mRNA_H-canaliculatus_F_contig1168.1486.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1168.1486.1
Unique NamemRNA_H-canaliculatus_F_contig1168.1486.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1168.1486.1 vs. uniprot
Match: D7FLT5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT5_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 4.830e-53
Identity = 118/245 (48.16%), Postives = 148/245 (60.41%), Query Frame = 1 
Query:    1 MERDQASREQLANRRPAADSWIPAEASPQPQLDDSFHPETFVNMGQDMG-QETEQEMPLTAESSFQPPADAS-PSVSISTLDSPDSVPLAPVAHRAGSPLSQRVVLGLLAVVVALLGTNAYYFNQAHAWKVHRLDCWCYEGIHTSRYTIHDTRCRHSRVAKLEKDSAT----PKIDVDPLATPPSCPGSQLIDTCWFKVGWGDCTKEVIEDPIKPVEDAFRLAWDSTTEVVGFVVDTIASDFREV 717
            MER+QA REQ+ANR    DSW+P +AS Q QLDDSFHP+TFVN+G  +  QE+ +    T+E+S Q P  A+  SVS  T     S PL   +  +G   + R+VLGLLAVVV LLGTNAY +NQ+ AWK                    +T     +V KLE  + T    P       +T  +CPGSQLIDTCWFKVGWGDC  E +EDP+KP+EDAFR A DS + V+G V +T ASD  +V
Sbjct:    1 MEREQAVREQVANRGLMGDSWVPTDASEQ-QLDDSFHPDTFVNVGNFLSSQESSERARSTSETSSQTPPPATIASVSTVTHVVDPSAPL--TSLLSGGSRAGRIVLGLLAVVVMLLGTNAYSYNQSRAWKA-------------------ETSSLREKVGKLEAAARTSASKPTWSTSTSST--TCPGSQLIDTCWFKVGWGDCANEALEDPVKPIEDAFRFALDSASGVIGAVTETFASDMSQV 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1168.1486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLT5_ECTSI4.830e-5348.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1168contigH-canaliculatus_F_contig1168:16110..20149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001320.1
Exons4
Model size1731
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1168.1486.1prot_H-canaliculatus_F_contig1168.1486.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1168 16110..19150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928860.1664362-CDS-H-canaliculatus_F_contig1168:16109..162381622928860.1664362-CDS-H-canaliculatus_F_contig1168:16109..16238Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1168 16110..16238 +
1696845592.296392-CDS-H-canaliculatus_F_contig1168:16109..162381696845592.296392-CDS-H-canaliculatus_F_contig1168:16109..16238Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1168 16110..16238 +
1622928860.1878865-CDS-H-canaliculatus_F_contig1168:17520..178541622928860.1878865-CDS-H-canaliculatus_F_contig1168:17520..17854Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1168 17521..17854 +
1696845592.3093908-CDS-H-canaliculatus_F_contig1168:17520..178541696845592.3093908-CDS-H-canaliculatus_F_contig1168:17520..17854Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1168 17521..17854 +
1622928860.2000086-CDS-H-canaliculatus_F_contig1168:18429..185421622928860.2000086-CDS-H-canaliculatus_F_contig1168:18429..18542Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1168 18430..18542 +
