mRNA_H-canaliculatus_F_contig11808.1600.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11808.1600.1
Unique NamemRNA_H-canaliculatus_F_contig11808.1600.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11808.1600.1 vs. uniprot
Match: A0A6H5JHZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ3_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 5.240e-18
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:   10 MANVRPPEVTTSSRAAARGANGLLTTITEKDHDRAVDLEGECGGKQEQHGPPINRMAAALERGGILGWGSYLTFAWAGPFLKLGSTVTLK 279
            MA+V   + T+  +A+ RG  G   T + ++  +    E    G+   H  P NRMAAA++RGGI+GWGSYLTFAWAG FLKLGSTVTLK
Sbjct:    1 MASVCQADKTSQGQASVRG--GQDATASSREQQQRQHAED---GENVAHQQPDNRMAAAMKRGGIMGWGSYLTFAWAGSFLKLGSTVTLK 85
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BLAST of mRNA_H-canaliculatus_F_contig11808.1600.1 vs. uniprot
Match: A0A6H5JGA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGA2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.510e-17
Identity = 43/90 (47.78%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:   10 MANVRPPEVTTSSRAAARGANGLLTTITEKDHDRAVDLEGECGGKQEQHGPPINRMAAALERGGILGWGSYLTFAWAGPFLKLGSTVTLK 279
            MA+VR  +  +  + +  G  G   +  E+     V+  G+   +      P NRMA A++RGGILGWGSYLTFAWAGPFLKLGST+TLK
Sbjct:    1 MASVRQADEASQGQTSIGGGQGPTASPGEQQQHEHVEEGGDVAHQ------PGNRMAEAMQRGGILGWGSYLTFAWAGPFLKLGSTITLK 84
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BLAST of mRNA_H-canaliculatus_F_contig11808.1600.1 vs. uniprot
Match: D8LSW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW2_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 9.610e-17
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:   10 MANVRPPEVTTSSRAAARGANGLLTTITEKDHDRAVDLEGECGGKQEQHGPPINRMAAALERGGILGWGSYLTFAWAGPFLKLGSTVTLK 279
            M +VR  + T+  +A+     G   T + ++  ++  +E E G    Q G   N MA A++RGGILGWGSYLTFAWAGPFLKLGSTVTLK
Sbjct:    1 MGSVRQADQTSQGQASG---GGQRPTASSREQQQSQHVE-EGGNVAHQSG---NLMAEAMKRGGILGWGSYLTFAWAGPFLKLGSTVTLK 83
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BLAST of mRNA_H-canaliculatus_F_contig11808.1600.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.120e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:  175 MAAALERGGILGWGSYLTFAWAGPFLKLGSTVTLK 279
            MA AL+RGGILGWGSYLTFAWAGPFLKLGSTVTLK
Sbjct:    1 MAEALQRGGILGWGSYLTFAWAGPFLKLGSTVTLK 35
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BLAST of mRNA_H-canaliculatus_F_contig11808.1600.1 vs. uniprot
Match: A0A6H5K598_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K598_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.160e-11
Identity = 31/42 (73.81%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:  163 PINRMAA---ALERGGILGWGSYLTFAWAGPFLKLGSTVTLK 279
            PIN   A    ++RGGI+GWGSYLTFAWAG FLKLGSTVTLK
Sbjct:    9 PINPATAWRRPMKRGGIIGWGSYLTFAWAGSFLKLGSTVTLK 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11808.1600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JHZ3_9PHAE5.240e-1851.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGA2_9PHAE3.510e-1747.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSW2_ECTSI9.610e-1750.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSW6_ECTSI1.120e-1294.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K598_9PHAE2.160e-1173.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11808contigH-canaliculatus_F_contig11808:2823..3101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog2880.D8LSW6
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001640.1
Exons1
Model size280
Cds size270
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928881.349672-UTR-H-canaliculatus_F_contig11808:2822..28311622928881.349672-UTR-H-canaliculatus_F_contig11808:2822..2831Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11808 2823..2831 +
1696845599.5068846-UTR-H-canaliculatus_F_contig11808:2822..28311696845599.5068846-UTR-H-canaliculatus_F_contig11808:2822..2831Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11808 2823..2831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928881.3628666-CDS-H-canaliculatus_F_contig11808:2831..31011622928881.3628666-CDS-H-canaliculatus_F_contig11808:2831..3101Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11808 2832..3101 +
1696845599.5173223-CDS-H-canaliculatus_F_contig11808:2831..31011696845599.5173223-CDS-H-canaliculatus_F_contig11808:2831..3101Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11808 2832..3101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11808.1600.1prot_H-canaliculatus_F_contig11808.1600.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11808 2832..3101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11808.1600.1

>prot_H-canaliculatus_F_contig11808.1600.1 ID=prot_H-canaliculatus_F_contig11808.1600.1|Name=mRNA_H-canaliculatus_F_contig11808.1600.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
MANVRPPEVTTSSRAAARGANGLLTTITEKDHDRAVDLEGECGGKQEQHG
PPINRMAAALERGGILGWGSYLTFAWAGPFLKLGSTVTLK
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mRNA from alignment at H-canaliculatus_F_contig11808:2823..3101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11808.1600.1 ID=mRNA_H-canaliculatus_F_contig11808.1600.1|Name=mRNA_H-canaliculatus_F_contig11808.1600.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=279bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11808:2823..3101+ (Hapterophycus canaliculatus Oshoro5f female)
GGGAACAAAATGGCTAATGTGCGCCCGCCCGAGGTCACCACCAGTTCACG
TGCAGCAGCGCGAGGGGCGAACGGTTTACTGACAACGATCACCGAGAAGG
ATCACGATCGTGCGGTAGATTTGGAGGGTGAATGCGGAGGGAAGCAGGAG
CAGCACGGTCCTCCCATCAATCGAATGGCAGCAGCCTTAGAGCGCGGAGG
AATCTTAGGATGGGGGTCCTACTTGACATTTGCCTGGGCTGGACCATTCC
TGAAGCTCGGCTCTACTGTCACGCTTAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11808:2823..3101+

>mRNA_H-canaliculatus_F_contig11808.1600.1 ID=mRNA_H-canaliculatus_F_contig11808.1600.1|Name=mRNA_H-canaliculatus_F_contig11808.1600.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11808:2823..3101+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCTAATGTGCGCCCGCCCGAGGTCACCACCAGTTCACGTGCAGCAGC
GCGAGGGGCGAACGGTTTACTGACAACGATCACCGAGAAGGATCACGATC
GTGCGGTAGATTTGGAGGGTGAATGCGGAGGGAAGCAGGAGCAGCACGGT
CCTCCCATCAATCGAATGGCAGCAGCCTTAGAGCGCGGAGGAATCTTAGG
ATGGGGGTCCTACTTGACATTTGCCTGGGCTGGACCATTCCTGAAGCTCG
GCTCTACTGTCACGCTTAAGATGGCTAATGTGCGCCCGCCCGAGGTCACC
ACCAGTTCACGTGCAGCAGCGCGAGGGGCGAACGGTTTACTGACAACGAT
CACCGAGAAGGATCACGATCGTGCGGTAGATTTGGAGGGTGAATGCGGAG
GGAAGCAGGAGCAGCACGGTCCTCCCATCAATCGAATGGCAGCAGCCTTA
GAGCGCGGAGGAATCTTAGGATGGGGGTCCTACTTGACATTTGCCTGGGC
TGGACCATTCCTGAAGCTCGGCTCTACTGTCACGCTTAAG
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