mRNA_H-canaliculatus_F_contig11959.1710.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11959.1710.1
Unique NamemRNA_H-canaliculatus_F_contig11959.1710.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: D7FZ71_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ71_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 2.950e-49
Identity = 118/163 (72.39%), Postives = 122/163 (74.85%), Query Frame = 1
Query:  286 LAGEAFFRP---PSE------AXXXXXLAGAGAGSRAAPVSRSAAN--TGXXXXRRIGGDGXXXXXXXXXXXXXTGVLEPPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQE 741
            LA EAF RP   PS+      A  XXX+AG  AGSRA PVSRSAAN  TG    R+ G +G                LE PVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQE
Sbjct:   57 LASEAFGRPYGPPSDDFAGGPAAAXXXVAGM-AGSRA-PVSRSAANAGTGAGRRRQRGEEGGGRAGGDES-------LEAPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQE 210          
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A6H5LCQ5_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ5_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 6.150e-48
Identity = 112/169 (66.27%), Postives = 114/169 (67.46%), Query Frame = 1
Query:  286 LAGEAFFR---PPSE-----AXXXXXLAGAGAGSRAAPVSRSAANTGXXXXRRI---------GGDGXXXXXXXXXXXXXTGVLEPPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQE 741
            LA EAF R   PPS+           +A AG     APVSRSAAN G    RR          GG G                LE PVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQE
Sbjct:   39 LASEAFGRSYGPPSDDFAGGPAAAAEVAAAGMTVSRAPVSRSAANAGTGAGRREARPRSLREEGGGGAGGDES----------LEAPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQE 197          
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A6H5JUY3_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY3_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 5.250e-30
Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 1
Query:  499 TPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADR 723
            T  RRRGR+G+S+YRGVCVTREGKWRAVIYKERKQLYLGVYESE++AAKAHDRAARFHF D ++ NF +E EADR
Sbjct:   94 TTHRRRGRRGKSVYRGVCVTREGKWRAVIYKERKQLYLGVYESEVDAAKAHDRAARFHFADSAVCNFDSEHEADR 168          
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A836CI56_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI56_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.090e-28
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1
Query:  508 RRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 699
            RRRGRKG+SIYRGVCVTREGKWRAVIYKERKQLYLGV+ESE++AAKAHDRAAR+HF  ++M NF
Sbjct:   21 RRRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 84          
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A836CH07_9STRA (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH07_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.730e-24
Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 1
Query:  538 YRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 699
            YRGVCVTREGKWRAVIYKERKQLYLGV+ESE++AAKAHDRAAR HF D++M NF
Sbjct:    1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 54          
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A6H5KQM0_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM0_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.850e-15
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  490 PPVTPRR-----RRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 699
            PPVTP R     RRG +G+S ++GVC+TR GKWRAVIY  RKQ YLGV++SE +AA+A+D AA  HF + +  NF
Sbjct:  387 PPVTPVRVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNF 461          
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A6V1UZI2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UZI2_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 4.570e-15
