mRNA_H-canaliculatus_F_contig1190.1670.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1190.1670.1 vs. uniprot
Match: A0A6H5KL96_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL96_9PHAE) HSP 1 Score: 314 bits (805), Expect = 1.800e-101 Identity = 164/190 (86.32%), Postives = 177/190 (93.16%), Query Frame = 1
Query: 1 MYGMKIGCAALAFVSKASGFVPAALGRNSLGT-GSVQSVSSTALRMVSVGQAAPDFKLNDQNGKPVSLSSFKNKKKVVVFFYPKDSTPGCTKEACTFQSDLSKFKQAGAEVIGVSSDADHSSFVAENNLSMTLLSDIGGKVRKEWKVKGAVFGTIDGRVTYVLDKKGVVVSMYDNLLDGAAHSKEALKAV 567
M+GMK CAALAFV +A+GFVPAALGR++L T GS Q VSSTALRMVSVGQAAPDFKLN+QNGKPV+LSSFKNKKKVVVFFYPKDSTPGCTKEA TFQSDL+KFK+AGAEVIG+SSDADH+ FV ENNLSMTLLSDIGGKVRK WKVKGAVFGTIDGRVTYVLDK G+V SMYDNLLDGAAHSKEALKA+
Sbjct: 1 MFGMKTACAALAFVGQANGFVPAALGRSALQTSGSAQRVSSTALRMVSVGQAAPDFKLNNQNGKPVTLSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGIVTSMYDNLLDGAAHSKEALKAL 190
BLAST of mRNA_H-canaliculatus_F_contig1190.1670.1 vs. uniprot
Match: D8LJF6_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF6_ECTSI) HSP 1 Score: 263 bits (671), Expect = 4.380e-82 Identity = 133/147 (90.48%), Postives = 140/147 (95.24%), Query Frame = 1
Query: 133 MVSVGQAAPDFKLNDQNGKPVSLSSFKNKKKVVVFFYPKDSTPGCTKEACTFQSDLSKFKQAGAEVIGVSSDADHSSFVAENNLSMTLLSDIGGKVRKEWKVKGAVFGTIDGRVTYVLDKKGVVVSMYDNLLDGAAHSKEALKAVTA 573
MVSVGQAAPDFKLN+QNGKPV+LSSFKNKKKVVVFFYPKDSTPGCTKEA TFQSDL+KFK+AGAEVIG+SSDADH+ FV ENNLSMTLLSDIGGKVRK WKVKGAVFGTIDGRVTYVLDK GVV SMYDNLLDGAAHSKEALKA+ A
Sbjct: 1 MVSVGQAAPDFKLNNQNGKPVALSSFKNKKKVVVFFYPKDSTPGCTKEAQTFQSDLAKFKKAGAEVIGISSDADHTEFVKENNLSMTLLSDIGGKVRKAWKVKGAVFGTIDGRVTYVLDKNGVVTSMYDNLLDGAAHSKEALKALEA 147
BLAST of mRNA_H-canaliculatus_F_contig1190.1670.1 vs. uniprot
Match: A0A0G4FWI1_VITBC (Thioredoxin domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FWI1_VITBC) HSP 1 Score: 188 bits (477), Expect = 9.240e-53 Identity = 94/147 (63.95%), Postives = 112/147 (76.19%), Query Frame = 1
Query: 127 LRMVSVGQAAPDFKLNDQNGKPVSLSSFKNKKKVVVFFYPKDSTPGCTKEACTFQSDLSKFKQAGAEVIGVSSDADHSSFVAENNLSMTLLSDIGGKVRKEWKVKGAVFGTIDGRVTYVLDKKGVVVSMYDNLLDGAAHSKEALKAV 567
L MV VG+ APDF L DQ+GK V LSSFKNKK VVVFFYP D TPGCTK+A F + L FK+ GAEVIGVSSDADHS F++ L MTLLSDIGG+VRK+W+V GA+FG + GRVTYV+ K G+V +YDNLLD +H +A A+
Sbjct: 48 LSMVKVGEMAPDFSLKDQSGKVVKLSSFKNKKSVVVFFYPADMTPGCTKQAQAFNTALDDFKKLGAEVIGVSSDADHSEFISAYGLKMTLLSDIGGEVRKQWQVPGAMFGALPGRVTYVIGKDGIVKKVYDNLLDSESHIPQARAAL 194
BLAST of mRNA_H-canaliculatus_F_contig1190.1670.1 vs. uniprot
Match: A0A7S2V5C5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5C5_9STRA) HSP 1 Score: 173 bits (439), Expect = 2.960e-47 Identity = 88/156 (56.41%), Postives = 116/156 (74.36%), Query Frame = 1
Query: 103 VQSVSSTALRMVSVGQAAPDFKLNDQNGKPVSLSSFKNKKKVVVFFYPKDSTPGCTKEACTFQSDLSKFKQAGAEVIGVSSDADHSSFVAENNLSMTLLSDIGGKVRKEWKVKGAVFGTIDGRVTYVLDKKGVVVSMYDNLLDGAAHS---KEALK 561
+++ S+ L MVS GQAAP F L DQ+G ++L+S+K KK VV+FFYPKD TPGCTKEA F ++L +F++ GAEVIG+SSDADHS+FV + L M LLSDI G VRK++KV ++FG +DGRVTYV+ K G+V +YDN + +H KEALK