1696845592.323381-CDS-H-canaliculatus_F_contig1168:18429..185421696845592.323381-CDS-H-canaliculatus_F_contig1168:18429..18542Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1168 18430..18542 +
1622928860.2132893-CDS-H-canaliculatus_F_contig1168:18994..191501622928860.2132893-CDS-H-canaliculatus_F_contig1168:18994..19150Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1168 18995..19150 +
1696845592.3383255-CDS-H-canaliculatus_F_contig1168:18994..191501696845592.3383255-CDS-H-canaliculatus_F_contig1168:18994..19150Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1168 18995..19150 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928860.2293882-UTR-H-canaliculatus_F_contig1168:19150..201491622928860.2293882-UTR-H-canaliculatus_F_contig1168:19150..20149Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1168 19151..20149 +
1696845592.3509293-UTR-H-canaliculatus_F_contig1168:19150..201491696845592.3509293-UTR-H-canaliculatus_F_contig1168:19150..20149Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1168 19151..20149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1168.1486.1

>prot_H-canaliculatus_F_contig1168.1486.1 ID=prot_H-canaliculatus_F_contig1168.1486.1|Name=mRNA_H-canaliculatus_F_contig1168.1486.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=244bp
MERDQASREQLANRRPAADSWIPAEASPQPQLDDSFHPETFVNMGQDMGQ
ETEQEMPLTAESSFQPPADASPSVSISTLDSPDSVPLAPVAHRAGSPLSQ
RVVLGLLAVVVALLGTNAYYFNQAHAWKVHRLDCWCYEGIHTSRYTIHDT
RCRHSRVAKLEKDSATPKIDVDPLATPPSCPGSQLIDTCWFKVGWGDCTK
EVIEDPIKPVEDAFRLAWDSTTEVVGFVVDTIASDFREVKRAT*
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mRNA from alignment at H-canaliculatus_F_contig1168:16110..20149+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1168.1486.1 ID=mRNA_H-canaliculatus_F_contig1168.1486.1|Name=mRNA_H-canaliculatus_F_contig1168.1486.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4040bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1168:16110..20149+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGAGGGACCAAGCGTCGAGGGAGCAGCTGGCGAACCGCCGTCCGGC
CGCGGACAGCTGGATCCCTGCGGAAGCTTCGCCACAGCCCCAGCTTGATG
ACTCCTTTCATCCGGAAACCTTCGTCAACGTTGGGTAAGACACAGCGCCT
CCAAGAACCACGTGGAACCTGCCTGCCTGCTGCCGTAGCCGCGCCGCTCC
GTGGCGCTTACCGCTCTTCGCCGCCCCATCGTCCTTTCTCGTCACGAATG
CAGTACATGCTAACCGGACTGCTGTCGGTGTGTCGCAGTGAAATAACGCA
GCCGTCGTTCAAGAGTTGTTTTTGAATCTTCGTGATTCCCCGCACTAAAT
TTGTTGTGGCGATATCCCCATCGTCAGCAGAGATGTTGTTGCCATCAGAA
CTTCAACCTCGACGAAGGGATCCGCAGATTACAGAATACGCAATATGCTG
CGCGCCGAGCGTGACAAGAGGGTCGGTGTGATCTCGTTGCTTTGATGGCA
TCATGCGATTTGAGCTTCATTTTCTGGCTGGTGACATATCAGCTGGGGTT
CGCTGTACCGTCAAACACAACTATCTGGTACCAAATACGGTATGATAAGT
CCTCCCTACTACTGAAAAGCGCCGTTGATAGCTTTAGGATATCGATGCGT
