mRNA_H-canaliculatus_F_contig1195.1707.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1195.1707.1
Unique NamemRNA_H-canaliculatus_F_contig1195.1707.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1195.1707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1195contigH-canaliculatus_F_contig1195:22037..24515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size298
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1195.1707.1prot_H-canaliculatus_F_contig1195.1707.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1195 22110..24506 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928898.7669806-UTR-H-canaliculatus_F_contig1195:22036..221091622928898.7669806-UTR-H-canaliculatus_F_contig1195:22036..22109Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1195 22037..22109 +
1696845605.8301678-UTR-H-canaliculatus_F_contig1195:22036..221091696845605.8301678-UTR-H-canaliculatus_F_contig1195:22036..22109Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1195 22037..22109 +
1622928898.87643-UTR-H-canaliculatus_F_contig1195:24506..245151622928898.87643-UTR-H-canaliculatus_F_contig1195:24506..24515Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1195 24507..24515 +
1696845605.8772917-UTR-H-canaliculatus_F_contig1195:24506..245151696845605.8772917-UTR-H-canaliculatus_F_contig1195:24506..24515Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1195 24507..24515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928898.7786431-CDS-H-canaliculatus_F_contig1195:22109..221241622928898.7786431-CDS-H-canaliculatus_F_contig1195:22109..22124Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 22110..22124 +
1696845605.8383963-CDS-H-canaliculatus_F_contig1195:22109..221241696845605.8383963-CDS-H-canaliculatus_F_contig1195:22109..22124Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 22110..22124 +
1622928898.810348-CDS-H-canaliculatus_F_contig1195:23123..231821622928898.810348-CDS-H-canaliculatus_F_contig1195:23123..23182Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 23124..23182 +
1696845605.8473527-CDS-H-canaliculatus_F_contig1195:23123..231821696845605.8473527-CDS-H-canaliculatus_F_contig1195:23123..23182Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 23124..23182 +
1622928898.8226063-CDS-H-canaliculatus_F_contig1195:23574..236371622928898.8226063-CDS-H-canaliculatus_F_contig1195:23574..23637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 23575..23637 +
1696845605.8570735-CDS-H-canaliculatus_F_contig1195:23574..236371696845605.8570735-CDS-H-canaliculatus_F_contig1195:23574..23637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 23575..23637 +
1622928898.837143-CDS-H-canaliculatus_F_contig1195:24427..245061622928898.837143-CDS-H-canaliculatus_F_contig1195:24427..24506Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 24428..24506 +
1696845605.8659167-CDS-H-canaliculatus_F_contig1195:24427..245061696845605.8659167-CDS-H-canaliculatus_F_contig1195:24427..24506Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 24428..24506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1195.1707.1

>prot_H-canaliculatus_F_contig1195.1707.1 ID=prot_H-canaliculatus_F_contig1195.1707.1|Name=mRNA_H-canaliculatus_F_contig1195.1707.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=72bp
MDPVGIFYLSGAGAFGVGYAVMEQRRESTRLQQARNVGADAQRRSRQLIV
YIMWSYWLPSSDCGGPSFLSG*
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mRNA from alignment at H-canaliculatus_F_contig1195:22037..24515+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1195.1707.1 ID=mRNA_H-canaliculatus_F_contig1195.1707.1|Name=mRNA_H-canaliculatus_F_contig1195.1707.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2479bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1195:22037..24515+ (Hapterophycus canaliculatus Oshoro5f female)
