mRNA_H-canaliculatus_F_contig1193.1692.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1193.1692.1
Unique NamemRNA_H-canaliculatus_F_contig1193.1692.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1193.1692.1 vs. uniprot
Match: D7G5U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U1_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 7.760e-108
Identity = 161/221 (72.85%), Postives = 184/221 (83.26%), Query Frame = 3 
Query:  438 PVEVNEEARRRSGIALTRPFPRVVKASHALGWMLLAVGLAEVVVGSLIFKDWRVVGGFWVGVMAMVAGVAGTCVTITEHSGGFPTALFFLQSAMCLVAASLSLVLLDGLAYDKVQSTNGNCFEVSSCLENICGGYDCVCWEPDDSMECSEGTSVRKCLQYQGGDCDEVEDFESLLGTSVLLHVATIALTLVAMIVASATFCCCKYTVLLRKEDGVTRVHRL 1100
            PVE +EE RR SGI+LTRPFPR+VKASH LGW+L+A G AE+VVG+LIF DW+  GGFWVG MA+ AGVAGTCV+ITEHSGGFPTA FF QSAMCLVAA+LSLVL+DGL Y KVQST GNC + SSCL++ICGGYDCVCWEPD S +C +GTS R CLQYQG  CDE+ED ESLL  S  LH+  +AL  +AM+V SAT C CKYTVLLR+EDGVTRVHRL
Sbjct:   21 PVEDDEEERRMSGISLTRPFPRIVKASHVLGWILVAAGSAEIVVGALIFNDWKYAGGFWVGFMALAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVQSTEGNCVDTSSCLDDICGGYDCVCWEPDGSTDCFDGTSTRTCLQYQGSSCDEIEDSESLLAASTFLHIIIMALVAIAMLVTSATCCGCKYTVLLRREDGVTRVHRL 241
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1193.1692.1 vs. uniprot
Match: A0A6H5KT21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT21_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 2.060e-51
Identity = 83/107 (77.57%), Postives = 92/107 (85.98%), Query Frame = 3 
Query:  624 MAMVAGVAGTCVTITEHSGGFPTALFFLQSAMCLVAASLSLVLLDGLAYDKVQSTNGNCFEVSSCLENICGGYDCVCWEPDDSMECSEGTSVRKCLQYQGGDCDEVE 944
            MA  AGVAGTCV+ITEHSGGFPTA FF QSAMCLVAA+LSLVL+DGL Y KV ST GNC E SSCL++ICGGYDCVCWEPD S +C +GTS RKCLQYQGG CD++E
Sbjct:    1 MAFAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVHSTEGNCVETSSCLDDICGGYDCVCWEPDGSTDCFDGTSTRKCLQYQGGSCDDIE 107
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1193.1692.1 vs. uniprot
Match: A0A6H5KV47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV47_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 4.820e-35
Identity = 75/202 (37.13%), Postives = 113/202 (55.94%), Query Frame = 3 
Query:  471 SGIALTRPFPRVVKASHALGWMLLAVGLAEVVVGSLIFKDWRVVGGFWVGVMAMVAGVAGTCVTITEHSGGFPTALFFLQSAMCLVAASLSLVLLDGLAYDKVQSTNGNCFEVSSCLENICGGYDCVCWEPDDSMECSEGTSVRKCLQYQGGDCDEVEDFESLLGTSVLLHVATIALTLVAMIVASATFCCCKYTVLLRKED 1076
            SG  + RP    +  SH     L+ VGL+ VVVG +IF +W+ +G FWVG +AM AG +G  VT  E SGG  T  + L S + L A+ +S+ L +G  +  V+  NGNC +   C  + C    CVCWEPD +  CS+  SVR C+ + G  C +++D E+LL  S ++ V     +  +++VA  T   CK T+++   +
