mRNA_H-canaliculatus_F_contig11947.1703.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_F_contig11947.1703.1
Unique Name	mRNA_H-canaliculatus_F_contig11947.1703.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)

Homology

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BLAST of mRNA_H-canaliculatus_F_contig11947.1703.1 vs. uniprot
Match: A0A6H5KV80_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV80_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.910e-20
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 1

Query:    1 QVLEFYSYVFKTAQLEKDCVIMSLVYIERVLTETAGKLRIFRKNWRYI 144
            +VLEFYSYVFKTAQLEKDCVIMSLVYIERVLTETAGKLRIF KNWR +
Sbjct:  278 EVLEFYSYVFKTAQLEKDCVIMSLVYIERVLTETAGKLRIFGKNWRSV 325

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BLAST of mRNA_H-canaliculatus_F_contig11947.1703.1 vs. uniprot
Match: A0A836C9Q1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Q1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.100e-12
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 1

Query:    1 QVLEFYSYVFKTAQLEKDCVIMSLVYIERVLTETAGKLRIFRKNWRYIT 147
            QV +F+SY+++TAQLE DCV+ SL YIER+L ETAG+LR+ R NWR IT
Sbjct:  266 QVHDFFSYIYRTAQLECDCVVTSLFYIERLLMETAGELRMCRTNWRSIT 314

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BLAST of mRNA_H-canaliculatus_F_contig11947.1703.1 vs. uniprot
Match: F0WJI3_9STRA (CyclinYlike protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJI3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.950e-9
Identity = 22/48 (45.83%), Postives = 36/48 (75.00%), Query Frame = 1

Query:    1 QVLEFYSYVFKTAQLEKDCVIMSLVYIERVLTETAGKLRIFRKNWRYI 144
            +++EF  ++F+  QLE DC+I+SL+Y ER+L  TAG +++   NWRY+
Sbjct:  331 EIIEFIKHIFRVGQLEADCIIISLIYTERLLETTAGSIQLHAGNWRYV 378

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BLAST of mRNA_H-canaliculatus_F_contig11947.1703.1 vs. uniprot
Match: A0A8J9SLA6_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SLA6_PHATR)

HSP 1 Score: 55.5 bits (132), Expect = 2.450e-8
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1

Query:   13 FYSYVFKTAQLEKDCVIMSLVYIERVLTETAGKLRIFRKNWRYI 144
            FY  VF  AQ+E DC+IMSL+Y+ER++  T GKLR  + NWR I
Sbjct:   67 FYRDVFTRAQMETDCIIMSLIYVERLVKVTDGKLRPHQSNWRSI 110

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BLAST of mRNA_H-canaliculatus_F_contig11947.1703.1 vs. uniprot
Match: A0A482UFY7_9ARCH (Cyclin N-terminal domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UFY7_9ARCH)

HSP 1 Score: 53.9 bits (128), Expect = 1.030e-7
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 1

Query:    4 VLEFYSYVFKTAQLEKDCVIMSLVYIERVLTETAGKLRIFRKNWRYI 144
            V +F++ VF  +QLE DC+IM+L+Y ER++ ET G+L I   NWR I
Sbjct:   62 VKDFFTLVFSKSQLESDCIIMALIYCERLVKETRGRLCIRYDNWRSI 108

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BLAST of mRNA_H-canaliculatus_F_contig11947.1703.1 vs. uniprot
Match: A0A024FT27_9STRA (WW domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FT27_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.580e-7
Identity = 21/48 (43.75%), Postives = 35/48 (72.92%), Query Frame = 1

Query:    1 QVLEFYSYVFKTAQLEKDCVIMSLVYIERVLTETAGKLRIFRKNWRYI 144
            ++ EF  ++F   Q+E DC+I+SL+Y E++L  T+G+L++   NWRYI
Sbjct:  355 EITEFIKHIFMVGQMEVDCIIISLIYTEKLLKVTSGRLQLHTGNWRYI 402

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BLAST of mRNA_H-canaliculatus_F_contig11947.1703.1 vs. uniprot
Match: B7G6C6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G6C6_PHATC)

HSP 1 Score: 55.5 bits (132), Expect = 1.590e-7
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1

Query:   13 FYSYVFKTAQLEKDCVIMSLVYIERVLTETAGKLRIFRKNWRYI 144
            FY  VF  AQ+E DC+IMSL+Y+ER++  T GKLR  + NWR I
Sbjct:  742 FYRDVFTRAQMETDCIIMSLIYVERLVKVTDGKLRPHQSNWRSI 785

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BLAST of mRNA_H-canaliculatus_F_contig11947.1703.1 vs. uniprot
Match: A0A7S3PW82_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW82_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.170e-7
Identity = 22/47 (46.81%), Postives = 34/47 (72.34%), Query Frame = 1

Query:    4 VLEFYSYVFKTAQLEKDCVIMSLVYIERVLTETAGKLRIFRKNWRYI 144
            +  FY +VF  AQ+E DC+I+SL+Y+ER++ ET G +R   +NWR +
Sbjct:  449 IASFYRFVFYKAQMESDCIIISLIYVERLMRETNGGVRPNARNWRSV 495

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BLAST of mRNA_H-canaliculatus_F_contig11947.1703.1 vs. uniprot
Match: A0A7S3DPP7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DPP7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 6.030e-7
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1

