mRNA_H-canaliculatus_F_contig11672.1482.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11672.1482.1
Unique NamemRNA_H-canaliculatus_F_contig11672.1482.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11672.1482.1 vs. uniprot
Match: A0A6H5LCE2_9PHAE (HTH TFE/IIEalpha-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCE2_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 1.130e-77
Identity = 259/368 (70.38%), Postives = 267/368 (72.55%), Query Frame = 1 
Query:   10 VPRESIFELVHSLRDTVVPSNLPSQLRQRGMGGQQRGDLSSAHARFQDDFHHRGRAADKAATERGEAAGGGGRSASRPVQVLYTKNWRGEEVVVEIEQSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------ALPTFLKGSVISGNADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHARRLGVAAVTSVAERDEMKKRLRPWTERMKQVWRRQQSEAXXXXXXXXXXENGARSGTNGREDAWWEVEDDADGVXXXXXXXXXKGGEAGAQNRXXERDPGAGATELLGLAAGVGAGARFRVGVRIVPIEALTVEDAARMSAEEYTRFYNLVVGE 1095
            VPRESIFELVHSLRDTVVPSNLPSQLRQRGMGGQQRGD+SSAHARFQDDFHHRGRAADKAA ERG A   GGR++SRPVQVLYTKNWRGEEVVVEIEQS XXXXXXXXXX   XXXXXXXXXXXXX                 XXXXXXX      ALPTFLKGS ISGN +    XXXXXXXXXXXXXXXXXXXXXXXX             ARRLGVAAVTSVAERDEMKKRLRPWTERMKQVWRRQQ   XXXXXXXXXX                         XXXXXXXX KG     Q R   R        LLGL+AGVGAG RFRVGVR VPIEALT ED A+MSAE+YTRFYN+VVGE
Sbjct:  206 VPRESIFELVHSLRDTVVPSNLPSQLRQRGMGGQQRGDVSSAHARFQDDFHHRGRAADKAAAERGAA---GGRASSRPVQVLYTKNWRGEEVVVEIEQSXXXXXXXXXXXAEGXXXXXXXXXXXXXGLLLPSRAALKRKAADAXXXXXXXXXRAKKALPTFLKGSAISGNYNNTADXXXXXXXXXXXXXXXXXXXXXXXX-------------ARRLGVAAVTSVAERDEMKKRLRPWTERMKQVWRRQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXRKGAP---QARTSAR--------LLGLSAGVGAGQRFRVGVRFVPIEALTEEDIAKMSAEDYTRFYNVVVGE 539
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BLAST of mRNA_H-canaliculatus_F_contig11672.1482.1 vs. uniprot
Match: D8LCF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF2_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 2.620e-74
Identity = 269/365 (73.70%), Postives = 276/365 (75.62%), Query Frame = 1 
Query:    4 RDVPRESIFELVHSLRDTVVPSNLPSQLRQRGMGGQQRGDLSSAHARFQDDFHHRGRAADKAATERGEAAGGGGRSASRPVQVLYTKNWRGEEVVVEIEQSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALPTFLKGSVISGNADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHARRLGVAAVTSVAERDEMKKRLRPWTERMKQVWRRQQSEAXXXXXXXXXXENGARSGTNGREDAWWEVEDDADGVXXXXXXXXXKGGEAGAQNRXXERDPGAGATELLGLAAGVGAGARFRVGVRIVPIEALTVEDAARMSAEEYTRFYNLVVGER 1098
