mRNA_H-canaliculatus_F_contig1193.1694.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1193.1694.1
Unique NamemRNA_H-canaliculatus_F_contig1193.1694.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1193.1694.1 vs. uniprot
Match: A0A6H5KV47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV47_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 1.610e-88
Identity = 139/218 (63.76%), Postives = 177/218 (81.19%), Query Frame = 1
Query:  295 SRTSAMSTEEDTGGGLVRPKDAAISCSHLWAYLLLVSGLAGFLMGAIIFSEWKGIGSFWVGAMAIAAGISGIYVTQAEAHGGIATGFYFFLSLVTFASSLASLILGEGAAFLVVNETDGNCFDGDDCPTDFCASEACVCWEPDGTEACAEAGSVRHCLRYGGDSCGDIGDSEGVLLGSSIVLLMVALFSLSSLLVAASTCFYCKRTIIVDSIENADAY 948
            SR + +S EED+G G+VRPK AAISCSHLWA  L+V GL+  ++G IIF+EWKG+GSFWVGA+A+AAG SGIYVTQ EA GG+AT FY  LSLVT A+S+ S+ LGEGA FL+V + +GNC DGDDCP+DFC  +ACVCWEPDGT+ C++AGSVR+C+ +GGDSC DI DSE +LLGS I+L+++A  S  SL+VA +TC+YCKRTI+V+S E +  Y
Sbjct:    5 SRQTEISPEEDSGAGMVRPKHAAISCSHLWANALVVVGLSSVVVGVIIFTEWKGMGSFWVGAVAMAAGTSGIYVTQGEASGGLATVFYALLSLVTLAASVVSIFLGEGATFLIVRDVNGNCRDGDDCPSDFCPEDACVCWEPDGTDVCSDAGSVRYCVPFGGDSCSDIKDSENLLLGSFIILVIIAFCSFWSLVVAVNTCWYCKRTIVVESSEESPGY 222          
BLAST of mRNA_H-canaliculatus_F_contig1193.1694.1 vs. uniprot
Match: D7G5U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U1_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 1.610e-39
Identity = 77/198 (38.89%), Postives = 118/198 (59.60%), Query Frame = 1
Query:  328 TGGGLVRPKDAAISCSHLWAYLLLVSGLAGFLMGAIIFSEWKGIGSFWVGAMAIAAGISGIYVTQAEAHGGIATGFYFFLSLVTFASSLASLILGEGAAFLVVNETDGNCFDGDDCPTDFCASEACVCWEPDGTEACAEAGSVRHCLRYGGDSCGDIGDSEGVLLGSSIVLLMVALFSLSSLLVAASTCFYCKRTIIV 921
            +G  L RP    +  SH+  ++L+ +G A  ++GA+IF++WK  G FWVG MA+AAG++G  V+  E  GG  T  +FF S +   ++  SL+L +G  +  V  T+GNC D   C  D C    CVCWEPDG+  C +  S R CL+Y G SC +I DSE +L  S+ + +++      ++LV ++TC  CK T+++
Sbjct:   32 SGISLTRPFPRIVKASHVLGWILVAAGSAEIVVGALIFNDWKYAGGFWVGFMALAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVQSTEGNCVDTSSCLDDICGGYDCVCWEPDGSTDCFDGTSTRTCLQYQGSSCDEIEDSESLLAASTFLHIIIMALVAIAMLVTSATCCGCKYTVLL 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1193.1694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV47_9PHAE1.610e-8863.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5U1_ECTSI1.610e-3938.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1193contigH-canaliculatus_F_contig1193:14841..22964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_009140.1