ACATTTGTGAAATGATGTACCACCTTCCCCGTGAAGGTAAAATTGTGGCG
GCAGTTTTACTCAATGTGCCAGACACATAACGTGGACCTTTCGTTCACGT
GGCCGAGGCTTGAGCGCTGCTGTTTGTGGATGTTATTGGTTTCCTCGTAC
GTACGAACGTAAACAACTGAGAAATGCCTGCTGTACGCTCCTCCCGAACG
GATGGCGCCAACGCTCGACAACCTCTGCTTGCTTTGGGCAAGGCTTTTCT
CTATGTAAAACTTATTGTAGCCTACAAGTACCTTTGACCTATCCGTTGGT
CTCGATGGCTTTGCACCTGGGAGCTAGGACTACGACTGCAGTCCTAGAAA
ACCCATCAGGTTCTTCAGCGGTGGCGACGCCCGGAACAGCACGATGGCGC
GAAGGTCTACCAGACTTGTAGCACACGGGGTTCCCTGCCCTTTCTCTCGT
GCTCCCCGCCCTCGACTCTCGCCGCCCTCCCAAGCAGAGCACGGTATCAT
TCGTCAAAGATCTCGCTCCCCCATCCACGTGGCGTACGTCCCGTTCGTGT
CCGAAAACAACCCGACCTCGTCGACCTCGACCTTCGTTCTCCCCGGCTCT
TTTTTCGGTGGCGGGGTACTCCCCGCTCCCTCCCTCCCTCCCTCCCTCCC
TCGCGCAATGCTTCACCTCGACCGTTCACCTTCTGTCTCCCCCCGCCCGT
CCCGCCGTCGGAACTCGCGTACATCCTTCTCTGCGACAGCATGCTTCTCA
GCTCCCAAGAGATGGGGCAAGATATGGGGCAAGAGACGGAGCAAGAGATG
CCGCTTACCGCGGAAAGCTCCTTCCAGCCCCCCGCCGATGCTTCCCCCAG
CGTGTCCATCTCGACTCTCGACTCGCCGGACTCCGTTCCCTTGGCTCCGG
TGGCCCATCGTGCCGGGTCCCCCCTCAGTCAGCGAGTCGTCCTCGGCCTG
CTGGCGGTGGTGGTGGCACTCCTGGGGACGAACGCCTACTATTTTAATCA
GGCTCATGCTTGGAAGGTACATCGACTTGACTGCTGGTGCTACGAAGGAA
TACATACTTCACGATACACGATACACGATACACGATGCCGGCATTGTTGC
TGCTCGCGGCGCAAGTTATGTATCGCCACGCGCGGGAGGCGTGGTCCTTC
AGAAGGGCGCGATCGGGCTAATTTTTGGGCGGTCATCGTGGGGATGCCGA
CAAGACCCGCAGTTTTTTCCTCCGGGGTTGTTTTTTGTCGGCCCGCGCTG
AGAGACTCTTCTTTTGAGACAATCTACGGTGTGCGTAGCTCACGTCGAAG
TAGGGATCAGCTTCAGCCATCTGCGAGACCACGTGGAAGCAATTTTGCGT
CACGTACGGGTCATACGAATTGAGACAGGGCACTGTAGGGGCAGCGCCCC
CCCTGTGCTTGCTGCTGAGCAGATTTTATCGTTCTGCTACAGCTGGGGTG
CAGCCGGCATGACGGCGCCTCTTGAAGGATTGTAGCAGTTGCAGCACCAG
CAGCATAAGGTGCGCGAGTACTGGGCATCTCAATGATGTTGGCAAGAAAC
AGCAACGGGGCCATCGAAAACGTGAGGGGCTGGATGTTCTATTTCTTGCC
ATGGCAAACCCTCCGGGTCCTTCTTACGCGCGCACGCTTGACCGGCAGGC
CGAAAGCTCCGAGCTGCAAGCAAGGGTGGCCAAGCTGGAGAAAGATAGCG
CTACCCCCAAGATAGACGTGGACCCTCTCGCCACCCCACCCTCCTGTCCC
GGGAGCCAGCTCATCGACACGTGCTGGTTCAAGGTTAGTCTTGTGTTTTT
GATGGCCACGTTTGTACCTCAGCTGTGCTGCCGAAGATACAGATGCATGC
GGCGGTACCGCATGCGCGTGTACAGACAATGGTTTAGGGTCTTGCGTTGC
GTCTCGTTGGGAATGCCTGAATTTTCTCCTGGCGCGGAGAGCGATTGATG
ATTATGTCAGCCGTGAGTTCTAGTGTTCGCTTCACCTTGTTTGGCGGATC
TGATCGCTTTCCCTCGAGAAAGACGAGATGCTTATTGAGACACCGAACTT
CCATGCGTCGCACCCTTTCATCAGAAAATTAGGAAAAGTGCGCGATGCGT
TGTCGACGCCAACCGATTCCGCCGCACACTCTTCACCCGTTCGAGGCGCT
CTTTGCCTGGCTCTCACTCAACTCCATTCGCTGCCGCTGCCGCTGCTGCT
GCTGCTACTACTGCTCCTGCTGCTGCTGCTGCAAGGTGGGGTGGGGTGAC
TGCACCAAAGAAGTGATTGAGGACCCCATCAAGCCTGTGGAGGACGCTTT
CCGCCTCGCCTGGGACTCCACGACCGAGGTCGTTGGCTTTGTGGTGGACA
CCATCGCGAGCGACTTCCGCGAGGTGAAAAGGGCGACGTAAATGAGTGGC
CGCTGGCCCTTGCCCACAAGAAGGCACCGACCGTTTGGTCACGAGGGCAA
GCTCTATCGATGTCGGATCCGATTGTCCCCGGCACCAAGATGAAGATATG
TGTCGATGTTTTCGGACTACGTCGCGAATATTCAATCCCACTCGAGCCAG
GGGCACTCTCTCCGAATCTCCTTAGGCAGAAGGTTCTAAGCAAGACACTG
TGAAGGGTTCACCTGGCTGAGCAGCTCGCTGTCTTGTGACACGCGGATCA