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  490 PPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 699
            P V    RRG +G+S ++GVCVTR GKWR+VIY  RKQLYLGV+E+E EAAKA+D +A  +F D ++ NF
Sbjct:  136 PRVQSAGRRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNF 205          
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A7S3Y6J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6J2_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 5.500e-15
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  490 PPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 699
            P V    RRG +G+S ++GVCVTR GKWR+VIY  RKQLYLGV+E+E EAAKA+D +A  +F D ++ NF
Sbjct:  149 PRVQSAGRRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNF 218          
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A835ZDL0_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.920e-14
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1
Query:  505 RRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEA 717
            R RRGRKG+SIYRGV  TREGK+RAV+Y ERKQ+YLGVY  E+ AA+AHD+    H    +  NF  E  A
Sbjct:  123 RPRRGRKGKSIYRGVSHTREGKYRAVLYVERKQIYLGVYNDEVSAARAHDKGVLAHGLGHAYLNFKLEEAA 193          
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: D8LFR4_ECTSI (Pathogenesis-related transcriptional factor and ERF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR4_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.680e-13
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  511 RRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 699
            RRG +G+S ++GVC+TR GKWRAVIY  RKQ YLGV++SE +AA+A+D AA  HF + +  NF
Sbjct:  341 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNF 403          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ71_ECTSI2.950e-4972.39AP2/ERF domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5LCQ5_9PHAE6.150e-4866.27AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JUY3_9PHAE5.250e-3080.00AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
A0A836CI56_9STRA2.090e-2884.38AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CH07_9STRA5.730e-2485.19AP2/ERF domain-containing protein (Fragment) n=1 T... [more]
A0A6H5KQM0_9PHAE2.850e-1557.33AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. ... [more]
A0A6V1UZI2_HETAK4.570e-1558.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6J2_HETAK5.500e-1558.57Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZDL0_9STRA2.920e-1459.15AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]
D8LFR4_ECTSI1.680e-1358.73Pathogenesis-related transcriptional factor and ER... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11959contigH-canaliculatus_F_contig11959:1511..3899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue2.7e-12
Seed eggNOG ortholog2880.D8LFR4
Preferred nameAP2
KEGG koko:K09284
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007275,GO:0007389,GO:0008150,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009908,GO:0010073,GO:0010093,GO:0010154,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0022414,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0035670,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048316,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048444,GO:0048449,GO:0048467,GO:0048481,GO:0048507,GO:0048608,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061458,GO:0065007,GO:0080090,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0090701,GO:0099402,GO:0140110,GO:1903506,GO:1905392,GO:1905393,GO:2000112,GO:2001141
EggNOG free text desc.specification of floral organ identity
EggNOG OGs28UNB@1,2QQXB@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons5
Model size741
Cds size741
