mRNA_H-canaliculatus_F_contig1181.1604.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1181.1604.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI) HSP 1 Score: 429 bits (1104), Expect = 1.060e-132 Identity = 273/478 (57.11%), Postives = 298/478 (62.34%), Query Frame = 2
Query: 1040 MGKMNLAVVLGATLALVGTLTPVAAQSTCTGGIPGVQSTSLDVCCTEACGTCGGPGCTPANTSSLTAGDCCATEIVDSGVFCSDSGAAPCILSTAAAPADSVCDNGQTGVQDPDTDVCCPLECGEFCGGDGCGTIPGVDASQCCAAAIMDSGVVCGEGVDAPCTQESVADETSVCSNGLPGVESED--VCCDAACGTCGGAECGNKFGLTGADCCIAEIEAAGELCSVTGSAPCVVDPPVVTPSVCPNGLEGVADGSVCCAVECNGVCGGIGCGSIAGTNGASDCCSATILAANVTXXXXXXXXXXX-TYTDAPAAAPIV---TMAPLAVGETL-----------APTSGSRDIDMSFAXXXXXXXXXXXXXXXXXXXXXFTGVPSAAPTSAMD---------------FGESSXXXXXXXXXXXXXAPTGSAXXXXXXXXXXXXXXXXXXXXXXXXXVVTIAAMAGGMFAVFAAARN 2377
M KMN A +LG LAL G+ V AQ TC GGI GV+STSLDVCCT CGTCGG GCTPANTSSLTA DCCATEI +SGV CSD+G APCILST AA ADSVCDNGQTGVQDPDTDVCCPLECGE CGG+GCGTIPGVDASQCCA+ I SG+VCG+G++APCTQ +VA SVCSNG PG+E+ED VCCD AC CGG+ CGN GLTGADCC I A ELCS GSAPCVVDPP VT S C NGL GV+ GSVCCA CNGV TNGA DCCSATILAAN+ T+T APA P V T APLA GET+ APT GSRD+D TGVP+ APTS + GES XXXXXXXXXXX A + VV++AAMAGGMFAV AA RN
Sbjct: 1 MNKMNFAALLGVVLALAGS---VGAQ-TCAGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGVMCSDTGVAPCILSTEAASADSVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVDASQCCASIIEQSGIVCGDGIEAPCTQVAVAVADSVCSNGFPGIENEDATVCCDPACVVCGGSTCGNVAGLTGADCCTGTIIANDELCSEKGSAPCVVDPPEVTASTCANGLAGVSSGSVCCAEVCNGVXXXXXXXXXXXTNGAEDCCSATILAANIACVDTAPCVMVEGTFTPAPAVVPTVAATTTAPLAPGETVTMAPTPTSQTAAPTPGSRDLDFG------------------------TGVPTPAPTSVEEAGMSSXXXXXXXXXXIGESMAXXXXXXXXXXXTAGPSALGDTMAPSTAPPGAATAGSAALSAGSVVSVAAMAGGMFAVLAATRN 450
BLAST of mRNA_H-canaliculatus_F_contig1181.1604.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE) HSP 1 Score: 384 bits (986), Expect = 3.340e-115 Identity = 212/353 (60.06%), Postives = 246/353 (69.69%), Query Frame = 2
Query: 1037 MMGKMN--LAVVLGATLALVGTLTPVAAQSTCTGGIPGVQSTSLDVCCTEACGTCGGPGCTPANTSSLTAGDCCATEIVDSGVFCSDSGAAPCILSTAAAPADSVCDNGQTGVQDPDTDVCCPLECGEFCGGDGCGTIPGVDASQCCAAAIMDSGVVCGEGVDAPCTQESV-ADETSVCSNGLPGVESED--VCCDAACGTCGGAECGNKFGLTGADCCIAEIEAAGELCSVTGSAPCVVDPPVVTPSVCPNGLEGVADGSVCCAVECNGVCGGIGCGSIAGTNGASDCCSATILAANVTXXXXXXXXXXX---TYTDAP--------AAAPIVTMAPLAVGETLAPTSGSRD 2047
M+GK A+V A LVGT+TP A + C+ G+ G+QSTSLDVCC E C CGG CTPANTSSLT+ DCCATEIV+SG FC S AAPCI++TAAA DSVC+NGQTGV DPDTDVCCPLECG+ CGG+GCG+IPGV+A+QCC++ I++SG VC + V APC + AD ++ CSNG+ G+E +CCDAACG CGG CGN GLTG DCC EI +LCSVT APCV+DPP S CPNGL GV DGSVCCA ECNGVCGG GCGSI GTNGA DCCS TILA V TYTDAP AAAP T+AP AV T AP +G+R+