Sbjct:   16 SGAGMVRPKHAAISCSHLWANALVVVGLSSVVVGVIIFTEWKGMGSFWVGAVAMAAGTSGIYVTQGEASGGLATVFYALLSLVTLAASVVSIFLGEGATFLIVRDVNGNCRDGDDCPSDFCPEDACVCWEPDGTDVCSDAGSVRYCVPFGGDSCSDIKDSENLLLGSFIILVIIAFCSFWSLVVAVNTCWYCKRTIVVESSE 217
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1193.1692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G5U1_ECTSI7.760e-10872.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT21_9PHAE2.060e-5177.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV47_9PHAE4.820e-3537.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1193contigH-canaliculatus_F_contig1193:7010..13334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_009130.1
Exons5
Model size3095
Cds size570
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928897.2019079-UTR-H-canaliculatus_F_contig1193:7009..90011622928897.2019079-UTR-H-canaliculatus_F_contig1193:7009..9001Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1193 7010..9001 -
1696845605.1238182-UTR-H-canaliculatus_F_contig1193:7009..90011696845605.1238182-UTR-H-canaliculatus_F_contig1193:7009..9001Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1193 7010..9001 -
1622928897.2932959-UTR-H-canaliculatus_F_contig1193:12801..133341622928897.2932959-UTR-H-canaliculatus_F_contig1193:12801..13334Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1193 12802..13334 -
1696845605.1911588-UTR-H-canaliculatus_F_contig1193:12801..133341696845605.1911588-UTR-H-canaliculatus_F_contig1193:12801..13334Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1193 12802..13334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928897.219252-CDS-H-canaliculatus_F_contig1193:9001..91601622928897.219252-CDS-H-canaliculatus_F_contig1193:9001..9160Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 9002..9160 -
1696845605.141235-CDS-H-canaliculatus_F_contig1193:9001..91601696845605.141235-CDS-H-canaliculatus_F_contig1193:9001..9160Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 9002..9160 -
1622928897.2324736-CDS-H-canaliculatus_F_contig1193:9728..98401622928897.2324736-CDS-H-canaliculatus_F_contig1193:9728..9840Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 9729..9840 -
1696845605.1530683-CDS-H-canaliculatus_F_contig1193:9728..98401696845605.1530683-CDS-H-canaliculatus_F_contig1193:9728..9840Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 9729..9840 -
1622928897.247246-CDS-H-canaliculatus_F_contig1193:10743..108101622928897.247246-CDS-H-canaliculatus_F_contig1193:10743..10810Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 10744..10810 -