            R+VPRESIFELVHSLRD VVPSNLPSQLRQRGMGGQQRGD+SSAHARFQDDFHHRGRAADKAA ERG A   GGR++SRPVQVLYTKNWRGEEVVVEIEQSE XXXXX         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       HARRLGVAAVTSVAERDEMKKRLRPWTERMKQVWRRQQS  XXXXXXXXXX                         XXXXXXXX KG     Q R   R        LLGL+AGVGAG RFRVGVR VPIEALT ED A+MSAE+YTRFYN VVGER
Sbjct:    2 RNVPRESIFELVHSLRDIVVPSNLPSQLRQRGMGGQQRGDVSSAHARFQDDFHHRGRAADKAAAERGAA---GGRASSRPVQVLYTKNWRGEEVVVEIEQSEDXXXXXEDWDAEGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQ-----HARRLGVAAVTSVAERDEMKKRLRPWTERMKQVWRRQQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------XXXXXXXXRKGAP---QARSSAR--------LLGLSAGVGAGQRFRVGVRFVPIEALTEEDIAKMSAEDYTRFYNAVVGER 340
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BLAST of mRNA_H-canaliculatus_F_contig11672.1482.1 vs. uniprot
Match: A0A836CC40_9STRA (TFIIE alpha subunit-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC40_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.740e-5
Identity = 42/88 (47.73%), Postives = 51/88 (57.95%), Query Frame = 1 
Query:   46 LRDTVVPSNLPSQLRQRGMGGQQRGDLSSAH-ARFQDDFH--HRGRAADKAATERGEAAGGGGRSASRPVQVLYTKNWRGEEVVVEIE 300
            L D  VPSNLPS+LR RG+GG  RG   ++  ARF+DD    H G AA       G   G G   ++R V +LY +N  G EVVVEIE
Sbjct:  281 LHDKPVPSNLPSELRARGVGGGARGSHGASKLARFRDDRFSLHAGYAA-------GTKGGDGAHGSNRAVDLLYARNAAGYEVVVEIE 361
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11672.1482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LCE2_9PHAE1.130e-7770.38HTH TFE/IIEalpha-type domain-containing protein n=... [more]
D8LCF2_ECTSI2.620e-7473.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CC40_9STRA1.740e-547.73TFIIE alpha subunit-domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11672contigH-canaliculatus_F_contig11672:164..2920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_004770.1
Hectar predicted targeting categoryother localisation
Exons2
Model size2276
Cds size1014
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11672.1482.1prot_H-canaliculatus_F_contig11672.1482.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11672 263..1757 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.6677697-UTR-H-canaliculatus_F_contig11672:163..2621622928859.6677697-UTR-H-canaliculatus_F_contig11672:163..262Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11672 164..262 +
1696845592.1316974-UTR-H-canaliculatus_F_contig11672:163..2621696845592.1316974-UTR-H-canaliculatus_F_contig11672:163..262Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11672 164..262 +
