mRNA_H-canaliculatus_F_contig11803.1598.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11803.1598.1
Unique NamemRNA_H-canaliculatus_F_contig11803.1598.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11803.1598.1 vs. uniprot
Match: D8LM71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM71_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 4.830e-45
Identity = 126/253 (49.80%), Postives = 149/253 (58.89%), Query Frame = 1 
Query:    1 MSRGSPPLWAIEIAEKQETADPA-RSLWDRIESHLRPPEDQNEQLSTRLAARPAMSLGLERNLLEAHLRLLLGKLGVPNTNRLRKEGSAAATPGNDGHENGSGGDGAVPAARQRPQTSRDGELYRRGVHAARSCCVPATGYGFP-EGSPPSREHRPSRKHTSS----------SAPTTPWIPLETQQDRAVYDFLWTSAAGCGTSG-AAGRDGRK---HFDGGGAPGGGRLEAGRSVSRPGTSRXXXSSRSSR 711
            MSR   PLWAIE  E+Q TA  A RSLWDRIESHLRP E+QN+Q   ++AARP M+ GLER LLEAHLRLLLGKLGVP+ N+  K G A+ +P +                R RP T R+ +L RR   + R CC  AT  G P E S P R+    RK + +          S PTTP++PLETQQDRAVY+FL TS    G SG AAGR G       + GG+ G      G S SRPGT R   SSRS+R
Sbjct:    1 MSRCESPLWAIETVEEQHTAGGAPRSLWDRIESHLRPQENQNKQTWQKIAARPTMAPGLERTLLEAHLRLLLGKLGVPSGNQGGKGGLASMSPSSXXXXX-XXXXXXXXVGRPRPHTFREDDLCRRS--STRPCC--ATTAGSPGEDSSPRRKCLNGRKASYARXXXXXXXXCSEPTTPYVPLETQQDRAVYEFLSTSGECDGLSGGAAGRGGNGTHGEAERGGSEG---AAVGNSRSRPGTGRRPGSSRSAR 245
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11803.1598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM71_ECTSI4.830e-4549.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11803contigH-canaliculatus_F_contig11803:1682..3823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size714
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11803.1598.1prot_H-canaliculatus_F_contig11803.1598.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11803 1682..3823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928879.8917918-CDS-H-canaliculatus_F_contig11803:1681..17951622928879.8917918-CDS-H-canaliculatus_F_contig11803:1681..1795Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11803 1682..1795 +
1696845599.3629022-CDS-H-canaliculatus_F_contig11803:1681..17951696845599.3629022-CDS-H-canaliculatus_F_contig11803:1681..1795Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11803 1682..1795 +
1622928879.9085577-CDS-H-canaliculatus_F_contig11803:2895..32031622928879.9085577-CDS-H-canaliculatus_F_contig11803:2895..3203Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11803 2896..3203 +
1696845599.371673-CDS-H-canaliculatus_F_contig11803:2895..32031696845599.371673-CDS-H-canaliculatus_F_contig11803:2895..3203Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11803 2896..3203 +
