mRNA_H-canaliculatus_F_contig11813.1608.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11813.1608.1
Unique NamemRNA_H-canaliculatus_F_contig11813.1608.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11813.1608.1 vs. uniprot
Match: D8LLF1_ECTSI (Kinesin (KAR3 subfamily) (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLF1_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 1.430e-76
Identity = 154/201 (76.62%), Postives = 162/201 (80.60%), Query Frame = 1 
Query:    1 VNLTLALAPLEERLQAKERAWNSERRELMVRSEASLRSTRVAEDRCRELERRKSXXXXXXXXXXXXXXXXXXEIEQRESKTAESFWQRTVAADREKTRLENALDQAEARVVTLNKEKSELETGLLPIQSENSSLKFRLIESEKEKERKAGDDVFNLRKEMQRLQETICSQADRVVAASISEQVATPAGGXXXGVEAMVVAQ 603
            VNLTLALAPLEERLQAKERAW SERREL+ RSEA+LRS RVAEDRCRE+ERRKS                  EIEQRESKTA SFWQRTVAADREKTRLENALDQAEA+VVTL KEKSELE GL+PIQSENSSLKFRLIE+EKEKERKAGDD+ NLR EMQRLQETICSQADRVVAAS+SE   T       G  AMV AQ
Sbjct:  563 VNLTLALAPLEERLQAKERAWESERRELVSRSEANLRSARVAEDRCREVERRKSEMEEERHSLDAELRRLRGEIEQRESKTAASFWQRTVAADREKTRLENALDQAEAKVVTLGKEKSELEAGLMPIQSENSSLKFRLIEAEKEKERKAGDDISNLRMEMQRLQETICSQADRVVAASMSELSPT----NDTGGRAMVTAQ 759
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BLAST of mRNA_H-canaliculatus_F_contig11813.1608.1 vs. uniprot
Match: A0A6H5KIL1_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL1_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 5.650e-63
Identity = 157/253 (62.06%), Postives = 165/253 (65.22%), Query Frame = 1 
Query:    1 VNLTLALAPLEERLQAKERAWNSERRELMVRSEASLRSTRVAEDRCRELERRKSXXXXXXXXXXXXXXXXXXEIEQRESKTAESFWQRTVAADREKTRLENALDQAEARVVTLNKEKSELETGLLPIQSENSSLKFRLIESEK----------------------------------------------------EKERKAGDDVFNLRKEMQRLQETICSQADRVVAASISEQVATPAGGXXXGVEAMVVAQ 603
            VNLTLALAPLEERLQAKERAW SERREL+ RSEA+LR  RVAEDRCR       XXXXXXXXXXXX      EIEQRESKTA SFWQRTVAADREKTRLENALDQAEA+VV L KEK+ELE GL+PIQSENSSLKFRLIE+EK                                                    EKERKAGDD+ NLR EMQRLQETICSQADRVVAAS+SE   T       G  AMV AQ
Sbjct:   11 VNLTLALAPLEERLQAKERAWESERRELVSRSEANLRRMRVAEDRCRXXXXXXXXXXXXXXXXXXXLRRLRGEIEQRESKTAASFWQRTVAADREKTRLENALDQAEAKVVNLGKEKTELEAGLMPIQSENSSLKFRLIEAEKVASRVLTAEEGLRFSETQLEVLKSELAATSAQLTAVQTELAQQKAGARKQLEEKERKAGDDISNLRMEMQRLQETICSQADRVVAASMSELSPT----NDTGGRAMVTAQ 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11813.1608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLF1_ECTSI1.430e-7676.62Kinesin (KAR3 subfamily) (Partial) (Fragment) n=1 ... [more]
