mRNA_H-canaliculatus_F_contig11813.1607.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11813.1607.1
Unique NamemRNA_H-canaliculatus_F_contig11813.1607.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11813.1607.1 vs. uniprot
Match: D8LLF1_ECTSI (Kinesin (KAR3 subfamily) (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLF1_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 5.720e-26
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    1 QPSSFVSEEVSEEVSSVTVTSAACGCQHELGCAIGAFGGQLPAGENGTSIEVRDRLKELQGRTSMLEQEK 210
            +PSS VSEEVSEE SSVTVTSAACGC H+ GCAIGA GGQ+PAGENG S+EVRDRLKELQGRTS LEQEK
Sbjct:  494 EPSSVVSEEVSEE-SSVTVTSAACGCHHQHGCAIGAIGGQMPAGENGFSVEVRDRLKELQGRTSTLEQEK 562
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11813.1607.1 vs. uniprot
Match: A0A6H5KIW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIW8_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.370e-25
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:   10 SFVSEEVSEEVSSVTVTSAACGCQHELGCAIGAFGGQLPAGENGTSIEVRDRLKELQGRTSMLEQEKAR 216
            S VSEEVSEE SSVTVTSAACGC H+ GCAIGA GGQ+PAG+NG S+EVRDRLKELQGRTS LEQEKAR
Sbjct:  513 SVVSEEVSEE-SSVTVTSAACGCHHQHGCAIGAIGGQMPAGDNGFSVEVRDRLKELQGRTSTLEQEKAR 580
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11813.1607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLF1_ECTSI5.720e-2684.29Kinesin (KAR3 subfamily) (Partial) (Fragment) n=1 ... [more]
A0A6H5KIW8_9PHAE4.370e-2584.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11813contigH-canaliculatus_F_contig11813:128..376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue4.8e-22
Seed eggNOG ortholog2880.D8LLF1
KEGG koko:K10405
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
Ec32 ortholog descriptionkinesin (KAR3 subfamily)
Ec32 orthologEc-27_002410.2
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928882.6606708-CDS-H-canaliculatus_F_contig11813:127..3761622928882.6606708-CDS-H-canaliculatus_F_contig11813:127..376Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11813 128..376 +
1696845599.9594123-CDS-H-canaliculatus_F_contig11813:127..3761696845599.9594123-CDS-H-canaliculatus_F_contig11813:127..376Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11813 128..376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11813.1607.1prot_H-canaliculatus_F_contig11813.1607.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11813 128..376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11813.1607.1

>prot_H-canaliculatus_F_contig11813.1607.1 ID=prot_H-canaliculatus_F_contig11813.1607.1|Name=mRNA_H-canaliculatus_F_contig11813.1607.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=83bp
QPSSFVSEEVSEEVSSVTVTSAACGCQHELGCAIGAFGGQLPAGENGTSI
EVRDRLKELQGRTSMLEQEKARGMQDKGAENK*
back to top

mRNA from alignment at H-canaliculatus_F_contig11813:128..376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11813.1607.1 ID=mRNA_H-canaliculatus_F_contig11813.1607.1|Name=mRNA_H-canaliculatus_F_contig11813.1607.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=249bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11813:128..376+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCCGAGTTCGTTCGTGTCGGAGGAGGTGAGCGAGGAAGTTTCTTCTGT
AACGGTCACCTCGGCGGCTTGCGGCTGCCAGCACGAGCTCGGGTGTGCCA
TCGGCGCGTTCGGTGGCCAGCTGCCCGCGGGCGAGAACGGTACCTCGATC
GAGGTCAGGGACCGCCTCAAGGAGCTGCAAGGGAGGACGTCGATGCTGGA
GCAAGAGAAGGCGAGAGGGATGCAAGACAAGGGGGCGGAAAACAAGTAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11813:128..376+

>mRNA_H-canaliculatus_F_contig11813.1607.1 ID=mRNA_H-canaliculatus_F_contig11813.1607.1|Name=mRNA_H-canaliculatus_F_contig11813.1607.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=498bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11813:128..376+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCCGAGTTCGTTCGTGTCGGAGGAGGTGAGCGAGGAAGTTTCTTCTGT
AACGGTCACCTCGGCGGCTTGCGGCTGCCAGCACGAGCTCGGGTGTGCCA
TCGGCGCGTTCGGTGGCCAGCTGCCCGCGGGCGAGAACGGTACCTCGATC
GAGGTCAGGGACCGCCTCAAGGAGCTGCAAGGGAGGACGTCGATGCTGGA
GCAAGAGAAGGCGAGAGGGATGCAAGACAAGGGGGCGGAAAACAAGTAGC
AGCCGAGTTCGTTCGTGTCGGAGGAGGTGAGCGAGGAAGTTTCTTCTGTA
ACGGTCACCTCGGCGGCTTGCGGCTGCCAGCACGAGCTCGGGTGTGCCAT
CGGCGCGTTCGGTGGCCAGCTGCCCGCGGGCGAGAACGGTACCTCGATCG
AGGTCAGGGACCGCCTCAAGGAGCTGCAAGGGAGGACGTCGATGCTGGAG
CAAGAGAAGGCGAGAGGGATGCAAGACAAGGGGGCGGAAAACAAGTAG
back to top