1696845605.161634-CDS-H-canaliculatus_F_contig1193:10743..108101696845605.161634-CDS-H-canaliculatus_F_contig1193:10743..10810Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 10744..10810 -
1622928897.2617142-CDS-H-canaliculatus_F_contig1193:11717..118941622928897.2617142-CDS-H-canaliculatus_F_contig1193:11717..11894Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 11718..11894 -
1696845605.170509-CDS-H-canaliculatus_F_contig1193:11717..118941696845605.170509-CDS-H-canaliculatus_F_contig1193:11717..11894Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 11718..11894 -
1622928897.2773912-CDS-H-canaliculatus_F_contig1193:12746..128011622928897.2773912-CDS-H-canaliculatus_F_contig1193:12746..12801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 12747..12801 -
1696845605.1803641-CDS-H-canaliculatus_F_contig1193:12746..128011696845605.1803641-CDS-H-canaliculatus_F_contig1193:12746..12801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1193 12747..12801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1193.1692.1prot_H-canaliculatus_F_contig1193.1692.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1193 9002..12801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1193.1692.1

>prot_H-canaliculatus_F_contig1193.1692.1 ID=prot_H-canaliculatus_F_contig1193.1692.1|Name=mRNA_H-canaliculatus_F_contig1193.1692.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=190bp
MLLAVGLAEVVVGSLIFKDWRVVGGFWVGVMAMVAGVAGTCVTITEHSGG
FPTALFFLQSAMCLVAASLSLVLLDGLAYDKVQSTNGNCFEVSSCLENIC
GGYDCVCWEPDDSMECSEGTSVRKCLQYQGGDCDEVEDFESLLGTSVLLH
VATIALTLVAMIVASATFCCCKYTVLLRKEDGVTRVHRL*
back to top

mRNA from alignment at H-canaliculatus_F_contig1193:7010..13334-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1193.1692.1 ID=mRNA_H-canaliculatus_F_contig1193.1692.1|Name=mRNA_H-canaliculatus_F_contig1193.1692.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6325bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1193:7010..13334- (Hapterophycus canaliculatus Oshoro5f female)
ACCTCAGCAATTGATCCATCGGGTGCCCCTTCACAGCAACAAGTACACAG
AGATCCCGAGGCGGGCTTCATTGCTTTGCAGTGCAACCGAAATTTCTCCA
AGTCTGAAGCATTGTTGTATGTCAGCAGCAATGTTTACGATTAAAAAAAT
GAGGACAGAATCAGATAGATGCTCAGAAACGCTCACGCCCGCAGACGACA
CGCACCTTTCACTGTCCAAGCGATGCGTTTTCCTTGCTGGCGCGCTCTCT
TCACTCCTCTAGGTGAATCATCGACACATCCAGCGTAACTAGCTTGCATC
CATCTGCCGATTGCTGTGCTGGTCCCGCCGCAATACCCCGGTAAACGTCA
AACGTCGCCCTTGCAATGCATTCACTCTCAAACGAACCCACAATAACACT
TCCATATCCACAACAACACTTCTGTGTTCGCATGTAGCCAGTGGAAGTCA
