mRNA_H-canaliculatus_F_contig1181.1602.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1181.1602.1
Unique NamemRNA_H-canaliculatus_F_contig1181.1602.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1181.1602.1 vs. uniprot
Match: D7G1B1_ECTSI (Calmodulin-like myosin-light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B1_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 8.780e-49
Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:    4 KVDAELLALEGAPSVSAALRALRVSPSS-PDIPPPPAAVRAAAELLLAYVTNALRDPRNPRVHRVRSGNPAFQRALGRLGGCEGAMTAVGFEPRDRGAVFVLRE 312
            +VDAELLALEG PSVSA+LRALR SPSS PD PPP AAVRAAAELLLAYVTNAL+DPRNPRVHRVRSGNPAFQRALGRLGGCEGAMTA+GFEPRDRG VFVLRE
Sbjct: 1052 EVDAELLALEGTPSVSASLRALRESPSSSPDTPPPAAAVRAAAELLLAYVTNALQDPRNPRVHRVRSGNPAFQRALGRLGGCEGAMTAIGFEPRDRGTVFVLRE 1155
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BLAST of mRNA_H-canaliculatus_F_contig1181.1602.1 vs. uniprot
Match: A0A6H5KUV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV1_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.470e-47
Identity = 92/104 (88.46%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:    4 KVDAELLALEGAPSVSAALRALRVSPSS-PDIPPPPAAVRAAAELLLAYVTNALRDPRNPRVHRVRSGNPAFQRALGRLGGCEGAMTAVGFEPRDRGAVFVLRE 312
            KVDAELLALEGAPSVSAALRALR SPSS PD P     VRAAAELLLAYVTNAL+DPRNPRVHRVRSGNPAFQRALGRLGGCEGAMTA+GFEPR RG VFVLRE
Sbjct:   18 KVDAELLALEGAPSVSAALRALRESPSSSPDTPXXXXXVRAAAELLLAYVTNALQDPRNPRVHRVRSGNPAFQRALGRLGGCEGAMTAIGFEPRGRGTVFVLRE 121
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BLAST of mRNA_H-canaliculatus_F_contig1181.1602.1 vs. uniprot
Match: A0A482SU41_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SU41_9ARCH)

HSP 1 Score: 61.2 bits (147), Expect = 1.000e-8
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:    4 KVDAELLALEGAPSVSAALRALRVSPSSPDIPPPPAAVRAAAELLLAYVTNALRDPRNPRVHRVRSGNPAFQRALGRLGGCEGAMTAVGF 273
            ++ +E+ ALEGAPS+SAA+R +R+  S  +       VR   E  L  V N L +P + ++ RV+  NP FQR LGRL G E  M A+G+
Sbjct:  546 ELRSEICALEGAPSISAAVREMRLHHSLTE-------VRLGLETALKIVQNVLGNPHDIKMFRVKKANPVFQRDLGRLRGAELLMNAIGY 628
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1181.1602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1B1_ECTSI8.780e-4990.38Calmodulin-like myosin-light chain n=1 Tax=Ectocar... [more]
A0A6H5KUV1_9PHAE1.470e-4788.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482SU41_9ARCH1.000e-842.22Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1181contigH-canaliculatus_F_contig1181:840..1151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.3
Seed ortholog evalue1.8e-42
Seed eggNOG ortholog2880.D7G1B1
EggNOG free text desc.Tudor domain
EggNOG OGs2CMGM@1,2QQAC@2759
Ec32 ortholog descriptioncalmodulin-like myosin-light chain
Ec32 orthologEc-17_003950.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928881.82644-CDS-H-canaliculatus_F_contig1181:839..11511622928881.82644-CDS-H-canaliculatus_F_contig1181:839..1151Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1181 840..1151 -
1696845599.5648313-CDS-H-canaliculatus_F_contig1181:839..11511696845599.5648313-CDS-H-canaliculatus_F_contig1181:839..1151Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1181 840..1151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1181.1602.1prot_H-canaliculatus_F_contig1181.1602.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1181 840..1151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1181.1602.1

>prot_H-canaliculatus_F_contig1181.1602.1 ID=prot_H-canaliculatus_F_contig1181.1602.1|Name=mRNA_H-canaliculatus_F_contig1181.1602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=104bp
PKVDAELLALEGAPSVSAALRALRVSPSSPDIPPPPAAVRAAAELLLAYV
TNALRDPRNPRVHRVRSGNPAFQRALGRLGGCEGAMTAVGFEPRDRGAVF
VLRE
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mRNA from alignment at H-canaliculatus_F_contig1181:840..1151-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1181.1602.1 ID=mRNA_H-canaliculatus_F_contig1181.1602.1|Name=mRNA_H-canaliculatus_F_contig1181.1602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=312bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1181:840..1151- (Hapterophycus canaliculatus Oshoro5f female)
CCCAAGGTGGACGCGGAACTTCTTGCATTGGAAGGTGCTCCCAGCGTGTC
CGCAGCCCTCCGCGCCCTCCGCGTATCTCCCTCGTCCCCCGACATCCCGC
CCCCCCCAGCCGCCGTACGCGCCGCTGCGGAGCTCCTGCTGGCCTACGTC
ACGAACGCCCTGCGGGACCCTCGAAACCCTCGGGTGCACCGAGTGCGTTC
GGGTAACCCCGCGTTCCAGCGCGCGTTGGGTCGTCTCGGGGGCTGCGAGG
GAGCCATGACCGCGGTGGGATTTGAGCCCCGAGACAGGGGAGCGGTATTT
GTGCTTCGGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1181:840..1151-

>mRNA_H-canaliculatus_F_contig1181.1602.1 ID=mRNA_H-canaliculatus_F_contig1181.1602.1|Name=mRNA_H-canaliculatus_F_contig1181.1602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1181:840..1151- (Hapterophycus canaliculatus Oshoro5f female)
CCCAAGGTGGACGCGGAACTTCTTGCATTGGAAGGTGCTCCCAGCGTGTC
CGCAGCCCTCCGCGCCCTCCGCGTATCTCCCTCGTCCCCCGACATCCCGC
CCCCCCCAGCCGCCGTACGCGCCGCTGCGGAGCTCCTGCTGGCCTACGTC
ACGAACGCCCTGCGGGACCCTCGAAACCCTCGGGTGCACCGAGTGCGTTC
GGGTAACCCCGCGTTCCAGCGCGCGTTGGGTCGTCTCGGGGGCTGCGAGG
GAGCCATGACCGCGGTGGGATTTGAGCCCCGAGACAGGGGAGCGGTATTT
GTGCTTCGGGAGCCCAAGGTGGACGCGGAACTTCTTGCATTGGAAGGTGC
TCCCAGCGTGTCCGCAGCCCTCCGCGCCCTCCGCGTATCTCCCTCGTCCC
CCGACATCCCGCCCCCCCCAGCCGCCGTACGCGCCGCTGCGGAGCTCCTG
CTGGCCTACGTCACGAACGCCCTGCGGGACCCTCGAAACCCTCGGGTGCA
CCGAGTGCGTTCGGGTAACCCCGCGTTCCAGCGCGCGTTGGGTCGTCTCG
GGGGCTGCGAGGGAGCCATGACCGCGGTGGGATTTGAGCCCCGAGACAGG
GGAGCGGTATTTGTGCTTCGGGAG
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