Sbjct: 1 MLGKATSFTALVCVAIALLVGTMTP--AGAVCSNGLEGIQSTSLDVCCVEGCEVCGGVDCTPANTSSLTSADCCATEIVESGTFCDVSMAAPCIITTAAAANDSVCENGQTGVPDPDTDVCCPLECGDSCGGEGCGSIPGVNATQCCSSLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLDCCSEEIAVVNDLCSVTNEAPCVMDPPDFVASTCPNGLAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILATGVDCEEGVMAPCIMLNGTYTDAPMAAPTFPPAAAPGTTVAPGAVAATEAPVAGTRE 351
BLAST of mRNA_H-canaliculatus_F_contig1181.1604.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI) HSP 1 Score: 220 bits (561), Expect = 7.640e-62 Identity = 114/187 (60.96%), Postives = 141/187 (75.40%), Query Frame = 2
Query: 1037 MMGKMN--LAVVLGATLALVGTLTPVAAQSTCTGGIPGVQSTSLDVCCTEACGTCGGPGCTPANTSSLTAGDCCATEIVDSGVFCSDSGAAPCILSTAAAPADSVCDNGQTGVQDPDTDVCCPLECGEFCGGDGCGTIPGVDASQCCAAAIMDSGVVCGEGVDAPCTQESV-ADETSVCSNGLPGVE 1588
M+GK A+V A LVGT+TP A + C+ G+ G+QSTSLD CC E CG CGG GCTPANTSSLT+ DCCATEI++SG C S AAPCI++TAAA DSVC+NGQTGVQDPDTDVCCPL CG+ CGG+GCG++ GVDA+QCC+ I++SG VC + V APC + AD ++ CSNG+ G+E
Sbjct: 1 MLGKATSFTALVCVAIALLVGTMTP--AGAVCSNGLEGIQSTSLDACCVEECGLCGGVGCTPANTSSLTSADCCATEIIESGTLCEVSMAAPCIITTAAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQCCSNLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIE 185
BLAST of mRNA_H-canaliculatus_F_contig1181.1604.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE) HSP 1 Score: 147 bits (372), Expect = 1.020e-31 Identity = 104/307 (33.88%), Postives = 137/307 (44.63%), Query Frame = 2
Query: 1124 CTGGIPGVQSTSLDVCCTEACGTCGGPGCTPANTSSLTAGDCCATEIVDSGVFCSDSGAAPCILSTAAAPADSVCDNGQTGVQDPDTDVCCPLECGEFCGGDGCGTIPG-VDASQCCAAAIMDSGVVCGEGVDAPCTQESVADE---------------------------------------------TSVCSNGLPGVESEDVCCDAACGTCGGAECGNKFGLTGAD-CCIAEIEAAGELCSVTGSAPCVVDPPVVTPSVCPNGLEGVADGSVCCAVECNGVCGGIGCGSIAGTNGASDCCSATI 1903
C+ GIPG+QS S CC CG CGG C L A +CC ++IV+ G CS + APC + GV CC ECGE CGG GC G + A CC + I + G +C ++APC + T VCSNG+PG+++++ CC A CG CGG+ C G GAD CC+++I GELCS+ APC +D C NG+ G+ G+ CC EC G CGG GC + G G +CC + I
Sbjct: 916 CSNGIPGIQSGSA--CCLAECGACGGLDCDEFG-GGLGADNCCVSDIVEHGELCSIALEAPCYID---------------GVS------CCLTECGE-CGGSGCAEYGGGLGADNCCESNIEEYGELCSIKLEAPCVVDGTVPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVCSNGIPGIQTDNACCLAECGACGGSGCDEFGGGLGADNCCVSDIVEYGELCSIALEAPCYID------DTCYNGIPGIQSGNACCLAECGG-CGGSGCAQLGGGLGEDNCCQSEI 1190
BLAST of mRNA_H-canaliculatus_F_contig1181.1604.1 vs. uniprot