1622928859.7210233-UTR-H-canaliculatus_F_contig11672:1757..29201622928859.7210233-UTR-H-canaliculatus_F_contig11672:1757..2920Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11672 1758..2920 +
1696845592.1596823-UTR-H-canaliculatus_F_contig11672:1757..29201696845592.1596823-UTR-H-canaliculatus_F_contig11672:1757..2920Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11672 1758..2920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.6863692-CDS-H-canaliculatus_F_contig11672:262..3991622928859.6863692-CDS-H-canaliculatus_F_contig11672:262..399Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11672 263..399 +
1696845592.1431217-CDS-H-canaliculatus_F_contig11672:262..3991696845592.1431217-CDS-H-canaliculatus_F_contig11672:262..399Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11672 263..399 +
1622928859.7034285-CDS-H-canaliculatus_F_contig11672:880..17571622928859.7034285-CDS-H-canaliculatus_F_contig11672:880..1757Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11672 881..1757 +
1696845592.1514137-CDS-H-canaliculatus_F_contig11672:880..17571696845592.1514137-CDS-H-canaliculatus_F_contig11672:880..1757Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11672 881..1757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11672.1482.1

>prot_H-canaliculatus_F_contig11672.1482.1 ID=prot_H-canaliculatus_F_contig11672.1482.1|Name=mRNA_H-canaliculatus_F_contig11672.1482.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=338bp
MGGQQRGDLSSAHARFQDDFHHRGRAADKAATERGEAAGGGGRSASRPVQ
VLYTKNWRGEEVVVEIEQSEDDEDDDDDDDGEEGGGGGEASALLPSRAAL
KRKAADAAAKEEEAAKRAKKALPTFLKGSVISGNADGGGGDSDGGGGDED
EDDDDHSSGGSSTSKRAQAAAAAAAGHARRLGVAAVTSVAERDEMKKRLR
PWTERMKQVWRRQQSEARREEDDTAAAENGARSGTNGREDAWWEVEDDAD
GVGNGGGGGGFKGGEAGAQNRRRERDPGAGATELLGLAAGVGAGARFRVG
VRIVPIEALTVEDAARMSAEEYTRFYNLVVGERTGSG*
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mRNA from alignment at H-canaliculatus_F_contig11672:164..2920+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11672.1482.1 ID=mRNA_H-canaliculatus_F_contig11672.1482.1|Name=mRNA_H-canaliculatus_F_contig11672.1482.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2757bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11672:164..2920+ (Hapterophycus canaliculatus Oshoro5f female)
AAAAGAGACGTCCCGCGAGAGAGCATCTTCGAGCTCGTGCACTCGCTCCG
AGACACCGTGGTGCCCAGCAACCTCCCGAGCCAGCTGCGGCAGAGGGGGA
TGGGGGGCCAGCAGCGCGGAGACCTGTCCAGCGCGCACGCGCGGTTCCAG
GATGACTTCCACCACCGAGGACGGGCGGCCGACAAAGCCGCGACGGAGAG
GGGCGAGGCGGCGGGCGGCGGCGGGCGGAGTGCGTCGTCCAGGTGCTGCC
GTTGTTGTGGCTGCGGTCGTTGGCGGCGGTGGCGGCGGCAGCGGCAGCGC
