mRNA_H-canaliculatus_F_contig1193.1691.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1193.1691.1 vs. uniprot
Match: A0A835Z8S7_9STRA (Integral membrane protein DUF92-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S7_9STRA) HSP 1 Score: 309 bits (791), Expect = 1.540e-96 Identity = 162/230 (70.43%), Postives = 184/230 (80.00%), Query Frame = 2
Query: 353 ALVVNTVGFGLLEATGKRGSILTASGACSAYILGLLLWATLGGWGWGTCVLYLAAGSAVTKLKMAEKESLGIAEGRGGARGPENVWGSAATGAMCAVASLFWPQWAGPLRIGYVASLATKLSDTFASEIGKAYGKRTFLITTLKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVATKALPACLIAAFVATNFESFLGATTQGKLPWLTNEVINFVNTVVGAAVGV 1042
AL +N+VGFGL +GK +LT GA AY+LG +LW LG GW TCVLYL AGSAVTK+KMAEK + GIAEGRGG RGPENVWGSAATGA CA+A + WPQ A LR+GY ASLATKL DTFASEIGKAYG+ T+LITTL+PVPAGTEGAVSLEGT AGV GS+II+ +AAA G++ A+ C +AAFVA N ES LGATTQGK WLTNEVINFVNT VGAAVG+
Sbjct: 3 ALTINSVGFGLFIGSGKAEKLLTPQGAAHAYVLGNILWYALGWRGWTTCVLYLLAGSAVTKVKMAEKTARGIAEGRGGRRGPENVWGSAATGAACALACVVWPQRAALLRVGYAASLATKLGDTFASEIGKAYGRTTYLITTLRPVPAGTEGAVSLEGTAAGVGGSLIIAWYAAAIGLMPASAIGVCAVAAFVACNVESVLGATTQGKTAWLTNEVINFVNTTVGAAVGM 232
BLAST of mRNA_H-canaliculatus_F_contig1193.1691.1 vs. uniprot
Match: D7G5U0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U0_ECTSI) HSP 1 Score: 281 bits (720), Expect = 4.160e-87 Identity = 154/184 (83.70%), Postives = 158/184 (85.87%), Query Frame = 2
Query: 515 AGSAVTKLKMAEKESLGIAEGRGGARGPENVWGSAATGAMCAVASLFWPQWAGPLRIGYVASLATKLSDTFASEIGKAYGKRTFLITTLKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVATKALPACLIAAFVATNFESFLGATTQGKLPWLTNEVINFVNTVVGAAVGVGXXLAWGV 1066
AGSAVTKLKM +KESLGIAEGRGGARGPENVWGSAAT GPLRIGYVASLATKLSDTFASE+GKAYGK TFLITT KPVP GTEGAVSLEGTLAGVVGSVIISGFAA AGVV KALPACLIAAFVATNFES LGATTQGK+PWLTNEV+NFVNTVVGAAVGVG LA GV
Sbjct: 2 AGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAAT---------------GPLRIGYVASLATKLSDTFASEVGKAYGKHTFLITTFKPVPPGTEGAVSLEGTLAGVVGSVIISGFAATAGVVTAKALPACLIAAFVATNFESVLGATTQGKVPWLTNEVVNFVNTVVGAAVGVGLGLACGV 170
BLAST of mRNA_H-canaliculatus_F_contig1193.1691.1 vs. uniprot
Match: A0A7S2GNY6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GNY6_9STRA) HSP 1 Score: 285 bits (729), Expect = 1.110e-86 Identity = 154/255 (60.39%), Postives = 195/255 (76.47%), Query Frame = 2
Query: 281 KGKRILAQASSLPLLQGLPPQVQAALVVNTVGFGLL-EATGKRGSILTASGACSAYILGLLLWATLGGWGWGTCVLYLAAGSAVTKLKMAEKESLGIAEGRGGARGPENVWGSAATGAMCAVASLFWPQWAGPLRIGYVASLATKLSDTFASEIGKAYGKRTFLITTLKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVATKALPACLIAAFVATNFESFLGATTQGKLPWLTNEVINFVNTVVGAAVGV 1042
K K + ++A +LP+ L + A+ +NT G ++ ATG++ +LT SG A+ LG++LW+ LG GW CV YL GS VTK+K+ EK LGIAEGRGG+RGPENVWGSAATGA+CA A L WPQ+ L++GYV+S+ATKLSDTFASEIGKAYGKR FLITTLKPVP GTEGAVSLEGTLAGVVGS+II+ + AA G+V+ +++ +IAAFVAT ES +GAT QGK LTNEV+NF+NT++GA VG+