ACGAAGAGGCGAGGAGGAGAAGCGGGATCGCGTTGACCAGACCGTTTCCG
AGGGTCGTGAAGGCGTCGCATGCTCTGGGGTGGATGCTTCTGGCGGTGGG
GCTAGCGGAGGTCGTGGTCGGCTCGCTCATCTTCAAAGGTGCAGTGAGAA
TGGGGGAAGACGTACATACGGCACCGGCTCAGAGGGTGTGCTCTTCAGCG
CACATCGTTAGACTAGGAAGCGAAAGAGAAAATGACGTCCACGCGCTCAT
CATGCATCATCTCGAAAAGCATTCACCGTTATACCGTAATAATATACTCC
GGAGTATACCGTTTCAGGGTCGATCGGCGTTGGACACTCGTTTTCTCGGA
AGGCCTGAACATGCGTGGCGTAAGACCTGTCTCAGATGCGGCGAGGTCGA
GCTTTAAACCGAGCGCTAGTCTGACAGTCTGACGCTGGTTTGATGTCGCC
GACAGCAAAAAGTTTCGCGGGCGAATTTGGCGAGGTCCCGTCACAGGGGA
ACATCTGCGTCTTCGAATTTACCTTCACGAAGTCATCTACAATTAGCCAC
TTCAATTTAAGTCGAAAAATCTTCAGGGGAAGGGTTAAGGATAGATTGTG
ACCACACCCCATGAGGATCTTGTGAACTCGTTTTGTGCGCCGTTTCGCTA
CATCCTTGGTTGTACTGCTGTTGCTTTGGCCCGCGCGCACCGCAGCCCCA
ACTATGGCCATCACGAGGGATGGATGATGTCATGAATGATGTCACGAATG
CCAGGCACCTCAAAGAGTCTTTCAGATCCGCGTTCTTAGGATTGCCACTC
ACGAGGAGCGAGGGCCAGCCCTCCTGCTTAAAGTTTCTAGCTTTAGAGTG
CACAGGCAACTTCGTCCGGCGAGAAGCCTTGGCCTTCGAACATCGCCCCC
CACTCGCTCCGTCGCCGTTCATCAATCAATGGCAATTGCCTCCTCCGCCT
TATCGGTCCCGTGTATCGATCTCGTGTGCCCTACGTGCAGACTGGCGCGT
CGTCGGCGGGTTCTGGGTGGGGGTGATGGCGATGGTGGCGGGGGTAGCGG
GGACGTGTGTGACCATCACGGAACACTCGGGCGGCTTTCCGACAGCGCTG
TTTTTCCTTCAGTCGGCCATGTGTCTGGTAGCGGCTTCGCTCTCGCTGGT
CCTTTTGGACGGCTTAGGTGAGCAGCGACGGCCAACAAACGTAAAAAAAG
GGTACTCGTGCTCATGTGCTGTAGTGGCGTAGTCGCGCATGTGCACGATA
CAGGTGTGACTCCGTACTTGGAGTGAGCCAGGCAGGAGGTTCTTTCACTG
GGGAAATACAAGTATATGGGTTAAGGTTAGGTTAGGATGTCGTTACGTAT
TGGGCGTTCCTGACTTTAGTGCCAGCAAGAAAACGAGCGCTCCGATTGTT
TCTTCCTAGAGCATCCAAAGTGATCTCGTGTACGCACTCTTCTTTCGCCG
CCAAGATTCATTTCACATACAGTTCCGGCCCGCCAATCAGAAACGCAAAA
AAAAGAAAGGCAGGTTAGACGAAAAACGGGGCCCCGTTGCGAGTGTCACA
TTAAAACTACTAATATGTAACTGCTTTAAGAAACCCAACCTCGGTCGGAA
TTCCAGTTTCGTAATAGCGGACCGGTACTCGTACTGCTCTGCTCTGTACA
GTATTGTACAACGCGAAGAGGCTTGAGGTCATGTGTTGGTATCCGTATGG
TCGTGACACGACAGCAGTGCGAGTGATGAGAGTGTTTCCGCATATATCTT
TCCTACTGTGAAGGCATTGGATCTCACGGGATCTCGCGGCGTTGAGTGTA
AAAATGTCCTACGAGGTTGAACGTCGTCGTCCAGTGCCACCCGCAGCTGT
TGTTTCTCTGTTGATTGTGGTGCACACATATTCTGCATGCAGTACCACGA
GGGGATGGATTACAAGCTACTTCGTATGCTCCTGCTATTGGTCTTGCGTA
GTAAGGGATAACCTGTACGCAAACCGTCGTCCTCAGCACCATCGTGAAGC
GGGGTTTGCTTCGACCTCATATTTTGCCTTGCGCTGCTGTTTTGATATTG
CCTACTTGTATTTTGTGCCATCAGCGTACGACAAGGTGCAATCTACGAAT
GGGAACTGCTTCGAAGTGTCGTCGTGCCTTGAAAACATTTGGTGAGACCG
AGTTGGGACACATCTATCATCTAGATGATGGACATCATGGACGACCCTGC
CCACTGCTCTTGGTATTTTGAAAGCGTGGTGCGCTACACTTGCTGTCTCT
CATTGTGAGGTTGATCACCCCATCTATCGCGTCCACTGTGGCGATGGGCG
AGATACGTTTCGAGGAGGTAGCCGGTTTGCACAACCTCTGCGCCAAACCG
GACGAACTAGCGTACGTAGTCTTTGTGGTCGAGCAATGACCTAGCGAAGC
TCGCATTGGCGATTTCGGCGCCGAACAGAAATTTGCCCAGGCTTAATGAT