Exons6
Model size3030
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1193.1694.1prot_H-canaliculatus_F_contig1193.1694.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1193 16911..20185 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928897.3370967-UTR-H-canaliculatus_F_contig1193:14840..169101622928897.3370967-UTR-H-canaliculatus_F_contig1193:14840..16910Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1193 14841..16910 -
1696845605.2019498-UTR-H-canaliculatus_F_contig1193:14840..169101696845605.2019498-UTR-H-canaliculatus_F_contig1193:14840..16910Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1193 14841..16910 -
1622928897.6319513-UTR-H-canaliculatus_F_contig1193:20185..202131622928897.6319513-UTR-H-canaliculatus_F_contig1193:20185..20213Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1193 20186..20213 -
1696845605.2616165-UTR-H-canaliculatus_F_contig1193:20185..202131696845605.2616165-UTR-H-canaliculatus_F_contig1193:20185..20213Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1193 20186..20213 -
1622928897.6424634-UTR-H-canaliculatus_F_contig1193:22683..229641622928897.6424634-UTR-H-canaliculatus_F_contig1193:22683..22964Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1193 22684..22964 -
1696845605.271362-UTR-H-canaliculatus_F_contig1193:22683..229641696845605.271362-UTR-H-canaliculatus_F_contig1193:22683..22964Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1193 22684..22964 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928897.3510926-CDS-H-canaliculatus_F_contig1193:16910..170691622928897.3510926-CDS-H-canaliculatus_F_contig1193:16910..17069Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 16911..17069 -
1696845605.2119524-CDS-H-canaliculatus_F_contig1193:16910..170691696845605.2119524-CDS-H-canaliculatus_F_contig1193:16910..17069Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 16911..17069 -
1622928897.3620236-CDS-H-canaliculatus_F_contig1193:17360..174721622928897.3620236-CDS-H-canaliculatus_F_contig1193:17360..17472Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 17361..17472 -
1696845605.2218947-CDS-H-canaliculatus_F_contig1193:17360..174721696845605.2218947-CDS-H-canaliculatus_F_contig1193:17360..17472Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 17361..17472 -
