mRNA_H-canaliculatus_F_contig1196.1712.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1196.1712.1
Unique NamemRNA_H-canaliculatus_F_contig1196.1712.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1196.1712.1 vs. uniprot
Match: A0A6H5L2M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M7_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 7.400e-60
Identity = 91/124 (73.39%), Postives = 102/124 (82.26%), Query Frame = 1 
Query:   49 ESRWSKALESVRKDVECFFGILKGRFRILKLGILFHDRDAIDYMFFTCCTLHNMLHAFDGLDELEPTVDRGGKEGLHEPWDHAPLLDERTVGSTSP-PTDDKDGSTLPEAAHFVLKNALIKHFE 417
            ES+WSKA ESVR+DVECFFGILKGRFRILKLGILF D++ ID +FFTCCT HN+LHAFDGLDELE   D GG+ GLH+ WD+ PLLDE TVGSTSP P DD   +T+PEAAH  LKNALI H E
Sbjct:    2 ESKWSKAPESVREDVECFFGILKGRFRILKLGILFQDKNVIDNLFFTCCTSHNVLHAFDGLDELETVEDWGGRAGLHDAWDNDPLLDESTVGSTSPTPADDDGTTTIPEAAHEELKNALIAHVE 125
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BLAST of mRNA_H-canaliculatus_F_contig1196.1712.1 vs. uniprot
Match: A0A6H5KML5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML5_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 6.540e-55
Identity = 90/129 (69.77%), Postives = 102/129 (79.07%), Query Frame = 1 
Query:   40 SDEESRWSKALESVRKDVECFFGILKGRFRILKLGILFHDRDAIDYMFFTCCTLHNMLHAFDGLDELEPTVDRGGKEGL--HEPWDHAPLLDERTVGSTSP-PTDDKDGSTLPEAAHFVLKNALIKHFE 417
            +D ES+WSKALESVRKDVE FFGILKGRFRILKLGILF   + ID +FFTCCTLH+MLHAFDGLDELE   + GG+ GL  H  WD+ PLLD+ TVGSTSP P DD   +T P+AAH  LKNAL+ HFE
Sbjct:    4 TDMESKWSKALESVRKDVEYFFGILKGRFRILKLGILFQHENVIDNLFFTCCTLHSMLHAFDGLDELETVKEWGGRAGLGLHGTWDNDPLLDDSTVGSTSPTPADDDGTTTTPQAAHEELKNALMTHFE 132
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BLAST of mRNA_H-canaliculatus_F_contig1196.1712.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 8.280e-45
Identity = 75/146 (51.37%), Postives = 95/146 (65.07%), Query Frame = 1 
Query:    1 QWEILIPPSKWPGSDEESRWSKALESVRKDVECFFGILKGRFRILKLGILFHDRDAIDYMFFTCCTLHNMLHAFDGLDELEPTVDRGGKEGLHEPWDHAPLLDERTVGSTSPPTDDKDGSTLPEA--------AHFVLKNALIKHF 414
            QW  LI PSK+P + E++ +S+ LESVRKDVECFF ILKGRFRILKL + +  ++ ID +F TCC LHNMLH FDG+D  E  VD  G  GLH+PWDH PL D  ++GST   ++ + G    E+        AH  LK  LI+ F
Sbjct:   11 QWVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFDILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESF 156
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BLAST of mRNA_H-canaliculatus_F_contig1196.1712.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.970e-44
Identity = 75/145 (51.72%), Postives = 95/145 (65.52%), Query Frame = 1 
Query:    4 WEILIPPSKWPGSDEESRWSKALESVRKDVECFFGILKGRFRILKLGILFHDRDAIDYMFFTCCTLHNMLHAFDGLDELEPTVDRGGKEGLHEPWDHAPLLDERTVGSTSPPTDDKDGSTLPEA--------AHFVLKNALIKHF 414
            W  LI PSK+P + E++ +S+ LESVRKDVECFFGILKGRFRILKL + +  ++ ID +F TCC LHNMLH FDG+D  E  VD  G  GLH+PWDH PL D  ++GST   ++ + G    E+        AH  LK  LI+ F
Sbjct:    2 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESF 146
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BLAST of mRNA_H-canaliculatus_F_contig1196.1712.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 2.710e-42
Identity = 75/146 (51.37%), Postives = 96/146 (65.75%), Query Frame = 1 
Query:    1 QWEILIPPSKWPGSDEESRWSKALESVRKDVECFFGILKGRFRILKLGILFHDRDAIDYMFFTCCTLHNMLHAFDGLDELEPTVDRGGKEGLHEPWDHAPLLDERTVGSTSPPTDDKDGSTLPEA--------AHFVLKNALIKHF 414
            +W  LI PSK+P + E++ +S+ LESVRKDVECFFGILKGRFRILKL + +  +  ID +F+TCC LHNMLH FDG+D  E  VD  G  GLH+PWDH PL D  ++GST   ++ + G    E+        AH  LK  LI+ F
Sbjct:  332 KWVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKKDIDNIFYTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESF 477