Sbjct: 29 KAKLVPSRALNLPVADLLLSEPGKAVALNT-GLAIMGSATGQK--MLTPSGLLHAWALGIILWSALGWQGWSLCVFYLVMGSVVTKVKIEEKSKLGIAEGRGGSRGPENVWGSAATGALCAAAMLKWPQYRSLLQVGYVSSIATKLSDTFASEIGKAYGKRCFLITTLKPVPRGTEGAVSLEGTLAGVVGSLIIAIYGAAVGLVSWQSITVTMIAAFVATTAESLIGATAQGKFKILTNEVVNFINTLIGAFVGI 280
BLAST of mRNA_H-canaliculatus_F_contig1193.1691.1 vs. uniprot
Match: L1JQB2_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQB2_GUITC) HSP 1 Score: 280 bits (716), Expect = 2.220e-85 Identity = 149/230 (64.78%), Postives = 181/230 (78.70%), Query Frame = 2
Query: 353 ALVVNTVGFGLLEATGKRGSILTASGACSAYILGLLLWATLGGWGWGTCVLYLAAGSAVTKLKMAEKESLGIAEGRGGARGPENVWGSAATGAMCAVASLFWPQWAGPLRIGYVASLATKLSDTFASEIGKAYGKRTFLITTLKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVATKALPACLIAAFVATNFESFLGATTQGKLPWLTNEVINFVNTVVGAAVGV 1042
+LV+N+V LL ATGK S LT+SG SA++LG++LW +LG GW TCV+YL AGS VTK+KMAEKE GIAE RGGARGPENVWGSAAT A CA+ + + Q G RIG+VASLATKLSDTFASE+GKAYGK+TFLIT++KPVPAGTEGAVS+EGTLAGVVGS++I+ +A V+ +P +IAAFVAT ES +GAT Q K WLTNE +N +NT +GAAVG+
Sbjct: 11 SLVLNSVLALLLLATGKYRSFLTSSGLLSAWLLGVILWGSLGFAGWSTCVVYLIAGSLVTKVKMAEKEKKGIAESRGGARGPENVWGSAATAAFCAMMATYSLQDTGLFRIGFVASLATKLSDTFASELGKAYGKKTFLITSMKPVPAGTEGAVSVEGTLAGVVGSLVIAVWAVMTNVMLASEIPVVMIAAFVATTCESVIGATVQDKYKWLTNEAVNAINTSIGAAVGI 240
BLAST of mRNA_H-canaliculatus_F_contig1193.1691.1 vs. uniprot
Match: A0A7S4FD08_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FD08_CHRCT) HSP 1 Score: 282 bits (722), Expect = 6.950e-85 Identity = 149/255 (58.43%), Postives = 190/255 (74.51%), Query Frame = 2
Query: 293 ILAQASSLPLLQ-GLPPQVQAA----LVVNTVGFGLLEATGKRGSILTASGACSAYILGLLLWATLGGWGWGTCVLYLAAGSAVTKLKMAEKESLGIAEGRGGARGPENVWGSAATGAMCAVASLFWPQWAGPLRIGYVASLATKLSDTFASEIGKAYGKRTFLITTLKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVATKALPACLIAAFVATNFESFLGATTQGKLPWLTNEVINFVNTVVGAAVGV 1042
+ A+ + P+L PP + A +V+N+ + A G+R +LT SG SA++LG+ LW+TLG GW TCV YL GSAVTKLKMAEKE+ GIAE RGGARGPENVWGSAAT A+CA+ +++ P PL +GY ASLATKL+DT ASE+GKAYGK T+LITTLKPVP GTEGAVSLEG AGVVGS++++ FA A G+ AL C+IAAF+A N ES +GA+ QG++PW+TNEV+NF+NT+VGA V +
Sbjct: 86 VHARRAPQPVLSFAAPPSIATAAVQAIVLNSGLAAIGTALGQR--VLTPSGLVSAWVLGVTLWSTLGWQGWATCVFYLVCGSAVTKLKMAEKEAKGIAESRGGARGPENVWGSAATAALCAIGTVYMPLATTPLLVGYTASLATKLADTSASEVGKAYGKSTYLITTLKPVPPGTEGAVSLEGLAAGVVGSIVLAAFAIAIGLNHASALVPCIIAAFIANNVESLIGASVQGRIPWMTNEVVNFINTLVGAVVAI 338
BLAST of mRNA_H-canaliculatus_F_contig1193.1691.1 vs. uniprot
Match: A0A7S3ALU7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ALU7_9EUKA) HSP 1 Score: 273 bits (699), Expect = 1.810e-82 Identity = 151/246 (61.38%), Postives = 185/246 (75.20%), Query Frame = 2
Query: 332 LPPQVQAALVVNTVGFGLLEATGKRGSILTASGACSAYILGLLLWATLGGWGWGTCVLYLAAGSAVTKLKMAEKESLGIAEGRGGARGPENVWGSAATGAMCAVASLFWPQWAGPLRIGYVASLATKLSDTFASEIGKAYGKRTFLITTLKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVAT--KALPA---CLIAAFVATNFESFLGATTQGKLPWLTNEVINFVNTVVGAAVGVGXXL 1054