1622928897.376793-CDS-H-canaliculatus_F_contig1193:18761..188281622928897.376793-CDS-H-canaliculatus_F_contig1193:18761..18828Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 18762..18828 -
1696845605.231391-CDS-H-canaliculatus_F_contig1193:18761..188281696845605.231391-CDS-H-canaliculatus_F_contig1193:18761..18828Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 18762..18828 -
1622928897.3918035-CDS-H-canaliculatus_F_contig1193:19370..195471622928897.3918035-CDS-H-canaliculatus_F_contig1193:19370..19547Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 19371..19547 -
1696845605.2409024-CDS-H-canaliculatus_F_contig1193:19370..195471696845605.2409024-CDS-H-canaliculatus_F_contig1193:19370..19547Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 19371..19547 -
1622928897.6205285-CDS-H-canaliculatus_F_contig1193:20049..201851622928897.6205285-CDS-H-canaliculatus_F_contig1193:20049..20185Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 20050..20185 -
1696845605.2514324-CDS-H-canaliculatus_F_contig1193:20049..201851696845605.2514324-CDS-H-canaliculatus_F_contig1193:20049..20185Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 20050..20185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1193.1694.1

>prot_H-canaliculatus_F_contig1193.1694.1 ID=prot_H-canaliculatus_F_contig1193.1694.1|Name=mRNA_H-canaliculatus_F_contig1193.1694.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=217bp
MSTEEDTGGGLVRPKDAAISCSHLWAYLLLVSGLAGFLMGAIIFSEWKGI
GSFWVGAMAIAAGISGIYVTQAEAHGGIATGFYFFLSLVTFASSLASLIL
GEGAAFLVVNETDGNCFDGDDCPTDFCASEACVCWEPDGTEACAEAGSVR
HCLRYGGDSCGDIGDSEGVLLGSSIVLLMVALFSLSSLLVAASTCFYCKR
TIIVDSIENADAYGRS*
back to top

mRNA from alignment at H-canaliculatus_F_contig1193:14841..22964-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1193.1694.1 ID=mRNA_H-canaliculatus_F_contig1193.1694.1|Name=mRNA_H-canaliculatus_F_contig1193.1694.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8124bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1193:14841..22964- (Hapterophycus canaliculatus Oshoro5f female)
GTGGCATTTGCAGAGCACAGAAGGTTTTGCCACTACTCTATCTGCAAGGA TTCCCTGTAAGAGAGTCGACCAGACCTTTAGCCCGCGACGACGTCGCTAA GACAGGTCACATTCCATCCACTGGACGGATTGAATCCTGTGCAGAAAAGC GACTCTCTCTGATCGTTTTCAACACAACAACGGCGGAAGACCCTCTCCTG GAGAGATTACCTGTTACGGAGTCGAGGCAGAGATCAGGAAGAGTGGCATA CCAGCAGCAACAGGAGATAAGCAAACGGCAGGCAAGGAACAGAGACCACG CGTCCGATGCAGTCTAGCGTGGCGGTTGGTTTCGCCAGCGAATATATACC CGGAGAAAACGGGGGGCTGGAGATGTGCCAAGAAATTACAACTTGTACTT