mRNA_H-canaliculatus_F_contig1182.1609.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1182.1609.1 vs. uniprot
Match: D7G4V8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V8_ECTSI) HSP 1 Score: 283 bits (723), Expect = 3.610e-78 Identity = 299/843 (35.47%), Postives = 383/843 (45.43%), Query Frame = 1
Query: 25 GNPVAGQNGLGSSYQRYVLHHLPSLHHLDLKRVTDHDHD--QQRGTSHLKHPXXXXXXXXXXXXXXXXXXXXXXXXXXDRXXXXXXXXXXXXXXXSVSARSRAMSLSESG--RP-GAAKGFGRPSTTDGTHVGNKNXXXXXXXXXXKDINATPSSRMQEQQHNRWASAKDD-------SNGGSSERQ-----GVSGQPGAEATACTSVGNLEMNILLLLQGCRLGFG-ITMSGYQIKLREQVRPNVFTSTGSSGMSRAAXXXXXXXXXXXXXXXXXXXRTALKERREAIEAARRDQECWERRGRASTSSRPRHRTP------GRENIK------------------AISGNN----GSTGGGVGGXARSSPXXXXRSPIPPESRRTSSAGHPGSGSRAAVTNDGGVXXXXXXXXXXXXXXXXXXXXXGGVSGGVGYFELEQRISR-KDGKGEAARTEEGERLSRSRQGSGSGITLKVYGDVWRWLGDEKVCSLREKVVEARFSLVHVTSVARKAEAIAQTFPNLSCLRMLDNDICSLKQLERLRPLLSGLHTLHLGRKNSLTKNASLVALRAWVKVQGCGARGHLILEIPPSTMRAEEEHCLSRGRDGSHHYPQQQQRQPESNTEGTRSRQSASSLPPDGAANVIQAPXXXXXXXXXXXXXXXXXXXAAARGLGADGNNIH--------VAVEQRRKGGGLSSEASRERAL---------AGASAERGTATAA----GALLGSRGPSCSEGHLPVPGAAFPPPRTATALPAAAAADAAFERLLSARERAASSSWGAIVLSIGGENSRRGAQTTRDVARDSPG-SGSAWMTSSRGAKLVCNLMV 2346
GNPVAGQNGLGSSY+ Y+L HLP+LHHLDLKRVTDH Q +L P S +A AM S G +P G ++ G +T GT+ ++ +A SR + + +S + S GG R V P + A S G + L + G ++G R R V + G+ GMSRAA +TALKERREAIEAAR ECWERRG S +SR RHR+ G++N A +G N +TGGG PXXXXRSP RRTSS+ + GS GGV G +SGGVGYFELEQR+ + G G+ A + G G GITLKVYGDVWRWLGD KVCSLRE+VVEARFSLVHVTSVARKA IAQTFPNLSCL++LDNDI SL+QLERLRP+L+ L LHLG KN +T+NAS ALRAWVK QG + + P A + + G D + QQQQ P +N ++ + S S P A + A + G+ + +N H + + +R + G A +++ + +G E+ T +A+ G + S+ + +E + AA P + DAAFERL AR RAASSSWGAI L+ G+ T + D G +G AW +S+RGAKL CN MV
Sbjct: 263 GNPVAGQNGLGSSYRSYILQHLPNLHHLDLKRVTDHGQSISHQGSDGNLAPPTTRTASADDARESRGGGNNGR----------------------SRTAFHEAMGNSGKGSRKPSGTSRTGGNGVSTSGTNRNERSNDGFPVLLGQG--SADTQSRAEHHPGSSLSSPQXXXXXXXXXSRGGDDPRGLHRAGPVMSAPAPDKGAIGSDGRVRGGAWEQLSQQTMAAGECAITGGDSSTRA-ARKEVVLAVGN-GMSRAAEAREAVALKRAKTDRDEREKTALKERREAIEAAR---ECWERRGGGSITSRARHRSSRDSTSTGKDNTSRKTSAHVKPPPASSPSCSAPTGPNPADSSNTGGGAVPPRPEPPXXXXRSPTXXX-RRTSSSANTGSEVAGVARTGGGVGGRRSGNAGRR----------GSISGGVGYFELEQRLRHNRMGVGDVAASGGGV------PGGAGGITLKVYGDVWRWLGDGKVCSLREQVVEARFSLVHVTSVARKASTIAQTFPNLSCLQLLDNDIRSLRQLERLRPMLTNLTALHLG-KNPVTRNASEAALRAWVKGQG-----PCVSLVSPGHGPASDGRSICTG-DRRQYTQQQQQHCPLTNASASQQQYSPPSTPTTQATPPLPAAPTPHPPCGTGSNNAKPLGGSDV-GVPSRNSNGHEKGCEKTTIRILERGEAGNTVIAARKDKQMQSNGDNKPGSGGIIEQSTRSASERQSGPTVRSQHTAVNESNNTAASAALVRVECTDRDPLVST-DAAFERLAEARSRAASSSWGAIALA--------GSSTASHLGDDPDGVNGMAWASSARGAKLACNGMV 1042
BLAST of mRNA_H-canaliculatus_F_contig1182.1609.1 vs. uniprot
Match: A0A6H5JFV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV0_9PHAE) HSP 1 Score: 266 bits (679), Expect = 5.460e-72 Identity = 303/863 (35.11%), Postives = 381/863 (44.15%), Query Frame = 1