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11959.1710.1prot_H-canaliculatus_F_contig11959.1710.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11959 1511..3899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928899.3658075-CDS-H-canaliculatus_F_contig11959:1510..15931622928899.3658075-CDS-H-canaliculatus_F_contig11959:1510..1593Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11959 1511..1593 +
1696845606.0700467-CDS-H-canaliculatus_F_contig11959:1510..15931696845606.0700467-CDS-H-canaliculatus_F_contig11959:1510..1593Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11959 1511..1593 +
1622928899.3804855-CDS-H-canaliculatus_F_contig11959:1668..18961622928899.3804855-CDS-H-canaliculatus_F_contig11959:1668..1896Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11959 1669..1896 +
1696845606.0823321-CDS-H-canaliculatus_F_contig11959:1668..18961696845606.0823321-CDS-H-canaliculatus_F_contig11959:1668..1896Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11959 1669..1896 +
1622928899.397398-CDS-H-canaliculatus_F_contig11959:2040..22061622928899.397398-CDS-H-canaliculatus_F_contig11959:2040..2206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11959 2041..2206 +
1696845606.0922728-CDS-H-canaliculatus_F_contig11959:2040..22061696845606.0922728-CDS-H-canaliculatus_F_contig11959:2040..2206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11959 2041..2206 +
1622928899.4166873-CDS-H-canaliculatus_F_contig11959:2419..25451622928899.4166873-CDS-H-canaliculatus_F_contig11959:2419..2545Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11959 2420..2545 +
1696845606.1024399-CDS-H-canaliculatus_F_contig11959:2419..25451696845606.1024399-CDS-H-canaliculatus_F_contig11959:2419..2545Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11959 2420..2545 +
1622928899.432396-CDS-H-canaliculatus_F_contig11959:3761..38991622928899.432396-CDS-H-canaliculatus_F_contig11959:3761..3899Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11959 3762..3899 +
1696845606.1119428-CDS-H-canaliculatus_F_contig11959:3761..38991696845606.1119428-CDS-H-canaliculatus_F_contig11959:3761..3899Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11959 3762..3899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11959.1710.1

>prot_H-canaliculatus_F_contig11959.1710.1 ID=prot_H-canaliculatus_F_contig11959.1710.1|Name=mRNA_H-canaliculatus_F_contig11959.1710.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=247bp
MLREAGASSEDDDEEGSGGGGGSGGGTRRNSSSSSNNNHNSSNSGGGIDA
GVPSMSPPQRQRQQQQQQQQRPPPPLPPSPSPPSSPSSVAAAAAVLAGEA
FFRPPSEAAAAAALAGAGAGSRAAPVSRSAANTGTGSGRRIGGDGGGGRG
GGRGGGRGTGVLEPPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERK
QLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQE
back to top

mRNA from alignment at H-canaliculatus_F_contig11959:1511..3899+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11959.1710.1 ID=mRNA_H-canaliculatus_F_contig11959.1710.1|Name=mRNA_H-canaliculatus_F_contig11959.1710.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2389bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11959:1511..3899+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCCGCGAGGCAGGGGCCTCTTCAGAAGATGATGATGAGGAAGGGAG CGGCGGCGGCGGCGGCAGCGGCGGCGGCACGCGGTATGGACGGCGCCAGC GAACCGGCGCTGCTCCCCCCGCATCTTCGCGAACCCCTGCCGCGGCAATC AGCAACAGCAGAAACAGCAGCAGCAGCAGCAACAACAACCACAACAGCAG CAACAGCGGCGGCGGCATCGACGCCGGCGTGCCGTCCATGTCGCCGCCCC AGCGGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCGGCCGCCGCCGCCG CTGCCGCCGTCGCCGTCGCCGCCTTCGTCCCCTTCGTCCGTCGCGGCGGC TGCCGCCGTCCTGGCCGGGGAGGCGTTCTTCAGACCGTCGGCGATGCAGC GGCAGCAGCTGCAGCAGCAGCAACACCAGCAGCAACAGCTGCAACAGCAG CAGCAGCAACATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCACCTCTTCAGTCCGTCGGAGGCGGCGGCGG CGGCGGCGCTAGCGGGAGCCGGAGCAGGCTCGAGAGCCGCCCCCGTGTCC AGATCAGCGGCGAACACCGGTACTGGGTCGGGACGAAGAATAGGCGGCGA