CGGAATATTGCTGGACTTACCCTTTAAGAACGAGGCGCCGCATGCGGCGG TGTCTTCGTTGTCTGCGTGTTCCTTCAGGGAGGTGATACCCCAAGAAATA TAACTCACGGGTCAAAAGCAATTCGTGTCCCTTGTTTTTGTTTGACTTGC CATATTGCAATCATTGACTTGCATCCGAATCTCCTCGGCGATCAGCGTTC TTATTGCTGTACACATCTGAAATCACGATTCGTGAGCTCACGGACCCTGT CGAAAATAATCCGCACGGAGACCGTCCTTGTGGGGGAAGCATGTGAAAAC CAACCGACGAACAAACCCGGAGTGTTGAGTACCTCGTACTCCGGAGTGTA GTTCACTTTTCACCACAGACGTACACGCCCGGGTAGGTTCTGACAGCTTC TGGGAGCAAAGATTCAAGTTGCTTCGATCTTGGGACTACAATTCGCAGCA CGAATTAAATAGCCGAGAAGGTCAAGGAAGTTCATCGTTCAAGTAACTAC TCCGCACGATAACGTTCAAATGAGGGAAGGGCCAGCCGAACACTTGAGGA GGAAAGGTTGAACAGCATAATTAAGGATATTTGTGATACGATACTACCCT CGCCGACACGTCAAAGTCAAAGATGAGCTGAGGTGAGGACAGCCGCGAGA CCAGCGAGAATGGAAACACACACACACACACACACACACCCTAGCCCGGC TATGAAATGTTCTCTGGTGGACCACCATACTTGTATCCGTGGGTGTTGAC ATTTCGCTGCTGATTGCGTCCAATCGCTGGCTGGAAAGCCCTTGGGAACA GCCGCCTCGAGCACCGTGTGAGCAGAGCAGGTTTGGCCTAAAGTCAGCAT CTCACCCATCACGCGGGCCCTACATGACGTGATGCATTCTGCCGTAGCGC ATCTTCTGCTGATACTGCAGTATTAGTGGAAGTGCAGCCGTGCACATGCT AGTTTACATGCTACAGCAGTGCTATACTGGTAGTCAGTGACCTGTTTGCG CATCGGGCTATTTCGCTTGGCAGAACGAGTCTTGTGCGTGTCGAGTGCGT TTGACTTGTTCATTTGAGTCGGCTCGAAGAGGCGTTCGTTGTTCGAGCTG CCAATGTTCTTCTATGCGTTACTACTGTACCGGTATGCGGTTGTGTTCCA GCCAGCCGCAAGCGAGCGCGCACTTGTCACCCGTTATTCACACGTGGAAA AAGCCAGCCTGCTCGAGATTTTTTATGTTTGTGTGCACGTTTGGACGTTC GGGTGCTTGGGCGGTCTGCCATGTTCGTCGGGACGTTTTTCTCCCTTTTC TATTATTTCATTCTGTATTTGCCCCGAGATACACGCAAGCACGCACCTCG ATTCTACACAAAACTTTTGTCGGAAGTGGATGTGGCCCGGGAGACAAAAA AATATTTTACATCGGACAACTGCAGTGCCTGGACTTGTTTGGGTGTCAAA CTCACGTGCGAGATTCAGAAGTACGATTTCATTAGCCTACAATTGGGGAT GTAAACAGCAGTTTTGCCGGCGAGCGAGCCATCACCAGAGACAGGACATG TCATATGGGCATGTTGTTTCATGCACCACTGCCTCTATCTAAAGGGTCGC AAACGTGTTCGCGGACGGCCCAGGAGTACAAGTAGCGTAATCATAAAAAG CCTCCACAACCACGAGGACTCGAAGGGTTCGTACTTTAACATACATTCTG CATGTATATGTCAAACAAGGAGGGAATGGCCTCCAGGGTGGAGGAAAAAG CAAGACACCACAGATGAGAGAGAGGCATGGAGTTTTCCCCTTTGAGTGTT CTGTTTTTGCATAGCAGTGAGATTGAGGCTACCATACGTGCATGCACGTA TGGATGTGGCAGCTACAAGGGAGATCGTTGAACTGCGTTTCCTTTTTCGA CAACAACGCCGTTCCTGTTTGCTCACCGCTTTGGTACGAAGAAAGTCAGG AGCGAACAACACCAGAGCGCGATCAAAATGTGTGCAGTGAGGCGGCACAA GTGTCATAGAAGTGGTGGAGGTTGAAACGATGCAATGATGCTGAGGTGTG GCCGCCATGGAGGATTTGTCAGAGTAGAGACGAGAGTGGTTTTGGGTATG TGAATATGCGCAAGGGACAGCCAAGGGCTGGCGGCAGTGAGGCAGATGCC CGGGAATTGGACGGGAAATTTAGTTTTGCTACCCTCATTGCCGAAGCAGC AATTGAGTAGGCGAAACAACAAGTGTTGAGAAGGAGAGGTATTTTGTCGC GCGTCCACCCTGTACTATTGATAAGGGGCTATTATAACATACATAACATG CATGACAACATTGTTTGTTCTGCACTCGGGCATACTAACCCTTACCAACA