Query: 1 SLLELSLDGNPVAGQNGLGSSYQRYVLHHLPSLHHLDLKRVTDHDHDQQRGTSHLKHPXXXXXXXXXXXXXXXXXXXXXXXXXXDRXXXXXXXXXXXXXXXSVSARSRAMSLSESG--RP-GAAKGFGRPSTTDGTHVGNKNXXXXXXXXXXKDINATPSSRMQEQQHN---------------RWASAKDDSNGGSSERQG-VSGQPGAEATACTSVGNLE----MNILLLLQGCRLG-FGITMSGYQIKLREQVRPNVFTSTGSSGMSRAAXXXXXXXXXXXXXXXXXXXRTALKERREAIEAARRDQECWERRGRASTSSRPRHRTPGRENIKAISGNNGSTGGGVGGXARSSPXXXX--------------------------------RSPIPPESRRTSSAGHPGSGSRAAVTNDGGVXXXXXXXXXXXXXXXXXXXXXGGVSGGVGYFELEQRISRKD-GKGEAARTEEGERLSRSRQGSGSGITLKVYGDVWRWLGDEKVCSLREKVVEARFSLVHVTSVARKAEAIAQTFPNLSCLRMLDNDICSLKQLERLRPLLSGLHTLHLGRKNSLTKNASLVALRAWVKVQGCGARGHLILEIPPSTMRAEEEHCLSRGRDGSHHYPQQQQRQPESNTEGTRSRQSASSLPPDGAANVIQAPXXXXXXXXXXXXXXXXXXXAAARGLGADGNNIH--------VAVEQRRKGGGLSSEASRERALAGAS---------AERGTATAAGALLGSRGPSCSEGHLPVPGAAFPPPRTA------TALPAAAAADAAFERLLSARERAASSSWGAIVLSIGGENSRRGAQTTRDVARDSPG-SGSAWMTSSRGAKLVCNLMV 2346
SL+ELSL GNPVA QNGLGSSY+ Y+L HLP LHHLDLKRVTDH G S + H + S +A M S G +P GA + G +T GT+ + + + ++ + + H+ + DD G R G V P + A S G + + + +Q G GIT R R V + G+ GMSRAA +TALKERREAIEAARR ECWERRG S +SR RHR P R++ A ST + P XX RSP PP SRRTSS + GS GGV G +SGGVGYFELEQR+ K G G+ A + G G+G GITLKVYGDVWRWLGD KVCSLRE+VVEARFSLVHVTSVARKA IAQTFPNLSCL++LDNDI SL+QLE LRP+L+ L L+LG KN +T++AS ALRAWVK QG + + P A + + G H QQQQ+ P +N + S S P AA + A G+ + +N H + V ++ + G A +++ + E+ T +A+ GP+ H V + P A T A+ DAAFERL AR RAASSSWGAI L+ G+ T V+ D G + AW +S+RGAKL CN MV
Sbjct: 291 SLMELSLFGNPVAVQNGLGSSYRSYILQHLPKLHHLDLKRVTDH------GQS-ISHQYSDGNMAPSTTRTASADDARESRGGGNNGR-------------SRTAFHETMGNSGKGSRKPSGAWRTGGNGFSTSGTNSNEGSNDGFPVLL----THGSADTQSRGEHHSGSXXXXXXXXXXXXXXXSQGGDDPRG--LHRAGPVMSAPAPDKGAIGSDGMVRGGAWEQVTVFVQTMGAGECGITAGDSS---RGAARKQVVLAVGT-GMSRAAEAREAVTLKRAKTDREEWEKTALKERREAIEAARRA-ECWERRGGGSITSRARHRNP-RDSTTA---GKDSTSRKTSAHVKPPPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPTPP-SRRTSSLANTGSEVAGVTRTVGGVGGRRSRDTGRR----------GSISGGVGYFELEQRLRHKSMGVGDVAASGGG-----VPSGAG-GITLKVYGDVWRWLGDGKVCSLREQVVEARFSLVHVTSVARKASTIAQTFPNLSCLQLLDNDIRSLRQLEHLRPMLTNLTALYLG-KNPVTRSASEAALRAWVKGQG-----PCVSLVSPGHGPASDGRNVCTGDRRLH--TQQQQQSPLTNAFAGQQHSSPPSTPTTQAAPPLPA-APTPHPPCGTGTNNVKPLGGGDMGVPSRHSNGHENGCEKTTIRVLEQGEAGNTVIAARQDKKMQCNGDNMPGFEDIVEQSTRSASER---QSGPTVRSEHTAVNESNNTPASAALVRIDCTDRDPLASTDAAFERLAEARSRAASSSWGAIALA--------GSSTASHVSDDPDGVNDMAWASSARGAKLACNGMV 1081 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1182.1609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1182.1609.1 >prot_H-canaliculatus_F_contig1182.1609.1 ID=prot_H-canaliculatus_F_contig1182.1609.1|Name=mRNA_H-canaliculatus_F_contig1182.1609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=808bp SLLELSLDGNPVAGQNGLGSSYQRYVLHHLPSLHHLDLKRVTDHDHDQQRback to top mRNA from alignment at H-canaliculatus_F_contig1182:388..5789+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1182.1609.1 ID=mRNA_H-canaliculatus_F_contig1182.1609.1|Name=mRNA_H-canaliculatus_F_contig1182.1609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5402bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1182:388..5789+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1182:388..5789+ >mRNA_H-canaliculatus_F_contig1182.1609.1 ID=mRNA_H-canaliculatus_F_contig1182.1609.1|Name=mRNA_H-canaliculatus_F_contig1182.1609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4848bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1182:388..5789+ (Hapterophycus canaliculatus Oshoro5f female)back to top |