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BLAST of mRNA_H-canaliculatus_F_contig1196.1712.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 7.890e-40
Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = 1 
Query:    1 QWEILIPPSKWPGSDEESRWSKALESVRKDVECFFGILKGRFRILKLGILFHDRDAIDYMFFTCCTLHNMLHAFDGLDELEPTVDRGGKEGLHEPWDHAPLLDERTVGS 327
            +W  LI PSK+P S++++ +S+ LESVRKDVECFFGILKGRFRILKL + +H R+ ID +FFTCC LHNMLH FDGLD  +   D  G  G H+ W+H PL D  +VGS
Sbjct:   93 EWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFDENTDWTGSAGHHDAWEHDPLTDYTSVGS 201
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BLAST of mRNA_H-canaliculatus_F_contig1196.1712.1 vs. uniprot
Match: A0A6H5K9X5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X5_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.640e-39
Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:   10 ILIPPSKWPG--------SDEESRWSKALESVRKDVECFFGILKGRFRILKLGILFHDRDAIDYMFFTCCTLHNMLHAFDGLDELEPTVDRGGKEGLHEPWDHAPLL 306
            + +PP ++ G        +D ES+W KAL SVRK VECFFGILKGRFRILKLGILF D++ ID +FFTCCTLHNMLHAFDGLDELE   + GG+ GLH+ WD+ PLL
Sbjct:  355 VNVPPLEYAGELWEGKKKTDMESKWCKALASVRKYVECFFGILKGRFRILKLGILFQDKNVIDNLFFTCCTLHNMLHAFDGLDELESAEEWGGRAGLHDAWDNDPLL 461
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BLAST of mRNA_H-canaliculatus_F_contig1196.1712.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 7.460e-37
Identity = 66/138 (47.83%), Postives = 85/138 (61.59%), Query Frame = 1 
Query:    1 QWEILIPPSKWPGSDEESRWSKALESVRKDVECFFGILKGRFRILKLGILFHDRDAIDYMFFTCCTLHNMLHAFDGLDELEPTVDRGGKEGLHEPWDHAPLLDERTVGSTSPPTDDKDGSTLPEAAHFVLKNALIKHF 414
            +W  LIPPSK+P    +  +SK LESVRKDVECFFGI+KG FRILKL I +H ++ ID +FFTCC LHNMLH++D   E+E   +  G  GLH  W+H P LD  +VG+       +D     E+     +  LI  F
Sbjct:   93 KWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEV--ESGFNTRRKQLIASF 228
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BLAST of mRNA_H-canaliculatus_F_contig1196.1712.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 7.710e-36
Identity = 67/138 (48.55%), Postives = 86/138 (62.32%), Query Frame = 1 
Query:    1 QWEILIPPSKWPGSDEESRWSKALESVRKDVECFFGILKGRFRILKLGILFHDRDAIDYMFFTCCTLHNMLHAFDGLDELEPTVDRGGKEGLHEPWDHAPLLDERTVGSTSPPTDDKDGSTLPEAAHFVLKNALIKHF 414
            +W  LIPPSK+P    +  +SK LESVRKDVECFFGI+KGRFRILKL I +H ++ ID +FFTCC LHNMLH++D   E+E   +  G  GLH  W+H P LD  +VG+       +D     E+     +  LI  F
Sbjct:  334 KWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEV--ESGFNTRRKQLIASF 469
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BLAST of mRNA_H-canaliculatus_F_contig1196.1712.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.750e-33
Identity = 67/138 (48.55%), Postives = 83/138 (60.14%), Query Frame = 1 
Query:    1 QWEILIPPSKWPGSDEESRWSKALESVRKDVECFFGILKGRFRILKLGILFHDRDAIDYMFFTCCTLHNMLHAFDGLDELEPTVDRGGKEGLHEPWDHAPLLDERTVGSTSPPTDDKDGSTLPEAAHFVLKNALIKHF 414
            +W+ILI PSK+P S+ +  +SK LESVRKDVECFFGILKGR RIL L + F  ++ ID +FFTCC LHNMLH FDG+D+L    +     G+       P  D  +VG     T D +G    EA H V K  L   F
Sbjct:  136 KWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTSVTEPEADSGSVG-----TKDVNGRPQVEAGHAVRKRQLTTSF 268
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1196.1712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2M7_9PHAE7.400e-6073.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KML5_9PHAE6.540e-5569.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L135_9PHAE8.280e-4551.37Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMK5_9PHAE1.970e-4451.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5C1_9PHAE2.710e-4251.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE7.890e-4059.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9X5_9PHAE2.640e-3964.49DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JTC6_9PHAE7.460e-3747.83DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE7.710e-3648.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI1.750e-3348.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1196contigH-canaliculatus_F_contig1196:8538..8954 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue6.4e-27