A0A6H5KIL1_9PHAE5.650e-6362.06Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11813contigH-canaliculatus_F_contig11813:670..3520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score261.5
Seed ortholog evalue3.1e-67
Seed eggNOG ortholog2880.D8LLF1
KEGG koko:K10405
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size603
Cds size603
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11813.1608.1prot_H-canaliculatus_F_contig11813.1608.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11813 670..3520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928882.7120068-CDS-H-canaliculatus_F_contig11813:669..9961622928882.7120068-CDS-H-canaliculatus_F_contig11813:669..996Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11813 670..996 +
1696845599.9834635-CDS-H-canaliculatus_F_contig11813:669..9961696845599.9834635-CDS-H-canaliculatus_F_contig11813:669..996Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11813 670..996 +
1622928882.7240274-CDS-H-canaliculatus_F_contig11813:1566..16681622928882.7240274-CDS-H-canaliculatus_F_contig11813:1566..1668Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11813 1567..1668 +
1696845600.0091643-CDS-H-canaliculatus_F_contig11813:1566..16681696845600.0091643-CDS-H-canaliculatus_F_contig11813:1566..1668Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11813 1567..1668 +
1622928882.7354789-CDS-H-canaliculatus_F_contig11813:2876..29321622928882.7354789-CDS-H-canaliculatus_F_contig11813:2876..2932Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11813 2877..2932 +
1696845600.0239427-CDS-H-canaliculatus_F_contig11813:2876..29321696845600.0239427-CDS-H-canaliculatus_F_contig11813:2876..2932Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11813 2877..2932 +
1622928882.7500238-CDS-H-canaliculatus_F_contig11813:3402..35201622928882.7500238-CDS-H-canaliculatus_F_contig11813:3402..3520Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11813 3403..3520 +
1696845600.0436146-CDS-H-canaliculatus_F_contig11813:3402..35201696845600.0436146-CDS-H-canaliculatus_F_contig11813:3402..3520Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11813 3403..3520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11813.1608.1

>prot_H-canaliculatus_F_contig11813.1608.1 ID=prot_H-canaliculatus_F_contig11813.1608.1|Name=mRNA_H-canaliculatus_F_contig11813.1608.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=201bp
VNLTLALAPLEERLQAKERAWNSERRELMVRSEASLRSTRVAEDRCRELE
RRKSEMEEERHSLEAELRRLRGEIEQRESKTAESFWQRTVAADREKTRLE
NALDQAEARVVTLNKEKSELETGLLPIQSENSSLKFRLIESEKEKERKAG
DDVFNLRKEMQRLQETICSQADRVVAASISEQVATPAGGGGGGVEAMVVA