TGCTGTCTTTGTTGGGGTTGGGGTTGCTTCTGGCGTTGTCGATGCTGCTA
CCGTTGCGAATGCTGGCGTTGCTGTTGCTGTTGCCCCACGGGCAGGTCTC
GAGCCGGTCCTTTTGAGGAGCCAGCCCGTCTCCATCCGCGGTTTCTTTTG
CTCCATTTCTTCGCGTCAGGACTGCGGGTGATGAGCCGACGTGCTGTCGT
GGCGTAGCAGGCAGACGCTCAAAGCGCCACCCGCGATACGAAGCGATCGC
GAGTGCGTGCGAATTATGTTCGATCTACATATTTGGAACGTGTGCGCACT
CGCCTTACGGGTACCTCGAGAATCCGAACCAAGTTCGTCCAGATACTCGA
AACGGAACCCAAAACGAGCGAACCGAACCGCTTCGCCTTTGTTGGCGTCC
GTCCCGCACGGGACGAGCAGGCCTGTGCAGGTGCTCTACACCAAGAACTG
GCGAGGGGAGGAAGTGGTGGTGGAGATCGAGCAGAGCGAGGACGACGAAG
ACGACGACGACGACGACGACGGGGAAGAGGGAGGCGGGGGCGGGGAGGCC
TCGGCGCTGCTGCCGTCCCGCGCCGCGCTGAAGCGGAAGGCCGCAGACGC
TGCCGCGAAGGAGGAAGAGGCCGCCAAGCGCGCCAAGAAAGCGCTACCGA
CCTTTCTCAAGGGCAGCGTTATCTCCGGCAACGCCGACGGTGGCGGCGGG
GATAGCGACGGGGGGGGCGGCGATGAAGATGAAGATGACGACGACCATTC
GTCCGGCGGGAGCAGTACAAGCAAGCGCGCTCAGGCGGCGGCGGCGGCGG
CGGCGGGGCACGCTCGAAGGCTCGGGGTGGCGGCGGTGACGAGCGTGGCC
GAGCGCGACGAGATGAAGAAGAGGCTGCGGCCGTGGACGGAGAGGATGAA
GCAGGTCTGGCGGCGGCAGCAGTCGGAGGCGCGGCGGGAGGAGGACGACA
CGGCCGCCGCCGAGAACGGTGCCCGCAGCGGCACCAACGGGCGCGAAGAC
GCGTGGTGGGAAGTCGAAGACGATGCCGACGGGGTAGGGAACGGCGGCGG
CGGCGGCGGGTTCAAGGGCGGGGAAGCCGGGGCGCAAAATCGACGGCGAG
AGCGGGACCCAGGAGCGGGGGCAACGGAGCTGCTCGGGCTGGCCGCGGGG
GTGGGGGCCGGGGCGAGGTTCAGGGTCGGCGTGCGGATCGTCCCGATAGA
GGCGCTGACGGTCGAGGACGCCGCGAGGATGTCCGCGGAGGAGTACACGA
GGTTCTACAACCTAGTGGTCGGAGAGCGAACGGGGTCGGGTTGAGCCGCC
CCGCCCGGAGTCCGATTTTTTGCGGGTGTTCGGACCACGCGTGTGATTTT
TTTTGAGTCGCTCGTTGTCGTGAGTGTCGGTGTCGATGTCGGTGTCGGTA
GTGTTGGTGTTGGTGTTGGTGTAGCGGTTGGTTTTGTGCGGCGTTTGCGC
TTGCTGTGTGGGTGTGGGTGTTGGTGTGCGTGTGCGTGTGCGTTAGCGCG
TGTTGCTGTGTGTGTCCTATGCCTGTGTCTTGCGGCTGGTCAGGGTGGCG
GTGGCGAAGAGATAGGAGGATGGTTTCCTGTTCCCAACGCGTCCTGTCGA
ATAATGTCGTGTCGGTGCGCCTGTCGGAAGGGCTTTACTCGAGCGGGTGT
TCCAACACTCACCCGTTTAGTGGCGCGTGCTACGTATGACGGGAAGAAAT
CGGTTTCCAGGTTGTGAGAGGTGTGTTGCTAGAATTCGGGGGGGGGGGCA
AAGGTAGTGCAGAAATGTGTTTTTGGTGTGAGACACTCGCAGGCCTTCAG
GAAAGGACGGTGGAACACGAGAAACAACACGAACCGATGGGCAGGACGAG
AGAAAGAGAGAAAAGAGAGAAGAGAAAAGAGCGTCCGCGATTGTCTCTGT
TCTCCAGCCGCCTGTTCTCATTCCGGGACTCTCGCCCACTTGGAGTGGTG
GCGAGTGTACGCTCGGATGAACAAACGAGTTCGTGTCTGTTTCGTGTGTG
CTGTGTGTGCTATGTGTGCGCGTCCGCACGTCATTTTTGTGTTCCTTGGT
GTCAAGGGCAAGTCCCAGAGGGTGTTAGCCCGCAGCTGTGAGCGTACTTC
CCAGCTCGAAAGGGGTACCAGGAGGGGTCTGTTGTCGATCGTCCCGGCCT
TGGATCGCGTGTCCACGGTCGCCGTTCGTCGTCTGGCACCGTGCTTGTTT
GGTGCCCTAGCTTCGGGTTCGCGGCGACTGGAGGGGATTTCAAGAAAAAT
GAAGAAAACGGCAACGGAGCAGAGGATGACTGTGGTTGGAGCTTGGGAAA
ACCGGACGAGAGAGATAACAAGGCCCTTGCCTGGAGGGTGCGCGTGTGAT
GCTGTGCCCGTGTGATCCGTTTGGTGGTTGTACGTGCACCTGTCTCAACG
TCTTGGCGTCCCCTCCCTCTCCTCTCCACGATTCATTCTAGTCGTACGTA