CGATGTTGTCAGGATCACTGTTGTTTACTTTGTGTTGTGTTGCCGTGCTT
CGACCCTGACCCGACCTCGTCAATCCAGACTACCATGTGAGCGCTTGAGC
TGTGCCCCTTAAGGTTAAGGTTTGAAGTAGTCGTAAGGTCTGGGCGTTAT
GTGCGAGGGGTCCGGAATGTCTCAGCATACTGCACATCATTCTACACGTC
AAATCCATCTCATGAAAGGGTGGTGGGATAGGTGAAGCGGGGCAGGACGA
GATGGAGATATCACACACAGATCGGTCGTCCATACGACAGCATGAGAGGG
GGGCGGTAGGAGAACGAAAAGTCAAGGTAGGGTCAAGGCTTTCTACTTTT
CGCATCTCCCGACCCGTCTACTTGTAGTCTAGCGAGCGCCACAGGGTAAG
CTTCAACTCCGCCTACCCTACGCAACAGCATCTTGCCGTGTGCTGAGTCA
TGTCTTCACGCTGAAGTGACTTCCATGTTTCCCTGGTGTCTGCTCGACTT
GCGCGCGACGCTCATTTCGCCTCTCGTGGGGTTTCGTTGGATGATGTGGC
ATGTGTACACACGTGATACACACATCATGTCTCGTCACTAACAGCGGTGG
GTACGACTGCGTGTGCTGGGAGCCAGACGATTCGATGGAATGCTCCGAGG
GGACGTCTGTGCGCAAATGCTTGCAATACCAGGGCGGAGATTGCGACGAA
GTCGAGGTGAGGCGAATGCTGCCGCTTGAGCAGCTCAATGCTTCAGGTTT
TTACCCTGTCCGAAAGTGCATGTCATTCGCCGCCTCGTTGCTTGTCCGTG
CGACTGCCCGATACGGCTGAGTGGCAAGAGGGCTCGATGAGGAACGTTTT
TTGGCCGAACAACGTGACATGCGACTTGCGTAGTGCCGCTTGGTGCAGGG
AGAAACTGAGTCGACGAAGTCTTCATGCTTCGAGGGTGGGTTGTTCGCAG
CAAGATACTTTCGAGAGTAATCGCGCAGGTTGAGATGCAGCCCGGAGTGA
GAGTGTACAAAGCGTTCTGCTTCTTTTCCGGAACACTTCCTTGAGTGTTG
TGAATGCTGTCCCGTGTACCTCACACTGGCGATAGAGCAAGCCGTAACGA
ATCGTGCACCATGAAAAGTGAACAAGGAGCTTATTCTTTTATGTTCTTTC
GATGTGCGGCCGACCAGAAACCAGCACCATACTTGAACCCACAACACGCT
GTCTTCCGTTAGTCCCTTTTTCGCGAGCTCGCAATTTTGTTATAACACCT
CGGTGCCCATGATGCTTTTGGCAGGACTTCGAATCTCTCTTGGGCACGTC
CGTGTTGCTCCACGTCGCAACCATTGCCCTTACACTTGTGGCGATGATCG
TAGCGTCGGCGACGTTCTGCTGCTGCAAGTACACCGTTCTCCTGAGGAAA
GAAGACGGCGTTACCCGTGTACATCGGTTGTGATGATTTCGCGATCGCGT
TGCGGCTTGATCGCGGCAACATTCGCTGGGCGGAAATGACACGCCTGCCT
CTGGTGCTCGAAAGCACGCACAAGTTTCCCTAAAGGAGGGGTAAAGAGCT
TCACCCTAGTGCACCGATTTTGATTTGTTTGTGTCGGTGATTTGTGTGTT
GGATGTGTTGGGGTGTTTGTGGTGTAGCTTCGCGTCAAGGTATCTGTTGA
TGTTGCCGCGCAAGGGTGGATCGCTTCGGGTAGGCTGGAAGACGAAAGTT
GTTCTCACCGAACGATGGTAGTTGCGGTTGAAATGGATTGTATTTGCGGT
TGAAATGGATTGTCACGATCATGCCTCGTCACTGCTAGAAACGCGCACAC
AGTCTTGCGTGAAGTGCAAACCAGCAAAACGGTTACAGGACCCGACTTAC
CGCTCGGGACATTCACCAAGAGCGCGAACGGTAAACGTGTCCATTTTCAT
GCATGAGCAAGCTCAGTCTGAAGACGTCGATTAAACCCAGAAGGCTCATA
AGGTTTAGTGATGGCCGTTGACCGTGCGTTTGCGCGATTTCGTATGGGGG
AGGTAAGGGGGGCGGGGGGGGCGGTACGAGCTGGCGTACTGCGTACCTCG
GTTGTTCAACCTTGACCAAGTATCTTGGCATACACTTGGTCGAGTTAGTC
GATGCATTCAATACATTTTTCCCCGCCGGCGGTGAGCGGTAGCTCAGATC
GTGCCTTGAGCACATCGCAGTAGGTGAGATCGGTTTATCGTTCGTTAACA
ACAATGTGTTCAGTTTGTGCGCGAAAAAGTGCTGCTGCTGTGTGTAGGTG
TGTTGGGTGTTGTACGTAAAGAAAGATGGAGAGGTGCTGGATGTGCGGCG
GCGGATGGACCATTGTCCATCGGTGAGCAACTGCAGTAGCGTGGGTACCA
GCATCTACAGTAGGGTGGTTTGATCTTGCAGGTCTGAACAGCACTTTCCA
GTTTCTTTTTTTGCTCTTTGCTCGCAGTGTCGGCTTCGTGAAAATGTTGG
AATAGGGACAGGTGCCTTCCCTGACGTCGAAAAGGACATCCACGCGAGAA