Match: D8LML4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML4_ECTSI) HSP 1 Score: 107 bits (266), Expect = 1.440e-21 Identity = 63/120 (52.50%), Postives = 71/120 (59.17%), Query Frame = 2
Query: 1739 VDPPVVTPSVCPNGLEGVADGSVCCAVECNGVCGGIGCGSIAGTNGASDCCSATILAANV---TXXXXXXXXXXXTYTDAPAAAPI--------VTMAPLAVGETLAPTSGSRDIDMSFA 2065
+DPP S CPNG+ GV DGSVCCA ECNGVCGG GCGSI GTNGA DCCS+TIL V TYTDAP AAP T+AP AV T AP +G+R+ + A
Sbjct: 1 MDPPDFVASTCPNGIAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSSTILTTGVDCDVGVVAPCIMLNGTYTDAPMAAPTFPPVAAPGTTVAPGAVATTEAPLAGTREFQFTQA 120
BLAST of mRNA_H-canaliculatus_F_contig1181.1604.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI) HSP 1 Score: 105 bits (262), Expect = 8.770e-19 Identity = 81/264 (30.68%), Postives = 112/264 (42.42%), Query Frame = 2
Query: 1343 VCDNGQTGVQDPDTDVCCPLECGEFCGGDGCGTI-PGVDASQCCAAAIMDSGVVCGEGVDAPCTQESVADE--------------------------------------TSVCSNGLPGVESEDVCCDAACGTCGGAECGNKFGLTGAD-CCIAEIEAAGELCSVTGSAPCVVDPPVVTPS--------------------------------VCPNGLEGV--ADGSVCCAVECNGVCGGIGCGSIAGTN-GASDCCSATILA 1909
VC NG G+Q + CC ECGE CGG C G+ A CC + I + G +C ++APC + A T CSNG+PG++S++ CC A CG CGG++C G GAD CC+++I GE CS+ APC +D PS C G+ G+ +DG+VCC C +CGG GC ++ + G CCS+ IL+
Sbjct: 1164 VCSNGIPGIQSGVS--CCLAECGE-CGGSDCAEYGDGLGADNCCQSNIEEYGELCSIKLEAPCVVDDSAPAPSPVTMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDTCSNGIPGIQSDNACCLAECGACGGSDCDEFGGGLGADNCCVSDIVEHGEPCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSDGAVCCPTGCT-MCGGSGCSTVGMPDYGPESCCSSDILS 1423
BLAST of mRNA_H-canaliculatus_F_contig1181.1604.1 vs. uniprot
Match: A0A7S4N5U2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N5U2_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 3.220e-10 Identity = 52/119 (43.70%), Postives = 63/119 (52.94%), Query Frame = 2
Query: 1337 DSVCDNG-QTGVQDPDTDVCCPLECGEFCGGDGCGTIPGVDASQCCAAAIMDSGVVCGEGVDAPCTQESVADETSVCSNGLPGVESEDVCCDAACGTCGGAECGNKFGLTGADCCIAEI 1690
D C NG + G+ CC CG+ CGG GC PG AS CCA + D G C G +APC +AD T CS+G+ S D CC A+CGTCGG CG + G G+ CC I
Sbjct: 258 DPSCKNGLRNGI------ACCAAMCGDQCGGSGCSQRPG-GASACCANTVKDEGFPCVMG-EAPCV---MADPT--CSSGIQ--SSNDACCAASCGTCGGRGCGGRPG-GGSACCSGSI 360
BLAST of mRNA_H-canaliculatus_F_contig1181.1604.1 vs. uniprot
Match: A0A6H5JSA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA0_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 7.850e-10 Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query: 1754 VTPSVCPNGLEGVADGSVCCAVECNGVCGGIGCGSIAGTNGASDCCSATI 1903
++PS C NG+ GV+DG VCC C G CGG+GCG+IAGTNGASDCC TI
