mRNA_H-canaliculatus_F_contig1169.1498.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1169.1498.1
Unique NamemRNA_H-canaliculatus_F_contig1169.1498.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1169.1498.1 vs. uniprot
Match: D7FLM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM1_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 8.220e-19
Identity = 77/122 (63.11%), Postives = 84/122 (68.85%), Query Frame = 1 
Query:    1 GKESDVMNKTLRAVGSAYDMAGRLGGRFKARAAAXXXXXXXXXXXXXPPGAADXXXXXXXXXGETTPKQ--PKSPHSWGSSSPAGLQRPAWSRKVTGDARKTADEPGAVATTTAGGGNCVIS 360
            GKE D +NKTL+AVGSAYDMAGRLG +FKARA A XXXXXXXXXXXX      XXXXXXXXX    P +  PKSP SWGSSSP GLQR A  +K+ GDA      P       AG GNCV+S
Sbjct:    3 GKEQDTLNKTLKAVGSAYDMAGRLGWKFKARAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEPSRGRPKSPQSWGSSSPNGLQRSARGKKLAGDA------PAPGVAVPAGSGNCVVS 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1169.1498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLM1_ECTSI8.220e-1963.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1169contigH-canaliculatus_F_contig1169:28525..29526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_000620.1
Exons2
Model size363
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1169.1498.1prot_H-canaliculatus_F_contig1169.1498.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1169 28543..29526 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928861.9956145-UTR-H-canaliculatus_F_contig1169:28524..285421622928861.9956145-UTR-H-canaliculatus_F_contig1169:28524..28542Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1169 28525..28542 +
1696845592.9753497-UTR-H-canaliculatus_F_contig1169:28524..285421696845592.9753497-UTR-H-canaliculatus_F_contig1169:28524..28542Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1169 28525..28542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928862.008688-CDS-H-canaliculatus_F_contig1169:28542..285511622928862.008688-CDS-H-canaliculatus_F_contig1169:28542..28551Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1169 28543..28551 +
1696845592.9894521-CDS-H-canaliculatus_F_contig1169:28542..285511696845592.9894521-CDS-H-canaliculatus_F_contig1169:28542..28551Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1169 28543..28551 +
1622928862.0192175-CDS-H-canaliculatus_F_contig1169:29190..295261622928862.0192175-CDS-H-canaliculatus_F_contig1169:29190..29526Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1169 29191..29526 +
1696845592.9984462-CDS-H-canaliculatus_F_contig1169:29190..295261696845592.9984462-CDS-H-canaliculatus_F_contig1169:29190..29526Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1169 29191..29526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1169.1498.1

>prot_H-canaliculatus_F_contig1169.1498.1 ID=prot_H-canaliculatus_F_contig1169.1498.1|Name=mRNA_H-canaliculatus_F_contig1169.1498.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
MNKTLRAVGSAYDMAGRLGGRFKARAAAAAGASKHSARASAPPGAADAAV
AAAAAAGETTPKQPKSPHSWGSSSPAGLQRPAWSRKVTGDARKTADEPGA
VATTTAGGGNCVIS*
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mRNA from alignment at H-canaliculatus_F_contig1169:28525..29526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1169.1498.1 ID=mRNA_H-canaliculatus_F_contig1169.1498.1|Name=mRNA_H-canaliculatus_F_contig1169.1498.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1002bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1169:28525..29526+ (Hapterophycus canaliculatus Oshoro5f female)
GGAAAGGAGTCAGATGTCATGAACAAGGTAAATCACAGAGTAAACAACCG
GCCCCAACCCCCGTGCTATCGCTCGAGAGCCTAGGTTGCGGAGACTAACG
AAGAAGGGAGCTTGAATCCTCACCCTCGGTAACAAGGGGCGCTCTTGTTT
TCAAATGCCCGACAGCCATGAGGCCTTAAGCAACAACTTTTAATGGTTTG
CTCATCAGCGAAGATACCGTGAGCCCAGCCCAAAATTGGAGAACTTGAGG
TGAAGAATATTTGCTGTGCGGAACATGACGCGGCCTGCCTCACAAGTTGA
GGGGCAAGGGCTATGGACCATTCCTTCTTTCGGCAGCCAACATCGGCCTT
CCTACTTGTTTTTCTCGCGAGCACCCACCCGAAGCTGGCCGTCTTGCATT
GTTGAAGGTGTTGCTTTGTACGAAAACATTTTCTGCTACCTTCAACACAC
ACGCGCAGGAGTTGGAACCTGGGAGGTGTGTGCCATCTGTAGGACCAATG
TTTTTCTAAAATGTGCGAGAGAGTTTGTTTCCGCTCATCGCCCAGAAGCC
TACTTTTTGCTTTCGCAACGCCGATCAATGGTAACAAATACGTTTGGTCG
ACGAAAAGTTGTCGGCTTTCGGTGGCACTTTTCTCTTACCAACACAACCT
CTCTTCCCTCCCCTAGACCCTTAGGGCGGTTGGATCGGCATACGACATGG
CGGGACGGCTAGGGGGGAGGTTCAAAGCTCGAGCGGCGGCTGCGGCCGGA
GCTTCGAAACATTCCGCCCGCGCCAGCGCCCCACCAGGCGCTGCAGATGC
AGCGGTCGCGGCGGCAGCAGCAGCCGGAGAAACTACTCCTAAGCAGCCGA
AGTCGCCGCATTCTTGGGGATCTAGTAGCCCTGCCGGCCTTCAGAGGCCA
GCCTGGAGTAGAAAGGTCACAGGGGATGCCCGAAAGACGGCGGATGAACC
AGGCGCCGTAGCCACCACCACCGCTGGAGGCGGGAATTGCGTCATATCAT
GA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1169:28525..29526+

>mRNA_H-canaliculatus_F_contig1169.1498.1 ID=mRNA_H-canaliculatus_F_contig1169.1498.1|Name=mRNA_H-canaliculatus_F_contig1169.1498.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1169:28525..29526+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACAAGATGAACAAGACCCTTAGGGCGGTTGGATCGGCATACGACAT
GGCGGGACGGCTAGGGGGGAGGTTCAAAGCTCGAGCGGCGGCTGCGGCCG
GAGCTTCGAAACATTCCGCCCGCGCCAGCGCCCCACCAGGCGCTGCAGAT
GCAGCGGTCGCGGCGGCAGCAGCAGCCGGAGAAACTACTCCTAAGCAGCC
GAAGTCGCCGCATTCTTGGGGATCTAGTAGCCCTGCCGGCCTTCAGAGGC
CAGCCTGGAGTAGAAAGGTCACAGGGGATGCCCGAAAGACGGCGGATGAA
CCAGGCGCCGTAGCCACCACCACCGCTGGAGGCGGGAATTGCGTCATATC
ATGAACCCTTAGGGCGGTTGGATCGGCATACGACATGGCGGGACGGCTAG
GGGGGAGGTTCAAAGCTCGAGCGGCGGCTGCGGCCGGAGCTTCGAAACAT
TCCGCCCGCGCCAGCGCCCCACCAGGCGCTGCAGATGCAGCGGTCGCGGC
GGCAGCAGCAGCCGGAGAAACTACTCCTAAGCAGCCGAAGTCGCCGCATT
CTTGGGGATCTAGTAGCCCTGCCGGCCTTCAGAGGCCAGCCTGGAGTAGA
AAGGTCACAGGGGATGCCCGAAAGACGGCGGATGAACCAGGCGCCGTAGC
CACCACCACCGCTGGAGGCGGGAATTGCGTCATATCATGA
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