mRNA_H-canaliculatus_F_contig11924.1686.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11924.1686.1
Unique NamemRNA_H-canaliculatus_F_contig11924.1686.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11924.1686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11924contigH-canaliculatus_F_contig11924:180..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size443
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11924.1686.1prot_H-canaliculatus_F_contig11924.1686.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11924 196..564 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928895.7373676-UTR-H-canaliculatus_F_contig11924:179..1951622928895.7373676-UTR-H-canaliculatus_F_contig11924:179..195Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11924 180..195 +
1696845604.7613945-UTR-H-canaliculatus_F_contig11924:179..1951696845604.7613945-UTR-H-canaliculatus_F_contig11924:179..195Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11924 180..195 +
1622928895.7831357-UTR-H-canaliculatus_F_contig11924:564..6221622928895.7831357-UTR-H-canaliculatus_F_contig11924:564..622Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11924 565..622 +
1696845604.7870998-UTR-H-canaliculatus_F_contig11924:564..6221696845604.7870998-UTR-H-canaliculatus_F_contig11924:564..622Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11924 565..622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928895.768911-CDS-H-canaliculatus_F_contig11924:195..5641622928895.768911-CDS-H-canaliculatus_F_contig11924:195..564Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11924 196..564 +
1696845604.7748022-CDS-H-canaliculatus_F_contig11924:195..5641696845604.7748022-CDS-H-canaliculatus_F_contig11924:195..564Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11924 196..564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11924.1686.1

>prot_H-canaliculatus_F_contig11924.1686.1 ID=prot_H-canaliculatus_F_contig11924.1686.1|Name=mRNA_H-canaliculatus_F_contig11924.1686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=123bp
MPFRSGPRYACCEQPGRSLNRLFMSNVLMSGPVGTASSSSSCFPVVACPH
AFSRLGRCAFSCWCISRSFRSWLERNVSETGKCLHAGQRHVSRLFFGQLP
SREKGFCGTQLSDWKCLSCGTH*
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mRNA from alignment at H-canaliculatus_F_contig11924:180..622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11924.1686.1 ID=mRNA_H-canaliculatus_F_contig11924.1686.1|Name=mRNA_H-canaliculatus_F_contig11924.1686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=443bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11924:180..622+ (Hapterophycus canaliculatus Oshoro5f female)
GGAGGGGAGAAGCGGCATGCCGTTTCGAAGCGGCCCTCGCTATGCGTGCT
GTGAACAACCTGGACGGTCTTTAAACCGCCTCTTCATGTCGAACGTGCTG
ATGAGCGGACCCGTCGGTACGGCATCGTCTTCTTCATCGTGTTTTCCCGT
GGTGGCATGCCCCCATGCCTTCAGCCGGCTCGGTAGATGCGCTTTCAGCT
GTTGGTGCATTTCGAGAAGCTTTCGGAGCTGGTTAGAGCGCAATGTCAGT
GAAACTGGTAAATGTCTTCACGCAGGGCAACGACATGTTTCACGTCTGTT
CTTTGGCCAGCTGCCTAGTAGAGAGAAAGGGTTCTGTGGCACGCAGTTGT
CTGATTGGAAATGTTTATCATGTGGCACCCATTGAAAAACACCTGGTACA
ACAAGGGTACAAAGTTTGAATAGTGCAAACAAGCGAAACAATC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11924:180..622+

>mRNA_H-canaliculatus_F_contig11924.1686.1 ID=mRNA_H-canaliculatus_F_contig11924.1686.1|Name=mRNA_H-canaliculatus_F_contig11924.1686.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=738bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11924:180..622+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCGTTTCGAAGCGGCCCTCGCTATGCGTGCTGTGAACAACCTGGACG
GTCTTTAAACCGCCTCTTCATGTCGAACGTGCTGATGAGCGGACCCGTCG
GTACGGCATCGTCTTCTTCATCGTGTTTTCCCGTGGTGGCATGCCCCCAT
GCCTTCAGCCGGCTCGGTAGATGCGCTTTCAGCTGTTGGTGCATTTCGAG
AAGCTTTCGGAGCTGGTTAGAGCGCAATGTCAGTGAAACTGGTAAATGTC
TTCACGCAGGGCAACGACATGTTTCACGTCTGTTCTTTGGCCAGCTGCCT
AGTAGAGAGAAAGGGTTCTGTGGCACGCAGTTGTCTGATTGGAAATGTTT
ATCATGTGGCACCCATTGAATGCCGTTTCGAAGCGGCCCTCGCTATGCGT
GCTGTGAACAACCTGGACGGTCTTTAAACCGCCTCTTCATGTCGAACGTG
CTGATGAGCGGACCCGTCGGTACGGCATCGTCTTCTTCATCGTGTTTTCC
CGTGGTGGCATGCCCCCATGCCTTCAGCCGGCTCGGTAGATGCGCTTTCA
GCTGTTGGTGCATTTCGAGAAGCTTTCGGAGCTGGTTAGAGCGCAATGTC
AGTGAAACTGGTAAATGTCTTCACGCAGGGCAACGACATGTTTCACGTCT
GTTCTTTGGCCAGCTGCCTAGTAGAGAGAAAGGGTTCTGTGGCACGCAGT
TGTCTGATTGGAAATGTTTATCATGTGGCACCCATTGA
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