mRNA_H-canaliculatus_F_contig11870.1648.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11870.1648.1
Unique NamemRNA_H-canaliculatus_F_contig11870.1648.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11870.1648.1 vs. uniprot
Match: D7FPL2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPL2_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 6.180e-47
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 VCRHWLRGLCMIGDNCGYLHKMDRNRMPICRWRTDCQVEGCAFRHEEEQEAPECAMYQQGFCRQGPTCRFR 213
            VCRHWLRGLCMIGD+CGYLHKMDRNRMPICRWRTDCQVEGCAFRHEEEQEAPECAMYQQGFCRQGPTCRFR
Sbjct:   36 VCRHWLRGLCMIGDSCGYLHKMDRNRMPICRWRTDCQVEGCAFRHEEEQEAPECAMYQQGFCRQGPTCRFR 106
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BLAST of mRNA_H-canaliculatus_F_contig11870.1648.1 vs. uniprot
Match: A0A6S8YHI5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8YHI5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 9.920e-32
Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 VCRHWLRGLCMIGDNCGYLHKMDRNRMPICRWRTDCQVEGCAFRHEEEQEAPECAMYQQGFCRQGPTCRFR 213
            VCRHWLRGLCM GDNC +LH+MD +RMP+CRW  +C+++ C ++HE E + P+C  YQQGFC  GP CR+R
Sbjct:   76 VCRHWLRGLCMKGDNCEFLHQMDMDRMPVCRWGENCRIKDCPYKHEAEADKPQCVFYQQGFCYHGPECRYR 146
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BLAST of mRNA_H-canaliculatus_F_contig11870.1648.1 vs. uniprot
Match: A0A067BL61_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BL61_SAPPC)

HSP 1 Score: 108 bits (270), Expect = 4.840e-28
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 VCRHWLRGLCMIGDNCGYLHKMDRNRMPICRWRTDCQVEGCAFRHEEEQEAPECAMYQQGFCRQGPTCRFR 213
            VCRHWLRGLCM GDNC +LH+ D ++MP CRW  +CQV  C FRH  +++  ECA Y+QGFC  G  CR+R
Sbjct:   48 VCRHWLRGLCMKGDNCEFLHQFDMSKMPECRWGMECQVPECPFRHVPDEDRMECAFYKQGFCSHGSACRYR 118
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BLAST of mRNA_H-canaliculatus_F_contig11870.1648.1 vs. uniprot
Match: A0A2D4CHV0_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHV0_PYTIN)

HSP 1 Score: 112 bits (281), Expect = 7.240e-28
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 VCRHWLRGLCMIGDNCGYLHKMDRNRMPICRWRTDCQVEGCAFRHEEEQEAPECAMYQQGFCRQGPTCRFR 213
            VCRHWLRGLCM GDNC +LH+ D  RMP CRW  +CQV  C FRH  ++E  ECA Y+QGFC  GP CR+R
Sbjct:   51 VCRHWLRGLCMKGDNCEFLHQFDMARMPECRWGMECQVPECPFRHVPDEERVECAFYRQGFCSHGPNCRYR 121
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11870.1648.1 vs. uniprot
Match: A0A2D4CCY1_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CCY1_PYTIN)

HSP 1 Score: 112 bits (281), Expect = 2.190e-27
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 VCRHWLRGLCMIGDNCGYLHKMDRNRMPICRWRTDCQVEGCAFRHEEEQEAPECAMYQQGFCRQGPTCRFR 213
            VCRHWLRGLCM GDNC +LH+ D  RMP CRW  +CQV  C FRH  ++E  ECA Y+QGFC  GP CR+R
Sbjct:   67 VCRHWLRGLCMKGDNCEFLHQFDMARMPECRWGMECQVPECPFRHVPDEERVECAFYRQGFCSHGPNCRYR 137
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11870.1648.1 vs. uniprot
Match: A0A8K1FJ65_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJ65_PYTOL)

HSP 1 Score: 112 bits (280), Expect = 2.950e-27
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    1 VCRHWLRGLCMIGDNCGYLHKMDRNRMPICRWRTDCQVEGCAFRHEEEQEAPECAMYQQGFCRQGPTCRFR 213
            VCRHWLRGLCM GDNC +LH+ D ++MP CRW  +CQV  C FRH  ++E  ECA Y+QGFC  GP CR+R
Sbjct:   47 VCRHWLRGLCMKGDNCEFLHQYDMSKMPECRWGMECQVPECPFRHVPDEERVECAFYKQGFCSHGPNCRYR 117
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11870.1648.1 vs. uniprot
Match: A0A3R6W760_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6W760_9STRA)