GGAAACAAGACCCATCACGGACCTCGGCCATGAGCACAGAAGAGGACACG GGCGGAGGCTTGGTGAGGCCGAAGGATGCAGCTATCAGCTGCTCTCACTT GTGGGCATACTTGCTCCTCGTCAGTGGACTAGCCGGCTTTCTCATGGGAG CCATCATATTTAGCGGTGAGCTGGCACGTTTCAAGTATCCCAGGGATGAC GTCCAAGTATCCCAGGAATGAGAGTCGCTTTACACGCAAGCGGCCTAGCA GCCGCCCTCCACCCATGCCGTTTACAAGTGGCTGATTCACTAGTGCACCC TGCAGTCGGATTCGAGGAGTGGAATCATTGCATGCTCCAGTGGATTCTGC CTACTCCGAAAATGCTAAGGCGGAGAACGCTCATGAGAATGCCCATTAGA ATGCTCATTAGAATGCTCATCAAAATGTTCATTGTGGCCCAGCACCTGGT AAGTATCTAGCACAGCGGGCGGGCCGCTCATCAGCTGTAACGGCTGCGGC AGCCCTTCAAAGTGGCATGATGGAGCCATGTCAAAGATGTTCGTCGCCAA CGATGCCAACTGTTTCGGCGTTTCGGCCCCCTCCCGGGCATCGATCACTG GCTGTCTCACACACGCGCTCCCCTTGCCTCGGACTTGGACGTGGGCATCG CTTTCGATGAGGTCCAGAGTGGAAGGGCATTGGCTCTTTCTGGGTGGGAG CAATGGCCATCGCGGCGGGAATCTCCGGCATCTACGTCACACAAGCGGAG GCGCACGGAGGGATAGCCACGGGCTTCTATTTCTTCCTTTCGCTCGTCAC GTTCGCTTCCTCGCTGGCATCTCTCATCCTCGGCGAAGGCGCCGGTGAGC ACAAGAGGACCGTGAAACAGGAAGACCAGGGCGGGACGTCCAGTGCCGTG GTCACTATTAATAGTCGCAAGATGACGGATGGTAACTACATGTTGGTTCG GTGCAAGGTAGTGCTGACGTGTGAAATTTCGCATGAAATGTTTCCGTGGA TTTGTGCGAGTATGGGGGCGTACGGTGTTGTGAACGCCTTTTGGTCGGGA TCGACTCGTCTCGAACCCTACGACCCCTAAGGCGGCCACGAGGTGAGGAA AAGGCTGCTGTTGGTCCCCTTTTTTCCTTCGTGTAAAGGTGGTCGCCACT GTGTAGTAAGTGCCACGTAGGTGGACTTGCCTATCCAGGTGTTTGGGTGG ACGCTGAAGGCGTTGCGCCTCTTGAATATTTGGTTGTACTTATACTGCTG TCCCTGGTTGAAACAGATGGAAAAGACTCGGCCGCGACTTGCTTGTGCTA GACTCGCCCCTCTCGACCCCATCACCTGAAAAAAAACTGAAAAAAAAACG TGTGCGCTTGGCGTGATTGTTGAAAACTACGCGCAGCTTTCCTGGTGGTA AACGAGACTGATGGGAACTGTTTCGACGGCGATGACTGCCCCACGGATTT CTGGTGAGGGAAGGTAAAGGAGGAGGAAAATGCAAATCTGGGAACATTTT CTCCATGTTTCGTTTTACCTGGTGTATTTTACCTGCTTTAACGTGCGTGC TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG CTGCTGCTGCTGCTGCTGCTGCTGCTCCTGCTGCTCGAGATTATCAAGGT CTAGCCTGTCTATCCTTCTTGTGGACGACGGCGGGCACAAGATGCTTGCA TTCGCGCTCTTTAATTGATCGATTAAGCTCTTTCATCGCAACCCCAGCAA GAGCCCTTGCGGCTTCATTACACTTTAGTGTTGATACTTGAAGCGCTTCA GTTCGTGCTTGGGATGCTGTGCTTGGGATGACCAACCGCCAATACCAGTA CCAATACCAATACCAATACCAATACCAAAGCGCGACGCTCACCTTCTTGC GTTCTTGTGAACGACACGCTGCACACAACAGCACAAAAAAAATGAAGGCC GTGGCAATCAGGGCCATGGGGATTTTACGTACTTGCATTATACTTGTACT TGCACTGAATTCCCTTTCTTTGAGAATTCTGCACTGAATTCCCTTTCTCT GAGAATTCAATGCGATGTGGTTGGTGGAGACGAAAACATCGTTGGAAGCC GAAGATTGCGATAGATTCTCATCAGATGGAACTATGTGAAGGTCAGCACC AACAGTCCGGGAGAAAGCCGTGGGTTGTGTTGCTGTGCACGGAGCACGTT AAAAACAAACCTCGGCGTGAAGAACGGCCGGTGATCGGCTCTGAGGTTGA GGTCGTCTTCACAATGGGTCGTATCTTCATCTTCCCACAATCGAAGAGGC GAGCCTTCATGTGGCGGGCTGAAACATGCTTGGATCCGTTCATCGTAGTT