CGTCACT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11672:164..2920+

>mRNA_H-canaliculatus_F_contig11672.1482.1 ID=mRNA_H-canaliculatus_F_contig11672.1482.1|Name=mRNA_H-canaliculatus_F_contig11672.1482.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2028bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11672:164..2920+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGGGCCAGCAGCGCGGAGACCTGTCCAGCGCGCACGCGCGGTTCCA
GGATGACTTCCACCACCGAGGACGGGCGGCCGACAAAGCCGCGACGGAGA
GGGGCGAGGCGGCGGGCGGCGGCGGGCGGAGTGCGTCATGGGGGGCCAGC
AGCGCGGAGACCTGTCCAGCGCGCACGCGCGGTTCCAGGATGACTTCCAC
CACCGAGGACGGGCGGCCGACAAAGCCGCGACGGAGAGGGGCGAGGCGGC
GGGCGGCGGCGGGCGGAGTGCGTCCAGGCCTGTGCAGGTGCTCTACACCA
AGAACTGGCGAGGGGAGGAAGTGGTGGTGGAGATCGAGCAGAGCGAGGAC
GACGAAGACGACGACGACGACGACGACGGGGAAGAGGGAGGCGGGGGCGG
GGAGGCCTCGGCGCTGCTGCCGTCCCGCGCCGCGCTGAAGCGGAAGGCCG
CAGACGCTGCCGCGAAGGAGGAAGAGGCCGCCAAGCGCGCCAAGAAAGCG
CTACCGACCTTTCTCAAGGGCAGCGTTATCTCCGGCAACGCCGACGGTGG
CGGCGGGGATAGCGACGGGGGGGGCGGCGATGAAGATGAAGATGACGACG
ACCATTCGTCCGGCGGGAGCAGTACAAGCAAGCGCGCTCAGGCGGCGGCG
GCGGCGGCGGCGGGGCACGCTCGAAGGCTCGGGGTGGCGGCGGTGACGAG
CGTGGCCGAGCGCGACGAGATGAAGAAGAGGCTGCGGCCGTGGACGGAGA
GGATGAAGCAGGTCTGGCGGCGGCAGCAGTCGGAGGCGCGGCGGGAGGAG
GACGACACGGCCGCCGCCGAGAACGGTGCCCGCAGCGGCACCAACGGGCG
CGAAGACGCGTGGTGGGAAGTCGAAGACGATGCCGACGGGGTAGGGAACG
GCGGCGGCGGCGGCGGGTTCAAGGGCGGGGAAGCCGGGGCGCAAAATCGA
CGGCGAGAGCGGGACCCAGGAGCGGGGGCAACGGAGCTGCTCGGGCTGGC
CGCGGGGGTGGGGGCCGGGGCGAGGTTCAGGGTCGGCGTGCGGATCGTCC
CGATAGAGGCGCTGACGGTCGAGGACGCCGCGAGGATGTCCGCGGAGGAG
TACACGAGGTTCTACAACCTAGTGGTCGGAGAGCGAACGGGGTCGGGTTG
ACAGGCCTGTGCAGGTGCTCTACACCAAGAACTGGCGAGGGGAGGAAGTG
GTGGTGGAGATCGAGCAGAGCGAGGACGACGAAGACGACGACGACGACGA
CGACGGGGAAGAGGGAGGCGGGGGCGGGGAGGCCTCGGCGCTGCTGCCGT
CCCGCGCCGCGCTGAAGCGGAAGGCCGCAGACGCTGCCGCGAAGGAGGAA
GAGGCCGCCAAGCGCGCCAAGAAAGCGCTACCGACCTTTCTCAAGGGCAG
CGTTATCTCCGGCAACGCCGACGGTGGCGGCGGGGATAGCGACGGGGGGG
GCGGCGATGAAGATGAAGATGACGACGACCATTCGTCCGGCGGGAGCAGT
ACAAGCAAGCGCGCTCAGGCGGCGGCGGCGGCGGCGGCGGGGCACGCTCG
AAGGCTCGGGGTGGCGGCGGTGACGAGCGTGGCCGAGCGCGACGAGATGA
AGAAGAGGCTGCGGCCGTGGACGGAGAGGATGAAGCAGGTCTGGCGGCGG
CAGCAGTCGGAGGCGCGGCGGGAGGAGGACGACACGGCCGCCGCCGAGAA
CGGTGCCCGCAGCGGCACCAACGGGCGCGAAGACGCGTGGTGGGAAGTCG
AAGACGATGCCGACGGGGTAGGGAACGGCGGCGGCGGCGGCGGGTTCAAG
GGCGGGGAAGCCGGGGCGCAAAATCGACGGCGAGAGCGGGACCCAGGAGC
GGGGGCAACGGAGCTGCTCGGGCTGGCCGCGGGGGTGGGGGCCGGGGCGA
GGTTCAGGGTCGGCGTGCGGATCGTCCCGATAGAGGCGCTGACGGTCGAG
GACGCCGCGAGGATGTCCGCGGAGGAGTACACGAGGTTCTACAACCTAGT
GGTCGGAGAGCGAACGGGGTCGGGTTGA
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