HSP 1 Score: 108 bits (269), Expect = 6.480e-27
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 VCRHWLRGLCMIGDNCGYLHKMDRNRMPICRWRTDCQVEGCAFRHEEEQEAPECAMYQQGFCRQGPTCRFR 213
            VCRHWLRGLCM GDNC +LH+ D ++MP CRW  +CQV  C FRH  +++  ECA Y+QGFC  G  CR+R
Sbjct:   49 VCRHWLRGLCMKGDNCEFLHQYDMSKMPECRWGMECQVPECPFRHVPDEDRMECAFYKQGFCSHGAACRYR 119
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11870.1648.1 vs. uniprot
Match: A0A484E9D2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E9D2_BRELC)

HSP 1 Score: 107 bits (267), Expect = 3.420e-26
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 VCRHWLRGLCMIGDNCGYLHKMDRNRMPICRWRTDCQVEGCAFRHEEEQEAPECAMYQQGFCRQGPTCRFR 213
            VCRHWLR LCM GDNC +LH+ D ++MP CRW  +CQV  C FRH  ++E  ECA Y+QGFC  G +CR+R
Sbjct:   64 VCRHWLRALCMKGDNCEFLHQYDMSKMPECRWGMECQVPECPFRHVPDEERVECAFYKQGFCSHGSSCRYR 134
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11870.1648.1 vs. uniprot
Match: F0W8E6_9STRA (Uncharacterized protein AlNc14C34G3076 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W8E6_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.570e-26
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    1 VCRHWLRGLCMIGDNCGYLHKMDRNRMPICRWRTDCQVEGCAFRHEEEQEAPECAMYQQGFCRQGPTCRFR 213
            VCRHWLRGLCM GD+C +LH+ D ++MP CRW  +CQV  C FRH  +++  ECA Y+QGFC  GP CR+R
Sbjct:   63 VCRHWLRGLCMKGDSCEFLHQYDMSKMPECRWGMECQVPECPFRHVPDEDRMECAFYRQGFCSHGPNCRYR 133
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11870.1648.1 vs. uniprot
Match: A0A6A5AS27_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AS27_9STRA)

HSP 1 Score: 108 bits (269), Expect = 4.640e-26
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    1 VCRHWLRGLCMIGDNCGYLHKMDRNRMPICRWRTDCQVEGCAFRHEEEQEAPECAMYQQGFCRQGPTCRFR 213
            VCRHWLRGLCM GDNC +LH+ D ++MP CRW  +CQV  C FRH  +++  ECA Y+QGFC  G  CR+R
Sbjct:   49 VCRHWLRGLCMKGDNCEFLHQYDMSKMPECRWGMECQVPECPFRHVPDEDRMECAFYKQGFCSHGAACRYR 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11870.1648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPL2_ECTSI6.180e-4798.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6S8YHI5_9STRA9.920e-3260.56Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A067BL61_SAPPC4.840e-2859.15Uncharacterized protein (Fragment) n=1 Tax=Saprole... [more]
A0A2D4CHV0_PYTIN7.240e-2863.38Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A2D4CCY1_PYTIN2.190e-2763.38Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A8K1FJ65_PYTOL2.950e-2761.97Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R6W760_9STRA6.480e-2759.15Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A484E9D2_BRELC3.420e-2659.15Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
F0W8E6_9STRA3.570e-2659.15Uncharacterized protein AlNc14C34G3076 n=1 Tax=Alb... [more]
A0A6A5AS27_9STRA4.640e-2659.15Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11870contigH-canaliculatus_F_contig11870:299..937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue2.9e-32
Seed eggNOG ortholog2880.D7FPL2
KEGG koko:K14404
KEGG Pathwayko03015,ko05164,map03015,map05164
GOsGO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009966,GO:0009987,GO:0010363,GO:0010467,GO:0010468,GO:0010646,GO:0010941,GO:0010942,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0023051,GO:0031123,GO:0031124,GO:0031323,GO:0031347,GO:0031349,GO:0031440,GO:0031974,GO:0031981,GO:0032991,GO:0034052,GO:0034641,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050684,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1900363,GO:1901360,GO:1901363,GO:1903311,GO:2000031,GO:2001023,GO:2001038
EggNOG free text desc.N6-methyladenosine-containing RNA binding
EggNOG OGsCOG5084@1,KOG1040@2759,KOG1902@1,KOG1902@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11870.1648.1prot_H-canaliculatus_F_contig11870.1648.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11870 299..907 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928888.8872375-CDS-H-canaliculatus_F_contig11870:298..4221622928888.8872375-CDS-H-canaliculatus_F_contig11870:298..422Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11870 299..422 -
1696845602.2741368-CDS-H-canaliculatus_F_contig11870:298..4221696845602.2741368-CDS-H-canaliculatus_F_contig11870:298..422Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11870 299..422 -
1622928888.8994792-CDS-H-canaliculatus_F_contig11870:845..9071622928888.8994792-CDS-H-canaliculatus_F_contig11870:845..907Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11870 846..907 -
1696845602.2907481-CDS-H-canaliculatus_F_contig11870:845..9071696845602.2907481-CDS-H-canaliculatus_F_contig11870:845..907Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11870 846..907 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928888.9101987-UTR-H-canaliculatus_F_contig11870:907..9371622928888.9101987-UTR-H-canaliculatus_F_contig11870:907..937Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11870 908..937 -
1696845602.3017313-UTR-H-canaliculatus_F_contig11870:907..9371696845602.3017313-UTR-H-canaliculatus_F_contig11870:907..937Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11870 908..937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11870.1648.1