1622928879.9263146-CDS-H-canaliculatus_F_contig11803:3531..38231622928879.9263146-CDS-H-canaliculatus_F_contig11803:3531..3823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11803 3532..3823 +
1696845599.3857756-CDS-H-canaliculatus_F_contig11803:3531..38231696845599.3857756-CDS-H-canaliculatus_F_contig11803:3531..3823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11803 3532..3823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11803.1598.1

>prot_H-canaliculatus_F_contig11803.1598.1 ID=prot_H-canaliculatus_F_contig11803.1598.1|Name=mRNA_H-canaliculatus_F_contig11803.1598.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=238bp
MSRGSPPLWAIEIAEKQETADPARSLWDRIESHLRPPEDQNEQLSTRLAA
RPAMSLGLERNLLEAHLRLLLGKLGVPNTNRLRKEGSAAATPGNDGHENG
SGGDGAVPAARQRPQTSRDGELYRRGVHAARSCCVPATGYGFPEGSPPSR
EHRPSRKHTSSSAPTTPWIPLETQQDRAVYDFLWTSAAGCGTSGAAGRDG
RKHFDGGGAPGGGRLEAGRSVSRPGTSRRPGSSRSSR*
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mRNA from alignment at H-canaliculatus_F_contig11803:1682..3823+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11803.1598.1 ID=mRNA_H-canaliculatus_F_contig11803.1598.1|Name=mRNA_H-canaliculatus_F_contig11803.1598.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2142bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11803:1682..3823+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCCGTGGCAGCCCACCGCTTTGGGCGATCGAGATTGCCGAGAAGCA
GGAAACAGCTGACCCGGCGCGGTCCTTATGGGACCGCATCGAGTCTCACC
TTCGTCCACCAGAGGTAGGGACCCCCCGGGGTGCCGCGGATGACTCAGAT
TACGTGCATATGGTCGAGGAGGGTCATGCAGTCCCGTGTTCCTACTTCTT
CGATTAGATTACAACTGTACTTCTCGCGCTCGAAGAACGGGGGTCATTTT
CTTCATCAGTTCACGGTGCATGCTTGGCTCTTTTCCAGCCCCATCCAGTG
TTCTGCCGTGAGACTTTTTACAAGTCGAGGCTGCATGGAACGACTTTCTC
TGCAAGCACCACGGTACCAAAGACTCAAGACAGTTGCGCGGGTGCCGCCG
ACGGCTGCCGCGCGTAGGCTCCCTTGTTCGAAGTTTGTGTACCAAAGGGT
TGGGCTGGCGAAACTTGCACCCATTTTCTACCATTTATTTCCGGTATCAG
AGTTGTACTTTGGCTCAATGACATACCCACCAAGAGCAGTCGGGGGGATG
TTCTCGTGGCCAAGACAAAGGCAAGCCTGATGTTTTTATCGATGCACATG
ATACATGACTGAAAGATGTACCTTTTTACTGCAGCAGATGTCGTGAACAA
AAAACTGGTACTCTAGTACAAGTACAGCGTATGCTTTCCGCGACCTGATC
TACAGCAGCACCCTGAAGGAGGCCCGAATATACACAACTCTCCGTCCCGC
ACACGAGCGGCAGGTTTTCACTATTCGGCGTATCATCGGAGAAAGCGTGC
TGGACCGCAACGATGGTTTGTGGAGAGAGGTGGACGCCTTGGAAGACATA
TTGAGGGAGGTTCAGGTATTGAGGCGCAGTTCCATGTGATGCCTCTTGAA
AATAAGTATCGCACTTGTACGTTTGGCACTCACTCTACTACGCGTGCGGG
TTGTCATCCACTTGCTTGATTGCCGTGCTCCACCGCCCACGGTCAACCTG
AGCACAATCATGCAAGATGAGAAGGATGAAGACTTATTCCTGTCGCATAC
CGGCGTAGGCCCAGCGCAGGCGTGGGCCCAGCACTGGTCAGATGCAGCAC
CACCTGCTGTGAGCTACACCTTGCCTGCCGCTCCGACAAGTAAGCCGCCG
GCAAACAAACGCGCTTCAAATACCCAAAACTTGCTTCGAAACGCATCCAT
CCCCGCGCACGCAGGATCAAAACGAGCAGCTGTCGACGAGGCTCGCAGCG
CGGCCAGCAATGTCCCTGGGTCTCGAGAGAAACCTCCTAGAAGCTCACCT
GCGGCTGTTGCTTGGGAAGCTAGGCGTACCGAATACCAACCGTCTGAGGA
AGGAGGGATCGGCGGCGGCGACACCGGGCAACGACGGGCACGAGAACGGC
