mRNA_H-canaliculatus_F_contig11673.1483.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11673.1483.1
Unique NamemRNA_H-canaliculatus_F_contig11673.1483.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11673.1483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11673contigH-canaliculatus_F_contig11673:3420..4019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size602
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.7759647-UTR-H-canaliculatus_F_contig11673:3419..36321622928859.7759647-UTR-H-canaliculatus_F_contig11673:3419..3632Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11673 3420..3632 +
1696845592.168176-UTR-H-canaliculatus_F_contig11673:3419..36321696845592.168176-UTR-H-canaliculatus_F_contig11673:3419..3632Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11673 3420..3632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.793434-CDS-H-canaliculatus_F_contig11673:3632..40191622928859.793434-CDS-H-canaliculatus_F_contig11673:3632..4019Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11673 3633..4019 +
1696845592.178229-CDS-H-canaliculatus_F_contig11673:3632..40191696845592.178229-CDS-H-canaliculatus_F_contig11673:3632..4019Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11673 3633..4019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11673.1483.1prot_H-canaliculatus_F_contig11673.1483.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11673 3633..4019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11673.1483.1

>prot_H-canaliculatus_F_contig11673.1483.1 ID=prot_H-canaliculatus_F_contig11673.1483.1|Name=mRNA_H-canaliculatus_F_contig11673.1483.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=129bp
MSETKAELIQRLEEKEREKKEMQERNREAKKSQQDAEARVIALTEELSRE
RAGGGRPAESPGGGETAGRETPGFHAGASGTYPRGGGYGNGGQVQQDQWR
CNRPEQQPRRGNDSHQYIYHHSPQQQQQQ
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mRNA from alignment at H-canaliculatus_F_contig11673:3420..4019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11673.1483.1 ID=mRNA_H-canaliculatus_F_contig11673.1483.1|Name=mRNA_H-canaliculatus_F_contig11673.1483.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11673:3420..4019+ (Hapterophycus canaliculatus Oshoro5f female)
CGGAGCCCCCCCTCTACGAGGCGACGTGCCCTCTGTCTCTCACTCGAATT
TAATGAAGAATCGGGCGACCACGAAGACCACGAAGACAATGGACACGTAG
ATATACATATTCCACAAGTTCTGCAGGCGTGCTAACCGAGTACACGCTAC
CCGGACCTACTAACACGATTAATCGTGAGAGGCTTGCAAGCCCCGGGAGG
ACACAGCAGCAGAATGAGCGAGACAAAGGCGGAGTTGATACAACGACTAG
AAGAAAAGGAGAGAGAAAAGAAGGAGATGCAGGAACGAAATAGAGAGGCG
AAGAAAAGCCAGCAGGACGCGGAAGCGAGAGTGATAGCACTGACGGAGGA
GCTGTCGCGAGAGAGGGCTGGCGGCGGGCGCCCAGCAGAATCGCCCGGCG
GGGGCGAGACTGCTGGCAGGGAGACACCTGGCTTCCATGCTGGAGCGAGT
GGCACTTATCCGAGAGGTGGGGGCTACGGCAACGGCGGTCAGGTGCAGCA
GGATCAGTGGCGGTGTAACCGACCTGAACAGCAGCCGCGGCGGGGCAATG
ACAGTCACCAATACATCTATCACCATTCCCCGCAGCAGCAGCAGCAGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11673:3420..4019+

>mRNA_H-canaliculatus_F_contig11673.1483.1 ID=mRNA_H-canaliculatus_F_contig11673.1483.1|Name=mRNA_H-canaliculatus_F_contig11673.1483.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=774bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11673:3420..4019+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCGAGACAAAGGCGGAGTTGATACAACGACTAGAAGAAAAGGAGAG
AGAAAAGAAGGAGATGCAGGAACGAAATAGAGAGGCGAAGAAAAGCCAGC
AGGACGCGGAAGCGAGAGTGATAGCACTGACGGAGGAGCTGTCGCGAGAG
AGGGCTGGCGGCGGGCGCCCAGCAGAATCGCCCGGCGGGGGCGAGACTGC
TGGCAGGGAGACACCTGGCTTCCATGCTGGAGCGAGTGGCACTTATCCGA
GAGGTGGGGGCTACGGCAACGGCGGTCAGGTGCAGCAGGATCAGTGGCGG
TGTAACCGACCTGAACAGCAGCCGCGGCGGGGCAATGACAGTCACCAATA
CATCTATCACCATTCCCCGCAGCAGCAGCAGCAGCAGATGAGCGAGACAA
AGGCGGAGTTGATACAACGACTAGAAGAAAAGGAGAGAGAAAAGAAGGAG
ATGCAGGAACGAAATAGAGAGGCGAAGAAAAGCCAGCAGGACGCGGAAGC
GAGAGTGATAGCACTGACGGAGGAGCTGTCGCGAGAGAGGGCTGGCGGCG
GGCGCCCAGCAGAATCGCCCGGCGGGGGCGAGACTGCTGGCAGGGAGACA
CCTGGCTTCCATGCTGGAGCGAGTGGCACTTATCCGAGAGGTGGGGGCTA
CGGCAACGGCGGTCAGGTGCAGCAGGATCAGTGGCGGTGTAACCGACCTG
AACAGCAGCCGCGGCGGGGCAATGACAGTCACCAATACATCTATCACCAT
TCCCCGCAGCAGCAGCAGCAGCAG
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