AGCGGAAAGCTGATAGGGGAAGGGCCCGGGACCAGCATGACGACATTGGT
TTTCGTAATGTTTTGACGTCTGTTGGCCTTGCATCGGAGATTGAAATACG
GGTAGGGGTGGTCAGGGTGCCTCGTGGGAGACGTATGTGCACATGTATGA
TTTGTCGCTAATCGGTAGAGCAAGCAAAAACAATCCAAGTGTACGTATTT
ATATTTTGCATATTCCAGCCAACGTCGCTCCGCCGCGCAGAGTGTTGCGT
AGGTCGTCACACCTTGCTTTGTTTAAACTTTGCGCGGTGGTCGGCTTGAA
CGTGTAGATAAGGGCTTCCGTTGCTGGGTAATTGGGAAGGCGGGTAAGGC
GGTGTCCGTGTACAGGAAAAACCCGGGAGTCGCAATAGGGAGAAGGGGAA
ACCGCTTGCTCTCGTCAGAAAGAGCACTTTTAGTGCATCGACAAGGAACG
TGCCTCATAAGAGGTCCTTCGCTGATGGAGCTTCAAGGCAAGCAGGCGTT
TCGTGCGAATGGCATCCTTTTTCAGGTTTCGATGGCTTTTCTTGTTGGGA
CGTGCACAAAGTACGCTTGCACGCCCTTTTGTTACCCGAGAGAACGCGAT
GTGTTATTGGGCGTGCCACACCGTCATGTCTTCGGTTGACATCAACGGTG
GTCCTCGCGTTGCCAGTGTATCCTCCGTCACCGGATTTACCGAATAGAGC
GCCCCAGAATATGCGACAATGAGCGTGGTGGGGGAGATAGGTGAAAAGCG
TTTCATGATTCCAAATTCCAACAAGATATCCATCAACTTGTTGTACGTGG
GATGTGATGGTATTGCCTGCAACACCAAGGTTGGATTTTAGTCATGAGGA
GCTTGTCAGCACGGAGTGATGCCTCTCAAGGGGTGGGCGTGGGGGGGGGC
ATGTGACCGCCGCGAAGAAAACCTC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1193:7010..13334-

>mRNA_H-canaliculatus_F_contig1193.1692.1 ID=mRNA_H-canaliculatus_F_contig1193.1692.1|Name=mRNA_H-canaliculatus_F_contig1193.1692.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1140bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1193:7010..13334- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTCTGGCGGTGGGGCTAGCGGAGGTCGTGGTCGGCTCGCTCATCTT
CAAAGATGCTTCTGGCGGTGGGGCTAGCGGAGGTCGTGGTCGGCTCGCTC
ATCTTCAAAGACTGGCGCGTCGTCGGCGGGTTCTGGGTGGGGGTGATGGC
GATGGTGGCGGGGGTAGCGGGGACGTGTGTGACCATCACGGAACACTCGG
GCGGCTTTCCGACAGCGCTGTTTTTCCTTCAGTCGGCCATGTGTCTGGTA
GCGGCTTCGCTCTCGCTGGTCCTTTTGGACGGCTTAGACTGGCGCGTCGT
CGGCGGGTTCTGGGTGGGGGTGATGGCGATGGTGGCGGGGGTAGCGGGGA
CGTGTGTGACCATCACGGAACACTCGGGCGGCTTTCCGACAGCGCTGTTT
TTCCTTCAGTCGGCCATGTGTCTGGTAGCGGCTTCGCTCTCGCTGGTCCT
TTTGGACGGCTTAGCGTACGACAAGGTGCAATCTACGAATGGGAACTGCT
TCGAAGTGTCGTCGTGCCTTGAAAACATTTGCGTACGACAAGGTGCAATC
TACGAATGGGAACTGCTTCGAAGTGTCGTCGTGCCTTGAAAACATTTGCG
GTGGGTACGACTGCGTGTGCTGGGAGCCAGACGATTCGATGGAATGCTCC
GAGGGGACGTCTGTGCGCAAATGCTTGCAATACCAGGGCGGAGATTGCGA
CGAAGTCGAGCGGTGGGTACGACTGCGTGTGCTGGGAGCCAGACGATTCG
ATGGAATGCTCCGAGGGGACGTCTGTGCGCAAATGCTTGCAATACCAGGG
CGGAGATTGCGACGAAGTCGAGGACTTCGAATCTCTCTTGGGCACGTCCG
TGTTGCTCCACGTCGCAACCATTGCCCTTACACTTGTGGCGATGATCGTA
GCGTCGGCGACGTTCTGCTGCTGCAAGTACACCGTTCTCCTGAGGAAAGA
AGACGGCGTTACCCGTGTACATCGGTTGTGAGACTTCGAATCTCTCTTGG
GCACGTCCGTGTTGCTCCACGTCGCAACCATTGCCCTTACACTTGTGGCG
ATGATCGTAGCGTCGGCGACGTTCTGCTGCTGCAAGTACACCGTTCTCCT
GAGGAAAGAAGACGGCGTTACCCGTGTACATCGGTTGTGA
back to top