AAAGAATCCTTCATCTCGATGCAGGCCTGCCAGAACCGGAAGACTTGAGA
CTAGTTTTCGACGCTTTGTCGTGAGTGCCAGCGCCAGGAGCTTTTTTCGT
CGTGCTTTGGCGTCCCAAAATGAGGGTTCCCCGCGGACTGATGGGAGGGG
TACACGGGGCGTATTCTTGCATCGCCTTTGGGAGGGCAAGAATAGGTCAT
ACAGTCGATGCTCGCTTTTTTCGACACCTGCTGAAGAACGGTTGGCGTCA
CATCAGTCGTACCAGCTGATTATCTCGCATGATGGCACTCGATTATCAAA
CTGCTTACATCTATTTGCCATCCTGTGCGGTCGGCAATCGTGCCCAACGT
CCGGCTCTTCTTCTCCCGCGTGCGTCCCCCGGATCTCTCGCTGCTTTCTC
TTTCCCATTCCCCGCAGGTGGGCAAGGCGATTCACGAGTTAGGCAGCTTC
CTCTTCGAGCTGTGATTTCGATTCTTGTTTTACGCTTGGGGAACTTCTCG
GTTCGGGTTGTCGACTCGGTTGCGCGAAAATATCCTGTCCTCGGCGCGCA
TTTGTGCAAAAGTTGTATCCACAGTTTACATCAAGTTTAGCACCAAACAT
GACTGGATGACCCTAAGGCCCATGCTGTAATTCTTGTGTTTTTTTGTTGC
TGCCCTCTGCGTCCGGCGCAGAGGTTGAGCATCCGTCCCAGGTTTTTCAC
ACCCACATCCGAACGGAAGGCCCGTTGCACTGGCTTGTTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1168:16110..20149+

>mRNA_H-canaliculatus_F_contig1168.1486.1 ID=mRNA_H-canaliculatus_F_contig1168.1486.1|Name=mRNA_H-canaliculatus_F_contig1168.1486.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1464bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1168:16110..20149+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGAGGGACCAAGCGTCGAGGGAGCAGCTGGCGAACCGCCGTCCGGC
CGCGGACAGCTGGATCCCTGCGGAAGCTTCGCCACAGCCCCAGCTTGATG
ACTCCTTTCATCCGGAAACCTTCGTCAACATGGAGAGGGACCAAGCGTCG
AGGGAGCAGCTGGCGAACCGCCGTCCGGCCGCGGACAGCTGGATCCCTGC
GGAAGCTTCGCCACAGCCCCAGCTTGATGACTCCTTTCATCCGGAAACCT
TCGTCAACATGGGGCAAGATATGGGGCAAGAGACGGAGCAAGAGATGCCG
CTTACCGCGGAAAGCTCCTTCCAGCCCCCCGCCGATGCTTCCCCCAGCGT
GTCCATCTCGACTCTCGACTCGCCGGACTCCGTTCCCTTGGCTCCGGTGG
CCCATCGTGCCGGGTCCCCCCTCAGTCAGCGAGTCGTCCTCGGCCTGCTG
GCGGTGGTGGTGGCACTCCTGGGGACGAACGCCTACTATTTTAATCAGGC
TCATGCTTGGAAGGTACATCGACTTGACTGCTGGTGCTACGAAGGAATAC
ATACTTCACGATACACGATACACGATACACGATGCCGGCATTATGGGGCA
AGATATGGGGCAAGAGACGGAGCAAGAGATGCCGCTTACCGCGGAAAGCT
CCTTCCAGCCCCCCGCCGATGCTTCCCCCAGCGTGTCCATCTCGACTCTC
GACTCGCCGGACTCCGTTCCCTTGGCTCCGGTGGCCCATCGTGCCGGGTC
CCCCCTCAGTCAGCGAGTCGTCCTCGGCCTGCTGGCGGTGGTGGTGGCAC
TCCTGGGGACGAACGCCTACTATTTTAATCAGGCTCATGCTTGGAAGGTA
CATCGACTTGACTGCTGGTGCTACGAAGGAATACATACTTCACGATACAC
GATACACGATACACGATGCCGGCATTCAAGGGTGGCCAAGCTGGAGAAAG
ATAGCGCTACCCCCAAGATAGACGTGGACCCTCTCGCCACCCCACCCTCC
TGTCCCGGGAGCCAGCTCATCGACACGTGCTGGTTCAAGCAAGGGTGGCC
AAGCTGGAGAAAGATAGCGCTACCCCCAAGATAGACGTGGACCCTCTCGC
CACCCCACCCTCCTGTCCCGGGAGCCAGCTCATCGACACGTGCTGGTTCA
AGGTGGGGTGGGGTGACTGCACCAAAGAAGTGATTGAGGACCCCATCAAG
CCTGTGGAGGACGCTTTCCGCCTCGCCTGGGACTCCACGACCGAGGTCGT
TGGCTTTGTGGTGGACACCATCGCGAGCGACTTCCGCGAGGTGAAAAGGG
CGACGTAAGTGGGGTGGGGTGACTGCACCAAAGAAGTGATTGAGGACCCC
ATCAAGCCTGTGGAGGACGCTTTCCGCCTCGCCTGGGACTCCACGACCGA
GGTCGTTGGCTTTGTGGTGGACACCATCGCGAGCGACTTCCGCGAGGTGA
AAAGGGCGACGTAA
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