CGGCGGCGGGGGACGAGGAGGGGGCAGGGGAGGAGGAAGGGGCACTGTCG CAAGAGGGGGAGGAAGGGGGGGCAACAGGCAAGTGTCAACCGGCGGGGCC GGCGGCGGCAGAGGAGGGGGCCCGGCGTTTGGCTCCTCGGTGGGGATGGG GAGGATGGCGGCGCCGCAGCAACAGCAGCAGCAACTGCAGCAGCAACTGC AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCGGGAAGGCGAGGGC AGAGGGGAGGGGGTGCTAGAGCCGCCAGTAACGCCGCGCCGCCGACGGGG GCGCAAGGGGCGTTCCATTTACAGAGGCGTTTGCGTAACGAGGGAGGGCA AGTGGCGCGCCGTGATCTACAAGGAGCGCAAGCAGGTGCGCGTGTGTTTT TCTTTTTTTGGGGGGGGAAGTGTAGCGCTCATGGGCCGTGGAGTGAGACA GGCAGGCGAGCGGGCGGACGGTAGATGCGGCGGTCATGGAGGCGGCACCT GCGCCCTGTTTGGGCCACCGGCGGCGGTGGGGTGGATGAGGGAGGGAGGG ATGGGGTGGGAGACCATTTTTATGTTGGTTTTACTGCGGACGGTGGCCGG GCCTGTTTCCACTGATTTATCGGTTTTTTATCCTCACGAGGCGTCATTTC GTTGTTTCCACCTGGCGCAACGGAGGTTTGGCGTGAAAAGGAAAAGCGCT TTGCTGCGTCGGCGGTTTTCGTGGGGGCGGAGGCGTGCATGCGTGTTCGC GGTGGGGCGTGAATGTTATCTCTTTTTTTTGTTAGCTCTCTTTGATTTTT GTGCTCGGTGAGAGGTTACGTAAGCCGTTGGTGTAGCCGGTTGCTGGTGT TCTATACTGGATGCTGCGCTGTATCGATTCTGGTGGTTGTTGTGTGTGTG TGTGTGCGTGCATGTCTGTCGGTCGATCCCCTTGGCCGGCCGACGAAGTA AAACACTCGAACTTCCTCAGCCCCAGCGAAGTTCGAACAAGGGCAGAGGG CATGAGGGATACAGGAGCGCGTGTGCCACACGTGTCCGTGTGTGCTTTCT CTAAGAGGGCCGTGACCATTCAGCCACTTTCCACTCCCAGATGATGATGA CACAGTAGCGTCTCCATCAACAGCAACAAGCAAGCAAGATGGTGACGCGC CAGGGCGCTGTACCTCGATGAACGCTTCCATGCTGCGGTCGGCTTTCTTT GCCTGGCCTCGGCATGCCTCGATCTATCAGTCCGGGCGGGTTGGCTCCCC ACCTGGGTGTGGTGTGGTGTGGTGTGGTGTGTGGTGTGCGGTGTGCAGCG AGGTAGCGGGGACGTCGTCCCTTTCCGCTCTTCACTTTGTCACTGTGTCG CTACCTCCCGCCCGACGTCCTGTTCGCCCCCCCCTCCCCCGCCCGGTCCC CCCGCTTCTGGGTGGCGCTTGCTACGACCCAAGACTTCTTTTCCTGTTTG GCCTCGGGAGATCGTTGTTTTTACGCCGGAGCACGGCCGCCCGATCACCA CCATCTCACGTGATCCTCTCTGTCTCTCTCTCTCTGTCTCTCTCTCTCCA TATATCTCTATCTCTCACTGCCCCGCCTGCACGCCATCGTTTGTGCGAAA GCTCTACCTGGGCGTGTACGAGTCCGAGCTAGAGGCGGCGAAGGCACACG ACCGGGCCGCTCGTTTCCACTTCCCCGACAAGTCCATGACGAACTTTGCC ACGGAGGCGGAGGCTGACCGGGTCATCGCCGAGCAAGAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11959:1511..3899+

>mRNA_H-canaliculatus_F_contig11959.1710.1 ID=mRNA_H-canaliculatus_F_contig11959.1710.1|Name=mRNA_H-canaliculatus_F_contig11959.1710.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1482bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11959:1511..3899+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCCGCGAGGCAGGGGCCTCTTCAGAAGATGATGATGAGGAAGGGAG
CGGCGGCGGCGGCGGCAGCGGCGGCGGCACGCGATGCTCCGCGAGGCAGG
GGCCTCTTCAGAAGATGATGATGAGGAAGGGAGCGGCGGCGGCGGCGGCA
GCGGCGGCGGCACGCGCAGAAACAGCAGCAGCAGCAGCAACAACAACCAC
AACAGCAGCAACAGCGGCGGCGGCATCGACGCCGGCGTGCCGTCCATGTC
GCCGCCCCAGCGGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCGGCCGC
CGCCGCCGCTGCCGCCGTCGCCGTCGCCGCCTTCGTCCCCTTCGTCCGTC
GCGGCGGCTGCCGCCGTCCTGGCCGGGGAGGCGTTCTTCAGACCCAGAAA
CAGCAGCAGCAGCAGCAACAACAACCACAACAGCAGCAACAGCGGCGGCG
GCATCGACGCCGGCGTGCCGTCCATGTCGCCGCCCCAGCGGCAGCGGCAG
CAGCAGCAGCAGCAGCAGCAGCGGCCGCCGCCGCCGCTGCCGCCGTCGCC
GTCGCCGCCTTCGTCCCCTTCGTCCGTCGCGGCGGCTGCCGCCGTCCTGG
CCGGGGAGGCGTTCTTCAGACCTCCGTCGGAGGCGGCGGCGGCGGCGGCG
CTAGCGGGAGCCGGAGCAGGCTCGAGAGCCGCCCCCGTGTCCAGATCAGC
GGCGAACACCGGTACTGGGTCGGGACGAAGAATAGGCGGCGACGGCGGCG
GGGGACGAGGAGGGGGCAGGGGAGGAGGAAGGGGCACTTCCGTCGGAGGC
GGCGGCGGCGGCGGCGCTAGCGGGAGCCGGAGCAGGCTCGAGAGCCGCCC
CCGTGTCCAGATCAGCGGCGAACACCGGTACTGGGTCGGGACGAAGAATA
GGCGGCGACGGCGGCGGGGGACGAGGAGGGGGCAGGGGAGGAGGAAGGGG
CACTGGGGTGCTAGAGCCGCCAGTAACGCCGCGCCGCCGACGGGGGCGCA
AGGGGCGTTCCATTTACAGAGGCGTTTGCGTAACGAGGGAGGGCAAGTGG
CGCGCCGTGATCTACAAGGAGCGCAAGCAGGGGGTGCTAGAGCCGCCAGT
AACGCCGCGCCGCCGACGGGGGCGCAAGGGGCGTTCCATTTACAGAGGCG
TTTGCGTAACGAGGGAGGGCAAGTGGCGCGCCGTGATCTACAAGGAGCGC
AAGCAGCTCTACCTGGGCGTGTACGAGTCCGAGCTAGAGGCGGCGAAGGC
ACACGACCGGGCCGCTCGTTTCCACTTCCCCGACAAGTCCATGACGAACT
TTGCCACGGAGGCGGAGGCTGACCGGGTCATCGCCGAGCAAGAGCTCTAC
CTGGGCGTGTACGAGTCCGAGCTAGAGGCGGCGAAGGCACACGACCGGGC
CGCTCGTTTCCACTTCCCCGACAAGTCCATGACGAACTTTGCCACGGAGG
CGGAGGCTGACCGGGTCATCGCCGAGCAAGAG
back to top