Q
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mRNA from alignment at H-canaliculatus_F_contig11813:670..3520+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11813.1608.1 ID=mRNA_H-canaliculatus_F_contig11813.1608.1|Name=mRNA_H-canaliculatus_F_contig11813.1608.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2851bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11813:670..3520+ (Hapterophycus canaliculatus Oshoro5f female)
GTCAACCTCACGCTGGCCCTGGCGCCGCTGGAGGAGCGCCTGCAGGCCAA
GGAGCGGGCGTGGAACTCGGAGCGGCGCGAGCTAATGGTGCGGTCGGAAG
CCAGCCTGAGGAGCACCAGGGTGGCGGAAGACCGCTGCCGCGAGCTCGAG
CGCCGGAAATCGGAGATGGAAGAGGAGAGGCATTCGCTGGAGGCGGAGCT
GCGGCGGCTGAGGGGGGAGATCGAGCAGCGAGAGAGCAAGACCGCGGAGA
GCTTCTGGCAAAGGACGGTCGCGGCGGACAGGGAGAAGACGCGCCTGGAG
AACGCCCTCGACCAAGCCGAGGCTAGGGTAAGGCTTTAGGGACGCCTCGT
GGGGTGCAAAGGGCGGCGGAGGTAGTGGCTGCTCGTGGTGGTGGCGATGG
CCGCTGGTCTTTGCTTGGGCTTGGCCCGGGGCTGACTTGCCTCTGTCTCT
GGGTTGACGTCGCTTGCGTGCGCACGATTTTCTCGGCGATGGCTCCGCGC
TGTTCCCACAGAGATGGTGGAGTGTCACGAGGGTCAGCAGTCAAGGTCAA
AGTAGGGCCGCTTGTCAGGAGCGCGGTGAGAGAACGTCGTCGCCGATCGG
GTTCGCCGCAAGTACCCAGATCCTCGTCGGTACGTTTTCACGCACTCGAG
CCCCTTCGTACCTAGGCGGCTCCTTTTCCTCCGCATTGTACCCGTTGCCG
AGGTCCATCGCGTGCTGTGTCTGCTTCCGCCCTTATCCCATCGCGCACCG
GCTGCTACCATCCCGTCACGTTTCACTTTTCCCTTGCCGAGTACTCCGAG
TACATGTCTCACTGGCGGGGTCGAGTGTTCGGGACGTGTGTTCACGAGGC
TGACGTCCGTTTGCATCTTCTCGCTCGTTCCGCCGCGGTGACCCCAGGTG
GTGACCTTGAACAAGGAGAAATCGGAGCTTGAGACGGGGCTGCTGCCGAT
CCAGTCGGAGAACAGCTCGCTCAAGTTCCGGCTCATTGAGTCCGAAAAGG
TAGAGAGCGGCAGCAAGGCCGGGACGAGCGCACGCGCACGCCCAGGAGGC
TTCGCGTGTGTCTCTTGTGCTGTCTTTTCACCGGCGCCCCTGCGTTTCTG
CAAAGGACGCCCCCTTCGGATGCACGAAGCGTGCTGCCACCGTGGGCGGT
GGCCCTTCTTATCGTCGTCGATTGTTGTATTTACCGACGTTTCGGTGTCT
CACTTCCTGTTGTTGTTTTTTGTTGATTGTGCACTTGCCGCTGATTTTTG
CTCCGCCTTTTTCTTGGTTTTGTTTCTCGCTGCTGGTGTTTTTCGCCGGT
GTCTCCGCCCTTTGCACGGGTCGCTCTTGCCCTCGCCAGGTGGCGTCGCG
CGTGCTGACGGCGGAGGAAGGCCTCCGCTTTTCCGAGACGCAGCTGGAAG
TGCTCAAGTCGGAGCTCGCGGCGACTTCGGCTCAACTGACGGCGGTGCAA
ACGGAGCTCGCACACCAGAAGGCGGGGTGAGAAATAAGGAGAAAGAGCAA
GGGGGAGCGGGTAAAAACAAGAGGCGGCAGGTAAAAGGTCAGCTTGTCGT
CCTGTGCACTCGCTGCTGCCAATGGATCCGCTCGTTCGTGCCTGCCCGAG
AGCGTTGGGTACTCGTAATGGGTTCGTCTGTACGTTGCACGCAAGGCGTC
AGGCAGGGATCGCGAAGGGGGCACCGCGTTTTCTGGATCCTTTGCGGGGT
CGGCCGTCTTTCTCGATCTCGCCCGTCAAGAGAAGGGCAAGCGTGGCGTG
GGTGGGGGTCGGAGATAGACCTTGCTTTCGGAAGTGGTGGTGGACGTGAG
CGCAGATCCTCGGCGCTCGCAGGTTGTGGAGGAGGCCGTCCGTCAGAGCG
CGGGTCCCCTGCCCGGGCACTGCATGGAGCCCTGGACCCGAAAGCAGTGG
GCCTGGCCACAAGGCTAGTGGCTCGCGTGGCTGCTCTCGAACGGGAATTG
CCCTCCCGGTTCTCGTTCGACTTCTTTGGCAGCTTTGGGACCCCGCATGC