GTCGTCCACGCTTCTGGGCCCTACCAGCGCCAGCTCCTTCCGGGACCCAA
TCACAGCAACCGCCCCAGGAGTGATGGACCCAGTTGGGGTAAAGTGCCAC
AAGTTTGACCTCGCCTGACGCCCGATGTACACAACAGTACTCGAACAAGT
ATTTCCTAACCTTGGCACCAAATTTTGGACGAAGAAATGTGGTGAAAAAG
CGTCTTTGAGCGAAGCAAACCTCTGGCGAAGGTAGGAAAGCCGAGAGTAA
GGGTACCGTCAGATAGATATCTGGGCCGACAGTCGTGAAGACATTCCATC
GGAAGAGGAAGCGCTTCGGGTTGAACGGCATAAGTATGTTAGTTGGGCCT
TTCAGCGACTCGGCACGGTTGAACGGGGTACGAAACCATTGCGGCAGGAA
TCCCTTCGAAGAGACACGGTGAGCTATCAAAGAATCATGAACTATGAAAT
GATTCAGGCACGCCTGGCTTCGACGCTCAGCAAGAAAACTGCCTGTCAAC
CAGTGTGGTTCCTCTCGCTGCCAGGCATCGAGTACTGATATTCAGTTCCC
AACACAAGCATGGGACCTAGTTTCTTTTGAATGGGTGTTTGTGTGTGTTC
GTCGACTGGTTCCATCTTGAGTGTGGTGACACAGGCAGCACCCTGAAGAA
CGTCAACACACTTGCCGCCACCGCTTGGGAACAACGGCAGCGATCAAACG
AAGTCGGTATTCTGGATCCCCTGTAGAACTGCTACCCCATACGAAGAGAG
TCAGTACCGACACTAATCGAGTTTGTCTCAGCCGTTAATCAGGAGCAACA
CCGTATGAGGCTTAGACGACGTTAATCTGCCCCTCCCGGTGGCTTTTTCA
CCCCCTTCAAGATGTGTCCCCGATACACGTGTAAGGGTGCTCCGTAAGTT
CCTTCTCCTCCAACAAACTTTCAGGGCGCTCCGCCGACCGCGAAACCGCC
ATTGAACTCCATGTCAAAAACGACGCACGTTTTTTACTTTCTTCCGCCCT
CTCCGTGGTACTTGGTGGCTGCACACCATGCGCCCCAACGTTAATATCAT
AATTTCGTGCCGGTTTGTTGTTCGCTCGCTATCCCAGATATTTTACTTGT
CAGGCGCGGGCGCGTTTGGCGTGGGGTACGCCGTGATGGAACAGCGGTAA
GTAATGACCTTCGCCTGGACAAAAAGGAAAGTACCACCTCCGAGACGAAA
GTGGTGCGAGGCGTGTCGCTGGTCAAATAAATGCAGACAGTCGGCTAGTA
CGAGTCAGGGCTGAATCGCTTCGGTGTGTTGTAGAGATAGGAACGATTTG
CGACAGTGTGTTTGAGGAGACTTTACTTTCTTCCACCTCCGGGGCATCAA
TTTACACACCCTCGTGTCTATCATTCTGGCCGAGGTTAATGAACGCAATC
GATAGTAGCACAATTGGCCTTAACACGTCCTGCCGTCTCACCGCACTCTA
GCAACGTGTGGGCCCGCATACCAGACACCTTTCGTGCCATGTATCGGCCA
CAAATCCCTCTTCTCCCGATACCCTGTCGCATTTACAGAAGGGAGTCGAC
ACGGCTGCAACAGGCACGGAACGTTGGAGCTGATGCTCAACGGAGGAGCA
GGTGTGGACAGGTCTGCCATGTAAGTGACCATGTCATTCTTTTGCTCGCA
GCAGGACTCTTCTTGGCATGAATGCCGCCGTTGTCCTTCGCCAGACCGAG
ACCTTCTACACCACTGTAGGCAAAGAATACCGACACGGTTTATTTGATGT
TGGTTTGGAGTATCAGTGTTCTCGGCACCATGCCTCAACTGCCGTCTTTT
GTAGCTGCGCTTAGGGAGTCACGCTATATTCTTCCTTCTCACTCTGCAGT
ACTCTCTGGGGTACCGCGGGCTTTGAGGCACCTTATGCACTCTTTGTACT
TTTGATCAGGACCGTACCGCTTTGCACATAAATACCCTTGAGTGCTTTGT
GGCTTTTATTCCGACTCATGGTGACAGTATCCCGTAGGATGCGAGACTCA
TCCTATTGTACACTCCGTGGCCCCCCACATTCCTGTTGTCGGTGGAGCAA
CGGATTCGGCCTTAGAAATCGCCTCTTCAGCACTCTTCCCGTTTGATCGG
AACGTACAGATGATTGGCAATTCGTGGTCTTGAAGTGGAGTGGTGACGGC
AGCCCGCAGTAAGTTCGAACGTCAAACGACCGGGTGCAGCCCGACGTGAG
CTGCAAGGTTGAGATACGCGTACGTGCACCTACAAGTCCACCTTAGGCAA
TGTAAAGTCCCCAGAGAAGAAGCATCGTATGTTGTTCCCCTGCCTCTCGA
GGCTGCATCTTTTCATGATTATCGAACTGATGTCGCCCCCTACGCCCACC
ACCCACTACGTTCCTTCCTTCTTTGATCTTTTACCCCTCAGGCAGCTTAT
CGTGTATATCATGTGGTCTTATTGGCTGCCCTCTTCGGATTGTGGTGGCC
CTTCATTTTTATCTGGATGAGCTTGAGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1195:22037..24515+

>mRNA_H-canaliculatus_F_contig1195.1707.1 ID=mRNA_H-canaliculatus_F_contig1195.1707.1|Name=mRNA_H-canaliculatus_F_contig1195.1707.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=432bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1195:22037..24515+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACCCAGTTGGGATGGACCCAGTTGGGATATTTTACTTGTCAGGCGC
GGGCGCGTTTGGCGTGGGGTACGCCGTGATGGAACAGCGATATTTTACTT
GTCAGGCGCGGGCGCGTTTGGCGTGGGGTACGCCGTGATGGAACAGCGAA
GGGAGTCGACACGGCTGCAACAGGCACGGAACGTTGGAGCTGATGCTCAA
CGGAGGAGCAGAAGGGAGTCGACACGGCTGCAACAGGCACGGAACGTTGG
AGCTGATGCTCAACGGAGGAGCAGGCAGCTTATCGTGTATATCATGTGGT
CTTATTGGCTGCCCTCTTCGGATTGTGGTGGCCCTTCATTTTTATCTGGA
TGAGCAGCTTATCGTGTATATCATGTGGTCTTATTGGCTGCCCTCTTCGG
ATTGTGGTGGCCCTTCATTTTTATCTGGATGA
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