GCTCGCGTGTTTTGCCCAGTTGTGGGGGCTTACGTATGAGACAACAAGGG TTACCTTGATCTAATCAGAAAGAGCACGCCCCACTACGAGCTTGACCTGG GATGGCTACAAGCCCTACGAGCTGAATCGACCATCCCTTTCCTTCTTCGT CTTGGCATCTTTTTCGTCGAGAAAATCTTGTGTTGATGGTTGTCGATCGA GAGGCCCGTCGAAGAAAGGACAACGACGCCCGTCTTGCTCCCCATTCCTC CTGCTCAAACACTTGTAGAGCACAGCATCATCGCACGAAACAAACCGAAT ATGGTCGTGTTCGCTGTTTTCCTCTCTTTCCCCTCTTTTCCCCCTTTTCC CTTTTCCCTTGTATCCCAACCCCGCGTTCAAAATGCGGGTAGTGCCTCAG AGGCGTGCGTGTGTTGGGAGCCTGACGGGACTGAAGCATGCGCAGAGGCG GGCTCCGTGCGACATTGCCTTCGGTATGGAGGAGACAGTTGCGGCGACAT AGGGGTGAGTGTGGAAGTGGGGGTGGACTCAAGGGCGCTGATTTGTGCGG GGTGCAAAGCGGCATTAGTGTCGGCCCTCCAAACTACGGCACCAAACTGA TGCGATTCGCATGACTTTCCCGTCAAAATTTTGAGTGCCGCCGGCATAGG TGTTCGCCGGAAGATGCCATCTGTACGCCAAAACTTCTTTGCGAGTATGC CATCGTTTTTGTGGTCGGGCATGCAACTCCGTCCGCTGTTGACCTGTCGC CTCGGGGTGTAAACTTTGCTCAACGTGGCGCGCTTACTTGCACAGGACTC GGAAGGCGTGCTTTTGGGGTCATCGATTGTTCTGCTGATGGTGGCCTTGT TCTCCTTGTCCTCCTTGTTGGTTGCGGCCAGCACGTGTTTCTACTGCAAG CGCACTATCATCGTCGACTCGATCGAGAATGCGGATGCCTACGGGCGGTC GTGATCGTATCGCAGTCAACCTCATGGGGACCCGTAGAGTGGATTTTTGC AGCCAGCTTTGTCATGAAAAGAGAGAGTCCCTTACCTTGGAAGAGACGGA ACGCCAAAAACGAAATCGTACAAGTACAAGTGTAAGTGCAAGTGCAAGTG CAAGCACAAAAGTACAAGTACTTATTTCATGCGCGTGGTTTGGGTCAGCA TTTGCCATGCCGTCTCGTCGAGAGATTTCCACATTACGGTTTTCAAAGGT TCACAGGTGGCGGTGAGTTTTTGCACGCGCTACACAAAATGACGTTCAGG ACATCCAGCGATGCCGTCCGAAGCTTTCGAAGGATCATGTGACTCGTTGC CCTGCCCATCGTTTGGCATTGGTACATGAAGCCTTGGCGCTATATGAAGG GTTCTACTCGATGGCAGATAAAACTAAAGTCGCCCCCTGATTGTGCCTGG TCTAGACGTACAAGTACGTAGCGAGTCTTTCGCGCGTTTTTTGCAGCACG GGTTGGCTGAGAATGTGGCAGCATGCGGTTCAAACAGTGCGCGTTGGATT GGTAAAACACTGCGGTTTCTCTTTTTACGCACAATAGCAGCGCTGCCTTT TGTTAGGGCGTCGGATCTCTGTAGAAGTGGCCTTTGGGAACCAACTACGA GTATTGGTTCATACGGAGTACTAATCTGCTTCACAGCGGTTTCATCTTAA ACCTTCGCTGCATCCATGTATATTGGTGATCGATTTTGTGCCCTCATTAA GCTGTGTCCATAGCGACGTGTACAATTAGGATCCCGGGTGGGTTGCCGGT CTCATTAAGTGCCAATCTGTGGAGTTTCGGAGAACAAATTTAGTATGTTG TGCTTTATGAAGACATGGTACACGGTTCTTGTTGGTTGACGCGGAGGAAT GTATCATCAAACGACCAGTGCTTTGGCATGACCCCTCAGAACGCTGGAGA ATGTTCAATGGTGCTAGGGTTGGCTCTATCCCTCCGATCCTTCAGTCGCG CAAGTTGCAGCCCGTCTTGTCTTGGAATCCACAGATCGGTGAGGCTTTTG GCGTCGGAGCAACAACAAGTTGCTGCATGTCGCCGCGAAGCCAGGGTAAG GGATACTCTCGAGAAGGGCAGAAAGCCGTCGACTCGCTTTCGTACGTACT CCTTCAGCAGGATGTGCCCGCTTCTGTGCTCTCGTTTGCAACCGCGCAAA AAGCTTTGGCTTCCCTCGTTACAAGACCCTTCGTTCGATAGGTGAGGGGG TGGGGGGGGGGTGGTCACCAGACAAGATGTTTGAGACGCCCATGCAGAAG GCAGCTTTTGGAGGAAGTGCGCCGTGCGTCTTTCGTGTTGGGTTTGATGT TCACGCGCTCTGCTCTGAAAGCTGCGAAATTGGCCCAAGATAATTGAGGT