CGTCTCCGACTCTTCCAGAACCTCTTCGTTGAAAGTTGCTGCGGGTGCTG
TTATTCTTCGGAGTATGCGACAAGCTATCCGCCTGGCTGTCAGTTCCCAT
TTTTTCTAGGAGCGCTGGGCGCGTGGAGCTGTTAACCGACCGGTCTTGGT
TGGTGCTCGTCTGTCTGCGCGCCTCTCTCCGTGCGCAGGGCGAGGAAGCA
GCTGGAGGAGAAGGAGCGGAAAGCCGGGGACGACGTGTTCAACTTGAGGA
AGGAGATGCAGAGGTGGGAGGGAGGGCGAAGAGGAAGAGCTTCTCTGTGC
GGGGGGAGTCGTTCCTTGCGGTCCTAGGACAAAGCTGTGGCAACAGAACT
CAAGCTCTCAGAGCCTTCACCTTTTGGTCCGCCTGCCGTCGTCGCTGCCA
CTCGTTGCGGCGACTGCTGCTGTCCGCGTAGGCTCCGAGGGCGATGAGAC
TCGATGGCGAACGCGTGTGGCCGGTCAAGACTTCTGCTGTAGCGTACCTG
CCGACGGGTCGGCTTCCTACAGCCTGAACAGCCGTGTCCGTTCGCCACAA
CGACCGTTACAACAACCAAAAACAGCCACGAAACGTGCGCAATCGTCTCC
TCCCTTGCCGCCTTCACAACCATTCGCGGTCGCCGCGCTACCCCTTTCTG
CTCCTGGCCAAATAATTCTGGATCACCTGCTCTCTGTCTTCGTGTTTTTT
TTCCTTTTTTTTGGCGCAACTTGCGATCGACAGGTTGCAGGAGACTATCT
GCAGCCAGGCGGACCGGGTGGTGGCAGCCTCCATCTCCGAACAGGTTGCT
ACGCCCGCGGGTGGCGGCGGCGGCGGCGTGGAGGCCATGGTGGTAGCCCA
A
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11813:670..3520+

>mRNA_H-canaliculatus_F_contig11813.1608.1 ID=mRNA_H-canaliculatus_F_contig11813.1608.1|Name=mRNA_H-canaliculatus_F_contig11813.1608.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1206bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11813:670..3520+ (Hapterophycus canaliculatus Oshoro5f female)
GTCAACCTCACGCTGGCCCTGGCGCCGCTGGAGGAGCGCCTGCAGGCCAA
GGAGCGGGCGTGGAACTCGGAGCGGCGCGAGCTAATGGTGCGGTCGGAAG
CCAGCCTGAGGAGCACCAGGGTGGCGGAAGACCGCTGCCGCGAGCTCGAG
CGCCGGAAATCGGAGATGGAAGAGGAGAGGCATTCGCTGGAGGCGGAGCT
GCGGCGGCTGAGGGGGGAGATCGAGCAGCGAGAGAGCAAGACCGCGGAGA
GCTTCTGGCAAAGGACGGTCGCGGCGGACAGGGAGAAGACGCGCCTGGAG
AACGCCCTCGACCAAGCCGAGGCTAGGGTCAACCTCACGCTGGCCCTGGC
GCCGCTGGAGGAGCGCCTGCAGGCCAAGGAGCGGGCGTGGAACTCGGAGC
GGCGCGAGCTAATGGTGCGGTCGGAAGCCAGCCTGAGGAGCACCAGGGTG
GCGGAAGACCGCTGCCGCGAGCTCGAGCGCCGGAAATCGGAGATGGAAGA
GGAGAGGCATTCGCTGGAGGCGGAGCTGCGGCGGCTGAGGGGGGAGATCG
AGCAGCGAGAGAGCAAGACCGCGGAGAGCTTCTGGCAAAGGACGGTCGCG
GCGGACAGGGAGAAGACGCGCCTGGAGAACGCCCTCGACCAAGCCGAGGC
TAGGGTGGTGACCTTGAACAAGGAGAAATCGGAGCTTGAGACGGGGCTGC
TGCCGATCCAGTCGGAGAACAGCTCGCTCAAGTTCCGGCTCATTGAGTCC
GAAAAGGTGGTGACCTTGAACAAGGAGAAATCGGAGCTTGAGACGGGGCT
GCTGCCGATCCAGTCGGAGAACAGCTCGCTCAAGTTCCGGCTCATTGAGT
CCGAAAAGGAGAAGGAGCGGAAAGCCGGGGACGACGTGTTCAACTTGAGG
AAGGAGATGCAGAGGAGAAGGAGCGGAAAGCCGGGGACGACGTGTTCAAC
TTGAGGAAGGAGATGCAGAGGTTGCAGGAGACTATCTGCAGCCAGGCGGA
CCGGGTGGTGGCAGCCTCCATCTCCGAACAGGTTGCTACGCCCGCGGGTG
GCGGCGGCGGCGGCGTGGAGGCCATGGTGGTAGCCCAAGTTGCAGGAGAC
TATCTGCAGCCAGGCGGACCGGGTGGTGGCAGCCTCCATCTCCGAACAGG
TTGCTACGCCCGCGGGTGGCGGCGGCGGCGGCGTGGAGGCCATGGTGGTA
GCCCAA
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