Sbjct: 1 MSPSTCSNGIPGVSDGEVCCLEAC-GQCGGVGCGAIAGTNGASDCCPDTI 49
BLAST of mRNA_H-canaliculatus_F_contig1181.1604.1 vs. uniprot
Match: A0A0G4EQ49_VITBC (GH10 domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EQ49_VITBC) HSP 1 Score: 71.6 bits (174), Expect = 1.290e-8 Identity = 75/236 (31.78%), Postives = 98/236 (41.53%), Query Frame = 2
Query: 1142 GVQSTSLDVCCTEACGTCGGPGCTPANTSSLTAGDCCATEIVDSGV--FCSDSGAAPC-----------------ILSTAAAPADS------------VCDNGQTGVQDPDTDVCCPLECGEFCGG-DGCGTIPGVDASQCCAAAIMDSGVVCGEGVDAPCTQESVADETSVCSNGLPGV--ESEDVCCDAACGTCGGAECGNKFGLTGAD-CCIAEIEAAGEL--CSVTGSAPCV 1738
GV T VCC CGTCGG GC A + CC+ EI GV +CS + AAPC +L T AA S +C+ G +PD CCPL CG+ CGG D C G CC + G C PC E ++ C + G + + CC CG+C C ++ G GA+ CC ++I A E C + APC+
Sbjct: 276 GVFHTRRGVCCPRECGTCGGEGC--ALRADGRPDLCCSKEIKQRGVDGYCSMTYAAPCTVDDSMVAQLERGESVRVLGTTAAAVSSNVPQKAQLSNQALCEEELMGKFNPDKQACCPLSCGDDCGGNDAC---MGSQKDICCPMEFENYGPKCETNAPLPCLFELTKEQ--YCKHVAYGSYHAATNACCMRMCGSCEDDGCEDRDG--GAENCCPSQIAANPETPTCELPAWAPCM 502
BLAST of mRNA_H-canaliculatus_F_contig1181.1604.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 7.970e-8 Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 2
Query: 1754 VTPSVCPNGLEGVADGSVCCAVECNGVCGGIGCGSIAGTNGASDCCSATI 1903
V PS C NG+ GV+DG VCC C G CGG GCG+IAGTNGASDCC TI
Sbjct: 287 VAPSTCSNGIPGVSDGDVCCLEAC-GQCGGEGCGAIAGTNGASDCCPDTI 335 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1181.1604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1181.1604.1 >prot_H-canaliculatus_F_contig1181.1604.1 ID=prot_H-canaliculatus_F_contig1181.1604.1|Name=mRNA_H-canaliculatus_F_contig1181.1604.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=448bp MMGKMNLAVVLGATLALVGTLTPVAAQSTCTGGIPGVQSTSLDVCCTEACback to top mRNA from alignment at H-canaliculatus_F_contig1181:20875..27976+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1181.1604.1 ID=mRNA_H-canaliculatus_F_contig1181.1604.1|Name=mRNA_H-canaliculatus_F_contig1181.1604.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7102bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1181:20875..27976+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1181:20875..27976+ >mRNA_H-canaliculatus_F_contig1181.1604.1 ID=mRNA_H-canaliculatus_F_contig1181.1604.1|Name=mRNA_H-canaliculatus_F_contig1181.1604.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2688bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1181:20875..27976+ (Hapterophycus canaliculatus Oshoro5f female)back to top |