mRNA_H-canaliculatus_F_contig11669.1477.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11669.1477.1
Unique NamemRNA_H-canaliculatus_F_contig11669.1477.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11669.1477.1 vs. uniprot
Match: A0A6H5K7K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K3_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 5.400e-19
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 GPDSNPTHFTDKIEINDFPQQARWKITQKSTVGEIVEMTGVNIITKG 141
            GPDS PTHFTDKI INDFPQQARWKITQKSTV E+ EMTGV IITKG
Sbjct: 1111 GPDSEPTHFTDKIVINDFPQQARWKITQKSTVNEVYEMTGVAIITKG 1157
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BLAST of mRNA_H-canaliculatus_F_contig11669.1477.1 vs. uniprot
Match: D8LJ88_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ88_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 5.400e-19
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 GPDSNPTHFTDKIEINDFPQQARWKITQKSTVGEIVEMTGVNIITKG 141
            GPDS PTHFTDKI INDFPQQARWKITQKSTV E+ EMTGV IITKG
Sbjct: 1233 GPDSEPTHFTDKIVINDFPQQARWKITQKSTVNEVYEMTGVAIITKG 1279
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BLAST of mRNA_H-canaliculatus_F_contig11669.1477.1 vs. uniprot
Match: A0A251V0Z9_HELAN (Putative P-loop containing nucleoside triphosphate hydrolases superfamily protein n=2 Tax=Heliantheae alliance TaxID=911341 RepID=A0A251V0Z9_HELAN)

HSP 1 Score: 61.6 bits (148), Expect = 1.220e-9
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    7 DSNPTHFTDKIEINDFPQQARWKITQKSTVGEIVEMTGVNIITKGE 144
            DS P H+  ++EINDFPQ ARWK+T K T+G I E TG  I T+G+
Sbjct:  998 DSLPEHYEAELEINDFPQNARWKVTHKETLGPIAEWTGAAITTRGQ 1043
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BLAST of mRNA_H-canaliculatus_F_contig11669.1477.1 vs. uniprot
Match: A0A6S7NFS6_LACSI (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A6S7NFS6_LACSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.270e-9
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    7 DSNPTHFTDKIEINDFPQQARWKITQKSTVGEIVEMTGVNIITKGE 144
            DS P H+  ++EINDFPQ ARWK+T K T+G I E TG  I T+G+
Sbjct:  844 DSLPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQ 889
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BLAST of mRNA_H-canaliculatus_F_contig11669.1477.1 vs. uniprot
Match: UPI001CB91CAD (DEAD-box ATP-dependent RNA helicase 42 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB91CAD)

HSP 1 Score: 60.8 bits (146), Expect = 2.270e-9
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    7 DSNPTHFTDKIEINDFPQQARWKITQKSTVGEIVEMTGVNIITKGE 144
            DS P H+  ++EINDFPQ ARWK+T K T+G I E TG  I T+G+
Sbjct:  977 DSLPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQ 1022
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BLAST of mRNA_H-canaliculatus_F_contig11669.1477.1 vs. uniprot
Match: A0A8K1FLP6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FLP6_PYTOL)

HSP 1 Score: 60.8 bits (146), Expect = 2.270e-9
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   10 SNPTHFTDKIEINDFPQQARWKITQKSTVGEIVEMTGVNIITKGECPP 153
            S+  HF +++EIND+PQQARWK+TQK     + E+TG  +IT+G   P
Sbjct: 1006 SDENHFEEELEINDYPQQARWKVTQKEATERVAELTGAAVITRGSFVP 1053
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BLAST of mRNA_H-canaliculatus_F_contig11669.1477.1 vs. uniprot
Match: A0A124SAZ3_CYNCS (DNA/RNA helicase, DEAD/DEAH box type, N-terminal n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A124SAZ3_CYNCS)

HSP 1 Score: 60.8 bits (146), Expect = 2.270e-9
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    7 DSNPTHFTDKIEINDFPQQARWKITQKSTVGEIVEMTGVNIITKGE 144
            DS P H+  ++EINDFPQ ARWK+T K T+G I E TG  I T+G+
Sbjct: 1004 DSLPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQ 1049
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BLAST of mRNA_H-canaliculatus_F_contig11669.1477.1 vs. uniprot
Match: A0A2D4BFR0_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFR0_PYTIN)

HSP 1 Score: 60.8 bits (146), Expect = 2.280e-9
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 GPDSNPTHFTDKIEINDFPQQARWKITQKSTVGEIVEMTGVNIITKGECPP 153
            G D +  HF +++EIND+PQQARWK+TQ+     + E+TGV IIT+G   P
Sbjct: 2232 GDDGDEGHFYEELEINDYPQQARWKVTQRDASERVSELTGVAIITRGSFVP 2282
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BLAST of mRNA_H-canaliculatus_F_contig11669.1477.1 vs. uniprot
Match: A0A2P5ACL5_PARAD (KH domain containing protein n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5ACL5_PARAD)