>prot_H-canaliculatus_F_contig11870.1648.1 ID=prot_H-canaliculatus_F_contig11870.1648.1|Name=mRNA_H-canaliculatus_F_contig11870.1648.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=62bp
MIGDNCGYLHKMDRNRMPICRWRTDCQVEGCAFRHEEEQEAPECAMYQQG
FCRQGPTCRFR*
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mRNA from alignment at H-canaliculatus_F_contig11870:299..937-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11870.1648.1 ID=mRNA_H-canaliculatus_F_contig11870.1648.1|Name=mRNA_H-canaliculatus_F_contig11870.1648.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=639bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11870:299..937- (Hapterophycus canaliculatus Oshoro5f female)
GTATGTCGGCACTGGTTACGAGGGCTGTGCATGATTGGGGACAACTGTGG
GTATCTGCACAAGATGGATCGAAACAGGATGCCCATCTGCAGGTGAGCTC
GAGAATATGCTTGCAATCGAAGACGTGGTGGATTTGAAGCCCCCCCCCTC
CAGCCCTCCGGGCACCAGCGCCCTAGTTTCGAGAGTTGTTGCATTTGATG
CAGTCTCGACGAGGGTGAGGCTCTTGTTGAGAAAATCGCGACCCGAGCGG
GTTTTTTAGGCATGTCGGAAAAAAAACAGTTCAATTTCACCGATCGTTTC
GGAGTTCATCAAAAGTTGTTGCGTTTTTGTATACACCCTTTCATCGCGGA
GGGTGCGATGCTTTCTCCCTCCGCTTTCAGGGGTCCGTCAATGCACCAGT
GTGACACGTTCGCCACCAAGCAATTGTTTCGGTCTTGATGTGCACCGTCG
CAACGCCGTGGACAATATCACCAACCATTGCGCAACAATTAAACTAACGA
TACCAATAAGAACAGGTGGCGAACGGATTGTCAGGTGGAGGGGTGTGCGT
TCCGGCACGAGGAGGAGCAGGAGGCCCCGGAGTGCGCCATGTACCAGCAG
GGCTTCTGTCGGCAAGGACCCACGTGCAGATTCCGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11870:299..937-

>mRNA_H-canaliculatus_F_contig11870.1648.1 ID=mRNA_H-canaliculatus_F_contig11870.1648.1|Name=mRNA_H-canaliculatus_F_contig11870.1648.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11870:299..937- (Hapterophycus canaliculatus Oshoro5f female)
ATGATTGGGGACAACTGTGGGTATCTGCACAAGATGGATCGAAACAGGAT
GCCCATCTGCAGATGATTGGGGACAACTGTGGGTATCTGCACAAGATGGA
TCGAAACAGGATGCCCATCTGCAGGTGGCGAACGGATTGTCAGGTGGAGG
GGTGTGCGTTCCGGCACGAGGAGGAGCAGGAGGCCCCGGAGTGCGCCATG
TACCAGCAGGGCTTCTGTCGGCAAGGACCCACGTGCAGATTCCGGTGAGT
GGCGAACGGATTGTCAGGTGGAGGGGTGTGCGTTCCGGCACGAGGAGGAG
CAGGAGGCCCCGGAGTGCGCCATGTACCAGCAGGGCTTCTGTCGGCAAGG
ACCCACGTGCAGATTCCGGTGA
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