Sbjct: 39 MRTFQSSTLSMVSEGQAAPSFSLKDQSGSTITLASYKGKKDVVLFFYPKDDTPGCTKEAQAFNANLDEFQKMGAEVIGISSDADHSAFVEKYGLKMKLLSDINGAVRKQFKVPSSLFGALDGRVTYVIGKDGIVKKIYDNQFNPESHIDVVKEALK 194
BLAST of mRNA_H-canaliculatus_F_contig1190.1670.1 vs. uniprot
Match: A0A835Z8Y3_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y3_9STRA) HSP 1 Score: 171 bits (434), Expect = 8.380e-47 Identity = 87/156 (55.77%), Postives = 113/156 (72.44%), Query Frame = 1
Query: 100 SVQSVSSTALRMVSVGQAAPDFKLNDQNGKPVSLSSFKNKKKVVVFFYPKDSTPGCTKEACTFQSDLSKFKQAGAEVIGVSSDADHSSFVAENNLSMTLLSDIGGKVRKEWKVKGAVFGTIDGRVTYVLDKKGVVVSMYDNLLDGAAH---SKEAL 558
SV + +LRMV G +APDF L D GK VSLSSFK KK VV+FF+PK TPGCTKEAC F ++L F +AG E+IG+SSDA+ ++F A+ NL MTLL+D GG VRK + V ++FG +DGRVTYV+ K G+V ++DNL+D +H SK+AL
Sbjct: 18 SVARSGAASLRMVKAGDSAPDFTLKDSAGKSVSLSSFKGKKNVVLFFFPKSDTPGCTKEACAFNAELPVFAKAGTEIIGISSDAEQAAFKAKYNLGMTLLADAGGAVRKLYNVPRSMFGALDGRVTYVIGKDGIVKKVHDNLIDAESHVSISKQAL 173
BLAST of mRNA_H-canaliculatus_F_contig1190.1670.1 vs. uniprot
Match: A0A0G4GTF6_9ALVE (Thioredoxin domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GTF6_9ALVE) HSP 1 Score: 164 bits (414), Expect = 8.350e-44 Identity = 80/145 (55.17%), Postives = 105/145 (72.41%), Query Frame = 1
Query: 127 LRMVSVGQAAPDFKLNDQNGKPVSLSSFKNKKKVVVFFYPKDSTPGCTKEACTFQSDLSKFKQAGAEVIGVSSDADHSSFVAENNLSMTLLSDIGGKVRKEWKVKGAVFGTIDGRVTYVLDKKGVVVSMYDNLLDGAAHSKEALK 561
L MV+VG APDFKL DQNG+ VSLSSFK KK VV+FFYPKD TPGCT E F +F + A+++GVSSD DH+ FV++ +TLLSD+GG VR+ +KV A+ G +DGRVTY++ K G V S+Y+N+++ A H +EA K
Sbjct: 35 LSMVNVGDVAPDFKLTDQNGQSVSLSSFKGKKDVVLFFYPKDDTPGCTAECDLFDKAADEFSKLNAKILGVSSDEDHTEFVSKYGFQLTLLSDVGGNVRQTYKVPKAMMGFLDGRVTYIIGKDGKVKSVYENMMEPAKHVEEARK 179
BLAST of mRNA_H-canaliculatus_F_contig1190.1670.1 vs. uniprot
Match: UPI00053C8BA3 (peroxiredoxin Q, chloroplastic n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C8BA3) HSP 1 Score: 161 bits (408), Expect = 1.580e-42 Identity = 86/152 (56.58%), Postives = 101/152 (66.45%), Query Frame = 1
Query: 112 VSSTALRMVSVGQAAPDFKLNDQNGKPVSLSSFKNKKKVVVFFYPKDSTPGCTKEACTFQSDLSKFKQAGAEVIGVSSD--ADHSSFVAENNLSMTLLSDIGGKVRKEWKVKGAVFGTIDGRVTYVLDKKGVVVSMYDNLLDGAAHSKEALK 561
V S+ L VS GQ APDF L DQNGKPVSL F+ K VVV+FYP D TPGCTK+AC F+ KFK+AGAEVIG+S D A H +F ++ L TLLSD G KVRK W + G FG++ GR TYVLDK GVV +Y+N H E LK
Sbjct: 61 VKSSILAKVSQGQVAPDFTLKDQNGKPVSLKKFRGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDTASHKAFASKYKLPYTLLSDEGNKVRKGWGIPGDFFGSLPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLK 211
BLAST of mRNA_H-canaliculatus_F_contig1190.1670.1 vs. uniprot
Match: V4M097_EUTSA (Thioredoxin-dependent peroxiredoxin n=6 Tax=Brassicaceae TaxID=3700 RepID=V4M097_EUTSA) HSP 1 Score: 161 bits (407), Expect = 2.140e-42 Identity = 86/160 (53.75%), Postives = 107/160 (66.88%), Query Frame = 1
Query: 100 SVQSVSSTALRMVSVGQAAPDFKLNDQNGKPVSLSSFKNKKKVVVFFYPKDSTPGCTKEACTFQSDLSKFKQAGAEVIGVSSD--ADHSSFVAENNLSMTLLSDIGGKVRKEWKVKGAVFGTIDGRVTYVLDKKGVVVSMYDNLLDGAAHSKEALKAVTA 573
