mRNA_H-canaliculatus_F_contig11914.1677.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11914.1677.1
Unique NamemRNA_H-canaliculatus_F_contig11914.1677.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11914.1677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11914contigH-canaliculatus_F_contig11914:1156..1821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size170
Cds size144
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11914.1677.1prot_H-canaliculatus_F_contig11914.1677.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11914 1181..1821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.796549-UTR-H-canaliculatus_F_contig11914:1155..11801622928894.796549-UTR-H-canaliculatus_F_contig11914:1155..1180Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11914 1156..1180 -
1696845604.3431747-UTR-H-canaliculatus_F_contig11914:1155..11801696845604.3431747-UTR-H-canaliculatus_F_contig11914:1155..1180Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11914 1156..1180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.8118398-CDS-H-canaliculatus_F_contig11914:1180..12401622928894.8118398-CDS-H-canaliculatus_F_contig11914:1180..1240Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11914 1181..1240 -
1696845604.3556926-CDS-H-canaliculatus_F_contig11914:1180..12401696845604.3556926-CDS-H-canaliculatus_F_contig11914:1180..1240Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11914 1181..1240 -
1622928894.828802-CDS-H-canaliculatus_F_contig11914:1737..18211622928894.828802-CDS-H-canaliculatus_F_contig11914:1737..1821Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11914 1738..1821 -
1696845604.3672528-CDS-H-canaliculatus_F_contig11914:1737..18211696845604.3672528-CDS-H-canaliculatus_F_contig11914:1737..1821Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11914 1738..1821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11914.1677.1

>prot_H-canaliculatus_F_contig11914.1677.1 ID=prot_H-canaliculatus_F_contig11914.1677.1|Name=mRNA_H-canaliculatus_F_contig11914.1677.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=48bp
ASAADPEAERIRLAGLRADRSEALFLEQVPPRNALFYGSFWNTSKSV*
back to top

mRNA from alignment at H-canaliculatus_F_contig11914:1156..1821-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11914.1677.1 ID=mRNA_H-canaliculatus_F_contig11914.1677.1|Name=mRNA_H-canaliculatus_F_contig11914.1677.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11914:1156..1821- (Hapterophycus canaliculatus Oshoro5f female)
GCTAGTGCTGCTGATCCAGAGGCCGAGCGCATTCGTTTAGCTGGCCTTCG
TGCTGATCGCTCGGAAGCGCTCTTTTTAGAGCAGGTGAGAGGTATTGATT
ATTTGGCTACAGACCGTGTCAGCAAAATGCCCGCTTCTTCCCACATTGTT
GGGTCTAGTGCAGCGTCGCTTTCTGGCGGTTCTTCTGCCTTGGATCCTTT
GGCTTCAGCGCCCCCTGTACATGCTTCTGCATCTTCGCCTTTGGAGCCTT
CTGTAGTTACCACTGCGGTCTCTGCGCCCACATCGCACTCCTCTGATCTG
CGCCATTTTCGTGTTGGAGACATTCCTTCTTGTGTGGATTCGCGCAAACA
CTGATGACCTGCTGTATAAACCAGTAGTCCGCTTTCAAAGTCCACGATTG
CTGGCCGTGACGTACAGCAGTCTCACCAGCGAGAGTCTCGGGCCGCCTGC
TCGCGCTGCTTTGCCTTCGCCTCGTCCACGTACCCTGCCAAATTGCACGA
TCCGAAAAATGTGCGTTGTCTGCTCCGCCGCCCGCCTTCCGTCTGCCCCC
TTCGTTTTTTTCGCGAGTAAAAACGACACAGGTGCCACCAAGAAACGCTC
TCTTTTATGGAAGCTTCTGGAATACGTCAAAATCAGTGTAGAGTTGATTC
GTGCAGTGATTCGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11914:1156..1821-

>mRNA_H-canaliculatus_F_contig11914.1677.1 ID=mRNA_H-canaliculatus_F_contig11914.1677.1|Name=mRNA_H-canaliculatus_F_contig11914.1677.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11914:1156..1821- (Hapterophycus canaliculatus Oshoro5f female)
GCTAGTGCTGCTGATCCAGAGGCCGAGCGCATTCGTTTAGCTGGCCTTCG
TGCTGATCGCTCGGAAGCGCTCTTTTTAGAGCAGGCTAGTGCTGCTGATC
CAGAGGCCGAGCGCATTCGTTTAGCTGGCCTTCGTGCTGATCGCTCGGAA
GCGCTCTTTTTAGAGCAGGTGCCACCAAGAAACGCTCTCTTTTATGGAAG
CTTCTGGAATACGTCAAAATCAGTGTAGGTGCCACCAAGAAACGCTCTCT
TTTATGGAAGCTTCTGGAATACGTCAAAATCAGTGTAG
back to top