TGCGGGGCAAACTGTTGTCAAAGTACGGTCTTGATGTATTCTTGTCTTGC ATTCCCTGGTTTGTGAAGAGCGGCTTGTTTTCTGTTTGTGGATACTAATA TCCTGCTAAATAGTGTTGATAACCCATTTCTTGTTTTGATATTTTTGTCT ATTTCTCGTTTGTTGAAAAGCGCCAGCGCACGAACGAAGTGCAGCGCGTG TGCAGTGCAGTGTTGTCATCACCCCCACCGGGTAAGGTAAGAATTTGGGA TGTAAAGGCCAAAGTCATGTGCGCGGCCTCTTGAAAACAGCCCATCTGCT GCTGTGTCAAGGAAGCCTAAAACAAGTACGGGTGAACTGATAGATTCTCT CATGTTCATACTTTTGGGTGCTTGATTGGGGTTCCTCGAAGCCTACAAGT AGATTTGCAATTGTGTCTACATTAGTCTACTCCGTATGCATTTCGGGTGC AGGAGGCGTTGCAGGGGGTCGTTGACACACTTGGTCGGACTCGGGCCCAG TAAAGCACCAACACTTGCAGAAGCGTGCGAGACAGCAGGAAGAGCCAAGT CACTGAATACAGCCGCGAAGCGCAACCGGGCCACTCTCTTCCACTCACTA CGGCAGGCCTTCTTGAAATGGGTGCCGATCTTTTTGATATTACAGTATAA ATGAACGTGGTACTCCAACCGCAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1193:14841..22964-

>mRNA_H-canaliculatus_F_contig1193.1694.1 ID=mRNA_H-canaliculatus_F_contig1193.1694.1|Name=mRNA_H-canaliculatus_F_contig1193.1694.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1302bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1193:14841..22964- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCACAGAAGAGGACACGGGCGGAGGCTTGGTGAGGCCGAAGGATGC
AGCTATCAGCTGCTCTCACTTGTGGGCATACTTGCTCCTCGTCAGTGGAC
TAGCCGGCTTTCTCATGGGAGCCATCATATTTAGCGATGAGCACAGAAGA
GGACACGGGCGGAGGCTTGGTGAGGCCGAAGGATGCAGCTATCAGCTGCT
CTCACTTGTGGGCATACTTGCTCCTCGTCAGTGGACTAGCCGGCTTTCTC
ATGGGAGCCATCATATTTAGCGAGTGGAAGGGCATTGGCTCTTTCTGGGT
GGGAGCAATGGCCATCGCGGCGGGAATCTCCGGCATCTACGTCACACAAG
CGGAGGCGCACGGAGGGATAGCCACGGGCTTCTATTTCTTCCTTTCGCTC
GTCACGTTCGCTTCCTCGCTGGCATCTCTCATCCTCGGCGAAGGCGCCGA
GTGGAAGGGCATTGGCTCTTTCTGGGTGGGAGCAATGGCCATCGCGGCGG
GAATCTCCGGCATCTACGTCACACAAGCGGAGGCGCACGGAGGGATAGCC
ACGGGCTTCTATTTCTTCCTTTCGCTCGTCACGTTCGCTTCCTCGCTGGC
ATCTCTCATCCTCGGCGAAGGCGCCGCTTTCCTGGTGGTAAACGAGACTG
ATGGGAACTGTTTCGACGGCGATGACTGCCCCACGGATTTCTGCTTTCCT
GGTGGTAAACGAGACTGATGGGAACTGTTTCGACGGCGATGACTGCCCCA
CGGATTTCTGTGCCTCAGAGGCGTGCGTGTGTTGGGAGCCTGACGGGACT
GAAGCATGCGCAGAGGCGGGCTCCGTGCGACATTGCCTTCGGTATGGAGG
AGACAGTTGCGGCGACATAGGGTGCCTCAGAGGCGTGCGTGTGTTGGGAG
CCTGACGGGACTGAAGCATGCGCAGAGGCGGGCTCCGTGCGACATTGCCT
TCGGTATGGAGGAGACAGTTGCGGCGACATAGGGGACTCGGAAGGCGTGC
TTTTGGGGTCATCGATTGTTCTGCTGATGGTGGCCTTGTTCTCCTTGTCC
TCCTTGTTGGTTGCGGCCAGCACGTGTTTCTACTGCAAGCGCACTATCAT
CGTCGACTCGATCGAGAATGCGGATGCCTACGGGCGGTCGTGAGACTCGG
AAGGCGTGCTTTTGGGGTCATCGATTGTTCTGCTGATGGTGGCCTTGTTC
TCCTTGTCCTCCTTGTTGGTTGCGGCCAGCACGTGTTTCTACTGCAAGCG
CACTATCATCGTCGACTCGATCGAGAATGCGGATGCCTACGGGCGGTCGT
GA
back to top