S S+ S+ V+ GQAAPDF L DQNGKPVSL FK K VV++FYP D +PGCTK+AC+F+ KFK+AGAEVIG+S D A H +F ++ L TLLSD G KVRK+W V G +FG + GR TYVLDK GVV +Y+N H E L+ + A
Sbjct: 56 SSSSLKSSIFAKVNKGQAAPDFTLKDQNGKPVSLKKFKGKP-VVLYFYPADDSPGCTKQACSFRDSYEKFKKAGAEVIGISGDDSASHKAFASKYKLPYTLLSDEGNKVRKDWGVPGDLFGALPGRQTYVLDKNGVVQLIYNNQFQPEKHIDETLRFLKA 214
BLAST of mRNA_H-canaliculatus_F_contig1190.1670.1 vs. uniprot
Match: W7TJV0_9STRA (Peroxiredoxin q n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJV0_9STRA) HSP 1 Score: 159 bits (402), Expect = 3.860e-42 Identity = 86/177 (48.59%), Postives = 113/177 (63.84%), Query Frame = 1
Query: 28 ALAFVSKASGFVPAALGRNSLGTGSVQSVSSTALRMVSVGQAAPDFKLNDQNGKPVSLSSFKNKKKVVVFFYPKDSTPGCTKEACTFQSDLSKFKQAGAEVIGVSSDADHSSFVAENNLSMTLLSDIGGKVRKEWKVKGAVFGTIDGRVTYVLDKKGVVVSMYDNLLDGAAHSKEAL 558
AL+ V A F+P+ G S + M+ VG AAPDF L DQN K V LS+FK KK+VV+FFYPKD TPGCTKEA F + L FK+ GAEV G+SSD DH++FV + L M LLSD+GG RK ++V ++FG +DGRVTYV+ K + +YDN +H +++L
Sbjct: 8 ALSLVMAAQAFMPS--------NGPSMGRSRGVMNMLKVGDAAPDFALKDQNNKVVKLSTFKGKKEVVLFFYPKDDTPGCTKEAKAFSAALGDFKKKGAEVFGISSDEDHTAFVDKYGLQMQLLSDVGGATRKAYQVPSSLFGALDGRVTYVIGKDQKIRLIYDNQFAPESHVEKSL 176
BLAST of mRNA_H-canaliculatus_F_contig1190.1670.1 vs. uniprot
Match: A0A3L6PCT2_PANMI (Thioredoxin-dependent peroxiredoxin n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6PCT2_PANMI) HSP 1 Score: 156 bits (395), Expect = 1.850e-41 Identity = 81/146 (55.48%), Postives = 99/146 (67.81%), Query Frame = 1
Query: 130 RMVSVGQAAPDFKLNDQNGKPVSLSSFKNKKKVVVFFYPKDSTPGCTKEACTFQSDLSKFKQAGAEVIGVSSD--ADHSSFVAENNLSMTLLSDIGGKVRKEWKVKGAVFGTIDGRVTYVLDKKGVVVSMYDNLLDGAAHSKEALK 561
R+V+ G P+F L DQNG+PVSL+ FK K VVV+FYP D TPGCTK+AC F+ KFK+AGAEV+G+S D A H +F + L TLLSD G +VRKEW V G +FGT+ GR TYVLDK GVV +Y+N H E LK
Sbjct: 7 RLVTKGSVPPNFTLKDQNGRPVSLNKFKGKP-VVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVLGISGDDTASHKAFAQKYRLPFTLLSDEGNRVRKEWGVPGDLFGTLPGRQTYVLDKNGVVQYIYNNQFQPEKHIGETLK 151 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1190.1670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1190.1670.1 >prot_H-canaliculatus_F_contig1190.1670.1 ID=prot_H-canaliculatus_F_contig1190.1670.1|Name=mRNA_H-canaliculatus_F_contig1190.1670.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=192bp MYGMKIGCAALAFVSKASGFVPAALGRNSLGTGSVQSVSSTALRMVSVGQback to top mRNA from alignment at H-canaliculatus_F_contig1190:13072..16204+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1190.1670.1 ID=mRNA_H-canaliculatus_F_contig1190.1670.1|Name=mRNA_H-canaliculatus_F_contig1190.1670.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3133bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1190:13072..16204+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1190:13072..16204+ >mRNA_H-canaliculatus_F_contig1190.1670.1 ID=mRNA_H-canaliculatus_F_contig1190.1670.1|Name=mRNA_H-canaliculatus_F_contig1190.1670.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1152bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1190:13072..16204+ (Hapterophycus canaliculatus Oshoro5f female)back to top |