Query:    4 VLEFYSYVFKTAQLEKDCVIMSLVYIERVLTETAGKLRIFRKNWRYI 144
            +  FY  VF  AQ+E DCVIMSL+Y+ER++  T G LR    NWR +
Sbjct:   67 ITTFYRDVFGRAQMESDCVIMSLIYVERLIKNTRGNLRPRATNWRSV 113

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BLAST of mRNA_H-canaliculatus_F_contig11947.1703.1 vs. uniprot
Match: A0A7S4AWA7_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AWA7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.500e-7
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 1

Query:    1 QVLEFYSYVFKTAQLEKDCVIMSLVYIERVLTETAGKLRIFRKNWRYI 144
            +V  FY   F  AQ+E DC+IMSL+Y+ER++ +T G+LR    NWR +
Sbjct:  199 EVATFYRDTFFKAQMEADCIIMSLIYVERLIKQTIGRLRPRASNWRSL 246

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig11947.1703.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig11947.1703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KV80_9PHAE	3.910e-20	91.67	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836C9Q1_9STRA	1.100e-12	65.31	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
F0WJI3_9STRA	4.950e-9	45.83	CyclinYlike protein putative n=1 Tax=Albugo laibac...	[more]
A0A8J9SLA6_PHATR	2.450e-8	56.82	Hypothetical protein (Fragment) n=1 Tax=Phaeodacty...	[more]
A0A482UFY7_9ARCH	1.030e-7	51.06	Cyclin N-terminal domain-containing protein n=1 Ta...	[more]
A0A024FT27_9STRA	1.580e-7	43.75	WW domain-containing protein n=1 Tax=Albugo candid...	[more]
B7G6C6_PHATC	1.590e-7	56.82	Predicted protein n=2 Tax=Phaeodactylum tricornutu...	[more]
A0A7S3PW82_9STRA	2.170e-7	46.81	Hypothetical protein n=2 Tax=Chaetoceros debilis T...	[more]
A0A7S3DPP7_9STRA	6.030e-7	51.06	Hypothetical protein n=1 Tax=Amphiprora paludosa T...	[more]
A0A7S4AWA7_9STRA	7.500e-7	47.92	Hypothetical protein n=2 Tax=Pseudo-nitzschia aust...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig11947	contig	H-canaliculatus_F_contig11947:3437..3601 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	165
Cds size	165
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928898.5144818-CDS-H-canaliculatus_F_contig11947:3436..3601	1622928898.5144818-CDS-H-canaliculatus_F_contig11947:3436..3601	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig11947 3437..3601 +
1696845605.7704885-CDS-H-canaliculatus_F_contig11947:3436..3601	1696845605.7704885-CDS-H-canaliculatus_F_contig11947:3436..3601	Hapterophycus canaliculatus Oshoro5f female	CDS	H-canaliculatus_F_contig11947 3437..3601 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig11947.1703.1	prot_H-canaliculatus_F_contig11947.1703.1	Hapterophycus canaliculatus Oshoro5f female	polypeptide	H-canaliculatus_F_contig11947 3437..3601 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_F_contig11947:3437..3601+
coding sequence from alignment at H-canaliculatus_F_contig11947:3437..3601+

protein sequence of mRNA_H-canaliculatus_F_contig11947.1703.1

>prot_H-canaliculatus_F_contig11947.1703.1 ID=prot_H-canaliculatus_F_contig11947.1703.1|Name=mRNA_H-canaliculatus_F_contig11947.1703.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=55bp
QVLEFYSYVFKTAQLEKDCVIMSLVYIERVLTETAGKLRIFRKNWRYITE
ERDV*

mRNA from alignment at H-canaliculatus_F_contig11947:3437..3601+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_F_contig11947.1703.1 ID=mRNA_H-canaliculatus_F_contig11947.1703.1|Name=mRNA_H-canaliculatus_F_contig11947.1703.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=165bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11947:3437..3601+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGTTGGAGTTCTACTCGTATGTCTTCAAGACGGCTCAGCTGGAGAA
AGACTGTGTGATCATGTCCTTGGTGTACATCGAGAGGGTTCTGACGGAGA
CGGCCGGGAAGCTCAGAATCTTCCGAAAAAACTGGAGGTACATAACAGAG
GAAAGGGACGTGTGA

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11947:3437..3601+

>mRNA_H-canaliculatus_F_contig11947.1703.1 ID=mRNA_H-canaliculatus_F_contig11947.1703.1|Name=mRNA_H-canaliculatus_F_contig11947.1703.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=330bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11947:3437..3601+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGTTGGAGTTCTACTCGTATGTCTTCAAGACGGCTCAGCTGGAGAA
AGACTGTGTGATCATGTCCTTGGTGTACATCGAGAGGGTTCTGACGGAGA
CGGCCGGGAAGCTCAGAATCTTCCGAAAAAACTGGAGGTACATAACAGAG
GAAAGGGACGTGTGACAGGTGTTGGAGTTCTACTCGTATGTCTTCAAGAC
GGCTCAGCTGGAGAAAGACTGTGTGATCATGTCCTTGGTGTACATCGAGA
GGGTTCTGACGGAGACGGCCGGGAAGCTCAGAATCTTCCGAAAAAACTGG
AGGTACATAACAGAGGAAAGGGACGTGTGA