AGCGGCGGCGACGGAGCGGTTCCGGCGGCGCGACAGAGGCCGCAAACCTC
CCGAGATGGCGAGCTCTACAGGCGCGGCGTGCACGCCGCCAGATCGTGCT
GCGTTCCTGCCACAGGGTACGGGTTGGCTTGTGGGCAGTGCCACAAACCT
CGGGTTTTCCACCCTCAGAACTGCGCGCGCATCGTTAGTCTACCGCGAGA
GGTCCCGCGGCGAAGCTGGTGGCTTTCAAGGAGGCCTCCTCTTCCCTAGG
GAGCGCGTGGATACACCCCTTTCCCCGCCGGCGCTTTGCTTATCACACCT
GACCCTACATCGAACCCCTAAATGCCGACCGTTTCGTCTAGAGGTTTATT
TTCAACCCGCCACACTGCACTCGCCGCTTTCCAGTCGCTGCCAAATTTTC
CACGATGTATTGCCGCTTCCGCCGGTGCGCGCGTCCTCCCTCGACGGTAG
ATTTCCAGAAGGCTCACCACCTAGCCGCGAACATCGGCCCAGTAGGAAGC
ACACAAGCAGCAGCGCACCCACGACGCCCTGGATACCGCTTGAAACCCAG
CAAGACCGAGCCGTGTACGACTTTTTATGGACAAGTGCAGCTGGGTGCGG
CACTAGCGGCGCCGCCGGGCGGGATGGGAGGAAGCACTTTGACGGGGGGG
GCGCGCCTGGGGGTGGCCGGTTGGAGGCTGGAAGAAGTGTGTCGAGACCG
GGGACAAGTAGACGACCAGGGAGTTCTCGGTCGTCGAGGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11803:1682..3823+

>mRNA_H-canaliculatus_F_contig11803.1598.1 ID=mRNA_H-canaliculatus_F_contig11803.1598.1|Name=mRNA_H-canaliculatus_F_contig11803.1598.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1428bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11803:1682..3823+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCCGTGGCAGCCCACCGCTTTGGGCGATCGAGATTGCCGAGAAGCA
GGAAACAGCTGACCCGGCGCGGTCCTTATGGGACCGCATCGAGTCTCACC
TTCGTCCACCAGAGATGAGCCGTGGCAGCCCACCGCTTTGGGCGATCGAG
ATTGCCGAGAAGCAGGAAACAGCTGACCCGGCGCGGTCCTTATGGGACCG
CATCGAGTCTCACCTTCGTCCACCAGAGGATCAAAACGAGCAGCTGTCGA
CGAGGCTCGCAGCGCGGCCAGCAATGTCCCTGGGTCTCGAGAGAAACCTC
CTAGAAGCTCACCTGCGGCTGTTGCTTGGGAAGCTAGGCGTACCGAATAC
CAACCGTCTGAGGAAGGAGGGATCGGCGGCGGCGACACCGGGCAACGACG
GGCACGAGAACGGCAGCGGCGGCGACGGAGCGGTTCCGGCGGCGCGACAG
AGGCCGCAAACCTCCCGAGATGGCGAGCTCTACAGGCGCGGCGTGCACGC
CGCCAGATCGTGCTGCGTTCCTGCCACAGGGTACGGGATCAAAACGAGCA
GCTGTCGACGAGGCTCGCAGCGCGGCCAGCAATGTCCCTGGGTCTCGAGA
GAAACCTCCTAGAAGCTCACCTGCGGCTGTTGCTTGGGAAGCTAGGCGTA
CCGAATACCAACCGTCTGAGGAAGGAGGGATCGGCGGCGGCGACACCGGG
CAACGACGGGCACGAGAACGGCAGCGGCGGCGACGGAGCGGTTCCGGCGG
CGCGACAGAGGCCGCAAACCTCCCGAGATGGCGAGCTCTACAGGCGCGGC
GTGCACGCCGCCAGATCGTGCTGCGTTCCTGCCACAGGGTACGGATTTCC
AGAAGGCTCACCACCTAGCCGCGAACATCGGCCCAGTAGGAAGCACACAA
GCAGCAGCGCACCCACGACGCCCTGGATACCGCTTGAAACCCAGCAAGAC
CGAGCCGTGTACGACTTTTTATGGACAAGTGCAGCTGGGTGCGGCACTAG
CGGCGCCGCCGGGCGGGATGGGAGGAAGCACTTTGACGGGGGGGGCGCGC
CTGGGGGTGGCCGGTTGGAGGCTGGAAGAAGTGTGTCGAGACCGGGGACA
AGTAGACGACCAGGGAGTTCTCGGTCGTCGAGGTAGATTTCCAGAAGGCT
CACCACCTAGCCGCGAACATCGGCCCAGTAGGAAGCACACAAGCAGCAGC
GCACCCACGACGCCCTGGATACCGCTTGAAACCCAGCAAGACCGAGCCGT
GTACGACTTTTTATGGACAAGTGCAGCTGGGTGCGGCACTAGCGGCGCCG
CCGGGCGGGATGGGAGGAAGCACTTTGACGGGGGGGGCGCGCCTGGGGGT
GGCCGGTTGGAGGCTGGAAGAAGTGTGTCGAGACCGGGGACAAGTAGACG
ACCAGGGAGTTCTCGGTCGTCGAGGTAG
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