HSP 1 Score: 60.1 bits (144), Expect = 2.820e-9
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    7 DSNPTHFTDKIEINDFPQQARWKITQKSTVGEIVEMTGVNIITKGE 144
            D+ P H+  ++EINDFPQ ARWK+T K T+G I E TG  I T+G+
Sbjct:  155 DAMPEHYEAELEINDFPQNARWKVTHKDTLGPISEWTGAAITTRGQ 200
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BLAST of mRNA_H-canaliculatus_F_contig11669.1477.1 vs. uniprot
Match: A0A803P3P3_CANSA (Uncharacterized protein n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A803P3P3_CANSA)

HSP 1 Score: 60.5 bits (145), Expect = 3.090e-9
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    7 DSNPTHFTDKIEINDFPQQARWKITQKSTVGEIVEMTGVNIITKGE 144
            D+ P H+  ++EINDFPQ ARWK+T K T+G I E TG  I T+G+
Sbjct:  649 DAGPKHYRAELEINDFPQNARWKVTHKLTLGTITEWTGAAITTRGK 694
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11669.1477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7K3_9PHAE5.400e-1987.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ88_ECTSI5.400e-1987.23DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A251V0Z9_HELAN1.220e-956.52Putative P-loop containing nucleoside triphosphate... [more]
A0A6S7NFS6_LACSI2.270e-956.52Uncharacterized protein n=3 Tax=Lactuca TaxID=4235... [more]
UPI001CB91CAD2.270e-956.52DEAD-box ATP-dependent RNA helicase 42 n=1 Tax=Eri... [more]
A0A8K1FLP6_PYTOL2.270e-950.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A124SAZ3_CYNCS2.270e-956.52DNA/RNA helicase, DEAD/DEAH box type, N-terminal n... [more]
A0A2D4BFR0_PYTIN2.280e-950.98Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A2P5ACL5_PARAD2.820e-954.35KH domain containing protein n=2 Tax=Cannabaceae T... [more]
A0A803P3P3_CANSA3.090e-954.35Uncharacterized protein n=4 Tax=Cannabis sativa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11669contigH-canaliculatus_F_contig11669:3892..4065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D8LJ88
KEGG koko:K12811
KEGG Pathwayko03040,map03040
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0334@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.0209484-CDS-H-canaliculatus_F_contig11669:3891..40651622928859.0209484-CDS-H-canaliculatus_F_contig11669:3891..4065Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11669 3892..4065 +
1696845591.9005606-CDS-H-canaliculatus_F_contig11669:3891..40651696845591.9005606-CDS-H-canaliculatus_F_contig11669:3891..4065Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11669 3892..4065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11669.1477.1prot_H-canaliculatus_F_contig11669.1477.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11669 3892..4065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11669.1477.1

>prot_H-canaliculatus_F_contig11669.1477.1 ID=prot_H-canaliculatus_F_contig11669.1477.1|Name=mRNA_H-canaliculatus_F_contig11669.1477.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
GPDSNPTHFTDKIEINDFPQQARWKITQKSTVGEIVEMTGVNIITKGECP
PPPPPPPP
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mRNA from alignment at H-canaliculatus_F_contig11669:3892..4065+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11669.1477.1 ID=mRNA_H-canaliculatus_F_contig11669.1477.1|Name=mRNA_H-canaliculatus_F_contig11669.1477.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=174bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11669:3892..4065+ (Hapterophycus canaliculatus Oshoro5f female)
GGGCCCGACTCGAACCCGACCCACTTCACGGACAAGATCGAGATCAACGA
CTTCCCTCAGCAAGCCCGGTGGAAGATCACGCAGAAGAGCACCGTCGGCG
AGATCGTGGAGATGACGGGCGTCAACATCATCACCAAGGGTGAGTGCCCC
CCCCCCCCCCCCCCCCCCCCCCCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11669:3892..4065+

>mRNA_H-canaliculatus_F_contig11669.1477.1 ID=mRNA_H-canaliculatus_F_contig11669.1477.1|Name=mRNA_H-canaliculatus_F_contig11669.1477.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11669:3892..4065+ (Hapterophycus canaliculatus Oshoro5f female)
GGGCCCGACTCGAACCCGACCCACTTCACGGACAAGATCGAGATCAACGA
CTTCCCTCAGCAAGCCCGGTGGAAGATCACGCAGAAGAGCACCGTCGGCG
AGATCGTGGAGATGACGGGCGTCAACATCATCACCAAGGGTGAGTGCCCC
CCCCCCCCCCCCCCCCCCCCCCCAGGGCCCGACTCGAACCCGACCCACTT
CACGGACAAGATCGAGATCAACGACTTCCCTCAGCAAGCCCGGTGGAAGA
TCACGCAGAAGAGCACCGTCGGCGAGATCGTGGAGATGACGGGCGTCAAC
ATCATCACCAAGGGTGAGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCA
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