mRNA_H-canaliculatus_F_contig1196.1714.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1196.1714.1
Unique NamemRNA_H-canaliculatus_F_contig1196.1714.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1196.1714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1196contigH-canaliculatus_F_contig1196:24905..25436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size532
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1196.1714.1prot_H-canaliculatus_F_contig1196.1714.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1196 24971..25345 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928899.6860077-UTR-H-canaliculatus_F_contig1196:24904..249701622928899.6860077-UTR-H-canaliculatus_F_contig1196:24904..24970Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1196 24905..24970 +
1696845606.1584485-UTR-H-canaliculatus_F_contig1196:24904..249701696845606.1584485-UTR-H-canaliculatus_F_contig1196:24904..24970Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1196 24905..24970 +
1622928899.71925-UTR-H-canaliculatus_F_contig1196:25345..254361622928899.71925-UTR-H-canaliculatus_F_contig1196:25345..25436Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1196 25346..25436 +
1696845606.178797-UTR-H-canaliculatus_F_contig1196:25345..254361696845606.178797-UTR-H-canaliculatus_F_contig1196:25345..25436Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1196 25346..25436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928899.7026088-CDS-H-canaliculatus_F_contig1196:24970..253451622928899.7026088-CDS-H-canaliculatus_F_contig1196:24970..25345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1196 24971..25345 +
1696845606.1697285-CDS-H-canaliculatus_F_contig1196:24970..253451696845606.1697285-CDS-H-canaliculatus_F_contig1196:24970..25345Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1196 24971..25345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1196.1714.1

>prot_H-canaliculatus_F_contig1196.1714.1 ID=prot_H-canaliculatus_F_contig1196.1714.1|Name=mRNA_H-canaliculatus_F_contig1196.1714.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
MLHLVSVDRIGLGCTASCCGITFGLASRAEKASVTAQESIMPPRPSPRAG
RFESLIDGAYFVLVNFIARQELLGFRIPFTKTQELLEWWLFAWNSIDKST
STPPPATNRSGRTQVAKKRFSLEG*
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mRNA from alignment at H-canaliculatus_F_contig1196:24905..25436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1196.1714.1 ID=mRNA_H-canaliculatus_F_contig1196.1714.1|Name=mRNA_H-canaliculatus_F_contig1196.1714.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=532bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1196:24905..25436+ (Hapterophycus canaliculatus Oshoro5f female)
AAGACGCCGCTGCTGGGATCATGAGCGACACACAACCGCTTGGAGCTGAA
GATGTAGCTGCTGCCGATGCTCCACCTGGTTTCTGTAGACAGGATTGGCT
TGGGTTGCACTGCCAGCTGTTGCGGGATCACGTTTGGACTTGCCTCACGT
GCGGAGAAAGCTTCGGTGACGGCTCAGGAATCGATTATGCCACCTCGGCC
AAGTCCGCGTGCAGGAAGATTCGAATCGCTTATTGATGGCGCTTACTTCG
TCCTGGTCAATTTCATAGCTCGCCAGGAACTCCTTGGTTTCAGGATCCCC
TTCACGAAGACGCAAGAACTTTTGGAGTGGTGGCTTTTCGCGTGGAACTC
CATAGACAAGAGTACCTCCACCCCCCCGCCCGCAACCAACCGTAGCGGGC
GCACCCAAGTCGCCAAAAAGCGATTTTCTTTAGAGGGCTGAAAAGGAGAG
AGCACTTCGCAAGCTGTGGTGCAGCCGAGTGGCCTGCGAGCGCGTCCAGA
GTTTTCTAACGATTGGCAACGATGATTCGTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1196:24905..25436+

>mRNA_H-canaliculatus_F_contig1196.1714.1 ID=mRNA_H-canaliculatus_F_contig1196.1714.1|Name=mRNA_H-canaliculatus_F_contig1196.1714.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1196:24905..25436+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCCACCTGGTTTCTGTAGACAGGATTGGCTTGGGTTGCACTGCCAG
CTGTTGCGGGATCACGTTTGGACTTGCCTCACGTGCGGAGAAAGCTTCGG
TGACGGCTCAGGAATCGATTATGCCACCTCGGCCAAGTCCGCGTGCAGGA
AGATTCGAATCGCTTATTGATGGCGCTTACTTCGTCCTGGTCAATTTCAT
AGCTCGCCAGGAACTCCTTGGTTTCAGGATCCCCTTCACGAAGACGCAAG
AACTTTTGGAGTGGTGGCTTTTCGCGTGGAACTCCATAGACAAGAGTACC
TCCACCCCCCCGCCCGCAACCAACCGTAGCGGGCGCACCCAAGTCGCCAA
AAAGCGATTTTCTTTAGAGGGCTGAATGCTCCACCTGGTTTCTGTAGACA
GGATTGGCTTGGGTTGCACTGCCAGCTGTTGCGGGATCACGTTTGGACTT
GCCTCACGTGCGGAGAAAGCTTCGGTGACGGCTCAGGAATCGATTATGCC
ACCTCGGCCAAGTCCGCGTGCAGGAAGATTCGAATCGCTTATTGATGGCG
CTTACTTCGTCCTGGTCAATTTCATAGCTCGCCAGGAACTCCTTGGTTTC
AGGATCCCCTTCACGAAGACGCAAGAACTTTTGGAGTGGTGGCTTTTCGC
GTGGAACTCCATAGACAAGAGTACCTCCACCCCCCCGCCCGCAACCAACC
GTAGCGGGCGCACCCAAGTCGCCAAAAAGCGATTTTCTTTAGAGGGCTGA
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