHGCGQKGHYLSQCSASSGVAQGQSG
GSTSPQQRTRGSRKGNGHNRGGGGSSGGGG
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mRNA from alignment at H-canaliculatus_F_contig11963:1358..1905+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11963.1717.1 ID=mRNA_H-canaliculatus_F_contig11963.1717.1|Name=mRNA_H-canaliculatus_F_contig11963.1717.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=548bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11963:1358..1905+ (Hapterophycus canaliculatus Oshoro5f female)
CTGTCGCCATGGATAGACAGGGGACGACGATGCTGGAAAGGGTGGAGCCC
ATTTTGTCTGGTTTGGAAACTTTCTTCGCAGAAAATCCGAATTTCGAGGC
GCTTTATCGCTCCCCTGAAGGCTCGTATATCAAGGGCCCGGCGGAGATCA
TTACAAAGGCGTTGGTGGAAGGACTTTCGCCTGAAAAGTTCAAACAAGAT
GTTCTGTTGAAGCTGAGGCACAAGGGTGGTTGGAAGAACGACCCTGACCT
CGTCATGGATACCATCGTAGATGCTGCCAAGGAGTGGCGGAAGGTGGAGG
CTATGCAGAGGCCACCCGCTGCCTCGAAGGATGCTCCGCGCCAGCAGGGT
GCGAAGTCGTCCAAGCAGTCGTCGATTGTATGTCATGGGTGCGGCCAGAA
AGGCCACTATCTTTCACAATGCTCTGCGTCGTCAGGGGTGGCGCAGGGGC
AATCTGGTGGTTCTACATCTCCACAGCAGCGTACTCGTGGAAGTCGGAAA
GGAAATGGCCACAATCGCGGAGGCGGCGGTTCCTCTGGCGGTGGCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11963:1358..1905+

>mRNA_H-canaliculatus_F_contig11963.1717.1 ID=mRNA_H-canaliculatus_F_contig11963.1717.1|Name=mRNA_H-canaliculatus_F_contig11963.1717.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1080bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11963:1358..1905+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGATAGACAGGGGACGACGATGCTGGAAAGGGTGGAGCCCATTTTGTC
TGGTTTGGAAACTTTCTTCGCAGAAAATCCGAATTTCGAGGCGCTTTATC
GCTCCCCTGAAGGCTCGTATATCAAGGGCCCGGCGGAGATCATTACAAAG
GCGTTGGTGGAAGGACTTTCGCCTGAAAAGTTCAAACAAGATGTTCTGTT
GAAGCTGAGGCACAAGGGTGGTTGGAAGAACGACCCTGACCTCGTCATGG
ATACCATCGTAGATGCTGCCAAGGAGTGGCGGAAGGTGGAGGCTATGCAG
AGGCCACCCGCTGCCTCGAAGGATGCTCCGCGCCAGCAGGGTGCGAAGTC
GTCCAAGCAGTCGTCGATTGTATGTCATGGGTGCGGCCAGAAAGGCCACT
ATCTTTCACAATGCTCTGCGTCGTCAGGGGTGGCGCAGGGGCAATCTGGT
GGTTCTACATCTCCACAGCAGCGTACTCGTGGAAGTCGGAAAGGAAATGG
CCACAATCGCGGAGGCGGCGGTTCCTCTGGCGGTGGCGGCATGGATAGAC
AGGGGACGACGATGCTGGAAAGGGTGGAGCCCATTTTGTCTGGTTTGGAA
ACTTTCTTCGCAGAAAATCCGAATTTCGAGGCGCTTTATCGCTCCCCTGA
AGGCTCGTATATCAAGGGCCCGGCGGAGATCATTACAAAGGCGTTGGTGG
AAGGACTTTCGCCTGAAAAGTTCAAACAAGATGTTCTGTTGAAGCTGAGG
CACAAGGGTGGTTGGAAGAACGACCCTGACCTCGTCATGGATACCATCGT
AGATGCTGCCAAGGAGTGGCGGAAGGTGGAGGCTATGCAGAGGCCACCCG
CTGCCTCGAAGGATGCTCCGCGCCAGCAGGGTGCGAAGTCGTCCAAGCAG
TCGTCGATTGTATGTCATGGGTGCGGCCAGAAAGGCCACTATCTTTCACA
ATGCTCTGCGTCGTCAGGGGTGGCGCAGGGGCAATCTGGTGGTTCTACAT
CTCCACAGCAGCGTACTCGTGGAAGTCGGAAAGGAAATGGCCACAATCGC
GGAGGCGGCGGTTCCTCTGGCGGTGGCGGC
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