L P+V A+ +N+ + A G++ +LT SG A+ LG++LW +LG GW TCVLYL GS VTK++M EKE+LGIAEGRGG RGPENVWGSAAT A CA+AS WP A RIG+VASLATKLSDT ASEIGKA+G+ T+LITT K VPAGTEGAVSLEGT+AGVVGS++++ + A G++ +ALPA C++AAFVATN ES +GA Q K WLTNEV+NFV TVVGAAVG+G L
Sbjct: 31 LSPRVLTAVGLNSGLAAVGVAKGQK--VLTPSGLAHAWALGVMLWGSLGVVGWSTCVLYLVCGSRVTKVRMVEKEALGIAEGRGGMRGPENVWGSAATAAACALASAAWPSRAAVFRIGFVASLATKLSDTCASEIGKAFGQTTYLITTFKLVPAGTEGAVSLEGTVAGVVGSIVLTAYGALVGLLGGQGRALPAAVACVLAAFVATNVESVIGAVAQDKFAWLTNEVVNFVMTVVGAAVGIGFAL 274
BLAST of mRNA_H-canaliculatus_F_contig1193.1691.1 vs. uniprot
Match: W7U4P9_9STRA (Integral membrane protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4P9_9STRA) HSP 1 Score: 268 bits (686), Expect = 1.730e-79 Identity = 152/248 (61.29%), Postives = 178/248 (71.77%), Query Frame = 2
Query: 332 LPPQVQAALVVNTVGFGLLEATGKRGSI-----LTASGACSAYILGLLLWATLGGWGWGTCVLYLAAGSAVTKLKMAEKESLGIAEGRGGARGPENVWGSAATGAMCAVASLFWPQWAGPLRIGYVASLATKLSDTFASEIGKAYGKRTFLITTLKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVATKALPACLIAAFVATNFESFLGATTQG-KLPWLTNEVINFVNTVVGAAVGVGXXLA 1057
L P++ A GFGL A G LT+SG A+ILG+ LW+TLG GW CVLYL GS VTK+K +EKE+LGIAE RGGARGPENVWGSAA G +CA A++F P L GYVASLATKLSDTFASEIGKAYGKRTFLIT LKPVP GTEGA+SLEGTLAGVVGS+II+ VA KA+P L+AAF+ATN ES LGA+ Q + PW TNE INF+NT++G+ +G+G LA
Sbjct: 100 LIPELGAYSANFLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIALAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGIGMVLA 347
BLAST of mRNA_H-canaliculatus_F_contig1193.1691.1 vs. uniprot
Match: A0A7S0QBY2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBY2_9EUKA) HSP 1 Score: 263 bits (673), Expect = 1.580e-78 Identity = 139/236 (58.90%), Postives = 175/236 (74.15%), Query Frame = 2
Query: 335 PPQVQAALVVNTVGFGLLEATGKRGSILTASGACSAYILGLLLWATLGGWGWGTCVLYLAAGSAVTKLKMAEKESLGIAEGRGGARGPENVWGSAATGAMCAVASLFWPQWAGPLRIGYVASLATKLSDTFASEIGKAYGKRTFLITTLKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVATKALPACLIAAFVATNFESFLGATTQGKLPWLTNEVINFVNTVVGAAVGV 1042
P AL +N+ + G+R +LT SG ++ LG++LW LG GW TCVLYL GSAVTKL+ A+KE+LGIAEGRGGARGPENVWGSAAT A+CA+ SL+ P A R+G+VASLATKL+DT ASE+GKAYGK T+LITTL+ VP GTEGAVSLEGTLAG+ GS++++G+ G+V AL C++AAF+A N ES +GAT Q + WLTNEV+NF+NT VGA V +
Sbjct: 46 PAAATQALALNSGLAVMGTLAGQR--MLTPSGLAHSWGLGVILWTALGVRGWSTCVLYLVCGSAVTKLRKAKKEALGIAEGRGGARGPENVWGSAATAALCAIGSLYAPSLAAIFRMGFVASLATKLADTCASEVGKAYGKTTYLITTLRKVPPGTEGAVSLEGTLAGIAGSIVLAGYGIGVGLVPLGALLPCVLAAFIANNVESLIGATAQDNVWWLTNEVVNFINTTVGALVAM 279
BLAST of mRNA_H-canaliculatus_F_contig1193.1691.1 vs. uniprot
Match: A0A7S2RSZ3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSZ3_9STRA) HSP 1 Score: 261 bits (667), Expect = 3.620e-77 Identity = 141/243 (58.02%), Postives = 181/243 (74.49%), Query Frame = 2