Seed eggNOG ortholog2880.D7FSK2
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928899.7723806-CDS-H-canaliculatus_F_contig1196:8537..89541622928899.7723806-CDS-H-canaliculatus_F_contig1196:8537..8954Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1196 8538..8954 -
1696845606.1892893-CDS-H-canaliculatus_F_contig1196:8537..89541696845606.1892893-CDS-H-canaliculatus_F_contig1196:8537..8954Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1196 8538..8954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1196.1712.1prot_H-canaliculatus_F_contig1196.1712.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1196 8538..8954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1196.1712.1

>prot_H-canaliculatus_F_contig1196.1712.1 ID=prot_H-canaliculatus_F_contig1196.1712.1|Name=mRNA_H-canaliculatus_F_contig1196.1712.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=139bp
QWEILIPPSKWPGSDEESRWSKALESVRKDVECFFGILKGRFRILKLGIL
FHDRDAIDYMFFTCCTLHNMLHAFDGLDELEPTVDRGGKEGLHEPWDHAP
LLDERTVGSTSPPTDDKDGSTLPEAAHFVLKNALIKHFE
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mRNA from alignment at H-canaliculatus_F_contig1196:8538..8954-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1196.1712.1 ID=mRNA_H-canaliculatus_F_contig1196.1712.1|Name=mRNA_H-canaliculatus_F_contig1196.1712.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=417bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1196:8538..8954- (Hapterophycus canaliculatus Oshoro5f female)
CAGTGGGAAATCCTCATCCCCCCTAGCAAGTGGCCCGGCTCGGACGAGGA
GAGCAGATGGAGCAAAGCACTGGAGAGCGTCCGCAAGGATGTAGAGTGTT
TTTTCGGCATCCTGAAGGGTCGCTTCAGGATTTTGAAGCTGGGTATCTTG
TTTCACGACAGGGACGCCATTGACTACATGTTCTTTACATGCTGTACGTT
GCACAATATGCTGCATGCGTTCGACGGGCTTGACGAGTTGGAGCCAACGG
TAGATAGGGGGGGTAAGGAGGGCCTCCACGAGCCCTGGGACCACGCGCCT
TTGCTGGACGAGCGTACAGTTGGATCAACATCCCCGCCTACTGACGACAA
GGACGGCAGCACGTTGCCAGAAGCGGCCCACTTCGTGTTGAAGAACGCGC
TTATCAAACACTTCGAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1196:8538..8954-

>mRNA_H-canaliculatus_F_contig1196.1712.1 ID=mRNA_H-canaliculatus_F_contig1196.1712.1|Name=mRNA_H-canaliculatus_F_contig1196.1712.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=834bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1196:8538..8954- (Hapterophycus canaliculatus Oshoro5f female)
CAGTGGGAAATCCTCATCCCCCCTAGCAAGTGGCCCGGCTCGGACGAGGA
GAGCAGATGGAGCAAAGCACTGGAGAGCGTCCGCAAGGATGTAGAGTGTT
TTTTCGGCATCCTGAAGGGTCGCTTCAGGATTTTGAAGCTGGGTATCTTG
TTTCACGACAGGGACGCCATTGACTACATGTTCTTTACATGCTGTACGTT
GCACAATATGCTGCATGCGTTCGACGGGCTTGACGAGTTGGAGCCAACGG
TAGATAGGGGGGGTAAGGAGGGCCTCCACGAGCCCTGGGACCACGCGCCT
TTGCTGGACGAGCGTACAGTTGGATCAACATCCCCGCCTACTGACGACAA
GGACGGCAGCACGTTGCCAGAAGCGGCCCACTTCGTGTTGAAGAACGCGC
TTATCAAACACTTCGAACAGTGGGAAATCCTCATCCCCCCTAGCAAGTGG
CCCGGCTCGGACGAGGAGAGCAGATGGAGCAAAGCACTGGAGAGCGTCCG
CAAGGATGTAGAGTGTTTTTTCGGCATCCTGAAGGGTCGCTTCAGGATTT
TGAAGCTGGGTATCTTGTTTCACGACAGGGACGCCATTGACTACATGTTC
TTTACATGCTGTACGTTGCACAATATGCTGCATGCGTTCGACGGGCTTGA
CGAGTTGGAGCCAACGGTAGATAGGGGGGGTAAGGAGGGCCTCCACGAGC
CCTGGGACCACGCGCCTTTGCTGGACGAGCGTACAGTTGGATCAACATCC
CCGCCTACTGACGACAAGGACGGCAGCACGTTGCCAGAAGCGGCCCACTT
CGTGTTGAAGAACGCGCTTATCAAACACTTCGAA
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