Query: 317 PLLQGLPPQVQAALVVNTVGFGLLEATGKRGSILTASGACSAYILGLLLWATLGGWGWGTCVLYLAAGSAVTKLKMAEKESLGIAEGRGGARGPENVWGSAATGAMCAVASLFWPQWAGPLRIGYVASLATKLSDTFASEIGKAYGKRTFLITTLKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVATKALPACLIAAFVATNFESFLGATTQGKLPWLTNEVINFVNTVVGAAVGVG 1045
PL+ L P V A+ +N+ GL AT R S+LT SG A+ LG++LW++LG GW CVLYL AGS VTK++M EK+ LGI+EGRGG RGPENVWGSAATGA+CA+A+L WP+ L++ YV+S+ATKL+DTF SE+GKA+GKR FLITTLKPVP GTEGA+S+EGTLAGVVGS++I+ + A ++ + AAF AT ES +GAT QG+ LTNEV+NF+NT++GAAV G
Sbjct: 71 PLVPVLGP-VPTAVGLNSALAGLGVAT--RQSMLTPSGLLHAWALGVILWSSLGWQGWSLCVLYLLAGSKVTKIRMKEKQDLGISEGRGGRRGPENVWGSAATGALCAIAALRWPEARPLLQVAYVSSIATKLADTFQSEVGKAFGKRCFLITTLKPVPRGTEGAISVEGTLAGVVGSLLIAAYGAGVNLMPWSCVWVVAAAAFFATMAESLIGATAQGRFKLLTNEVVNFINTLIGAAVAAG 310
BLAST of mRNA_H-canaliculatus_F_contig1193.1691.1 vs. uniprot
Match: A0A6H2NLM8_9CYAN (TIGR00297 family protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A6H2NLM8_9CYAN) HSP 1 Score: 250 bits (638), Expect = 8.240e-74 Identity = 141/257 (54.86%), Postives = 178/257 (69.26%), Query Frame = 2
Query: 314 LPLLQGLPPQVQAALVVNTVGFGLLEATGKRGSILTASGACSAYILGLLLWATLGGWGWGTCVLYLAAGSAVTKLKMAEKESLGIAEGRGGARGPENVWGSAATGAMCAVASLFWPQWAGP--------LRIGYVASLATKLSDTFASEIGKAYGKRTFLITTLKPVPAGTEGAVSLEGTLAGVVGSVIISGFAAAAGVVATKALPACLIAAFVATNFESFLGATTQGKLPWLTNEVINFVNTVVGAAVGVGXXLAW 1060
LPL P ++ +V+NT GL K+ +LT +G A+ LG+LLW LG G+ ++Y GSAVTK+ MA K++ GIAEGR G RGPENVWGSA GA+CA+A W GP L +GYVASL+TKLSDT ASE+GKAYG+RTFL+TTLKPVPAGTEGAVSLEGTLAGV+GSV+I+ G++A +P CL+AA +AT+ ES +GAT QG+ PWLTNEV+N +NT +GA V +G L W
Sbjct: 2 LPLDSVWLPWIEG-VVINTGLLGLAWLAPKK--LLTPAGYWHAWGLGVLLWGCLGWPGYALMMIYFLVGSAVTKVGMARKQAAGIAEGRSGMRGPENVWGSALAGALCALAVGGLNTWGGPGQALWIMALGLGYVASLSTKLSDTTASEVGKAYGRRTFLMTTLKPVPAGTEGAVSLEGTLAGVLGSVVIAIAGWGVGLIAVWGIPICLVAALIATSAESVIGATVQGQWPWLTNEVVNIINTTLGALVAMGLGLVW 255 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1193.1691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1193.1691.1 >prot_H-canaliculatus_F_contig1193.1691.1 ID=prot_H-canaliculatus_F_contig1193.1691.1|Name=mRNA_H-canaliculatus_F_contig1193.1691.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=342bp MRTLFMTGVLASLACPGNCLVHLSPLLAVKTATTHVSASAIRGAPSRERVback to top mRNA from alignment at H-canaliculatus_F_contig1193:882..7087+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1193.1691.1 ID=mRNA_H-canaliculatus_F_contig1193.1691.1|Name=mRNA_H-canaliculatus_F_contig1193.1691.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6206bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1193:882..7087+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1193:882..7087+ >mRNA_H-canaliculatus_F_contig1193.1691.1 ID=mRNA_H-canaliculatus_F_contig1193.1691.1|Name=mRNA_H-canaliculatus_F_contig1193.1691.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2052bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1193:882..7087+ (Hapterophycus canaliculatus Oshoro5f female)back to top |