mRNA_H-canaliculatus_F_contig11669.1475.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11669.1475.1
Unique NamemRNA_H-canaliculatus_F_contig11669.1475.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11669.1475.1 vs. uniprot
Match: A0A6H5K7K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K3_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.280e-12
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MAEEFQGKVDSGQARKASSGFSGKGFTFDDSEQSESQQV 117
            MAEEFQGKVDSGQARKASSGFSGKGFTFDDSEQSESQQ+
Sbjct:  950 MAEEFQGKVDSGQARKASSGFSGKGFTFDDSEQSESQQM 988
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11669.1475.1 vs. uniprot
Match: D8LJ88_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ88_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.290e-12
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 MAEEFQGKVDSGQARKASSGFSGKGFTFDDSEQSESQQV 117
            MAEEFQGKVDSGQARKASSGFSGKGFTFDDSEQSESQQ+
Sbjct: 1072 MAEEFQGKVDSGQARKASSGFSGKGFTFDDSEQSESQQM 1110
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11669.1475.1 vs. uniprot
Match: A0A835YQB2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQB2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.170e-5
Identity = 26/39 (66.67%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 MAEEFQGKVDSGQARKASSGFSGKGFTFDDSEQSESQQV 117
            MA+ F  KV SG ARKA+SGFSGKGFTFDD+EQ+++Q++
Sbjct:  501 MADAFGAKVASGLARKANSGFSGKGFTFDDAEQTDAQKI 539
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11669.1475.1 vs. uniprot
Match: A0A7R9U272_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U272_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 5.640e-5
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    1 MAEEFQGKVDSGQARKASSGFSGKGFTFDDSEQSESQQVNHF-HPPHRLSISLAGRVCDGARCRSNLRLTS 210
            MA+ F+ KV +GQA+KA+SGF GKGFTFD SE++E+Q++         + + L     D  + R   RL +
Sbjct:  804 MADRFEAKVAAGQAKKAASGFRGKGFTFDGSEKTEAQRLEDMKRKKTEIELGLRDATEDVDKARLEARLAA 874
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11669.1475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K7K3_9PHAE1.280e-1297.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ88_ECTSI1.290e-1297.44DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835YQB2_9STRA2.170e-566.67P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7R9U272_9STRA5.640e-540.85Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11669contigH-canaliculatus_F_contig11669:960..1379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue2.9e-11
Seed eggNOG ortholog2880.D8LJ88
KEGG koko:K12811
KEGG Pathwayko03040,map03040
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0334@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size421
Cds size420
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928858.859766-CDS-H-canaliculatus_F_contig11669:959..13791622928858.859766-CDS-H-canaliculatus_F_contig11669:959..1379Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11669 960..1379 +
1696845591.8569326-CDS-H-canaliculatus_F_contig11669:959..13791696845591.8569326-CDS-H-canaliculatus_F_contig11669:959..1379Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11669 960..1379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11669.1475.1prot_H-canaliculatus_F_contig11669.1475.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11669 960..1379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11669.1475.1

>prot_H-canaliculatus_F_contig11669.1475.1 ID=prot_H-canaliculatus_F_contig11669.1475.1|Name=mRNA_H-canaliculatus_F_contig11669.1475.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=140bp
MAEEFQGKVDSGQARKASSGFSGKGFTFDDSEQSESQQVNHFHPPHRLSI
SLAGRVCDGARCRSNLRLTSLVSWSGICVMSGIAAVDTSATVSVRFHIME
TGSRLPHVNSTPSSTGVRWTAMIPVGFAPYHTHLWSISKP
back to top

mRNA from alignment at H-canaliculatus_F_contig11669:960..1379+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11669.1475.1 ID=mRNA_H-canaliculatus_F_contig11669.1475.1|Name=mRNA_H-canaliculatus_F_contig11669.1475.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11669:960..1379+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCGAGGAGTTCCAGGGCAAGGTGGACAGCGGGCAGGCCCGGAAGGC
CAGCAGCGGTTTCTCCGGCAAGGGCTTCACGTTCGACGACTCGGAGCAGA
GCGAATCTCAGCAGGTAAACCATTTCCACCCCCCCCACCGGCTCTCTATT
TCATTGGCGGGGCGAGTATGTGACGGTGCAAGGTGTCGGTCAAATTTGCG
GCTTACCAGTTTAGTTTCATGGTCTGGTATATGCGTCATGTCAGGTATAG
CCGCCGTTGATACGTCAGCTACAGTTTCGGTCCGATTTCATATTATGGAG
ACAGGAAGTCGACTGCCCCATGTAAACAGCACACCTTCGAGTACCGGCGT
TCGTTGGACGGCGATGATACCCGTGGGTTTCGCGCCATATCACACACACC
TTTGGTCCATTTCCAAACCT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11669:960..1379+

>mRNA_H-canaliculatus_F_contig11669.1475.1 ID=mRNA_H-canaliculatus_F_contig11669.1475.1|Name=mRNA_H-canaliculatus_F_contig11669.1475.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11669:960..1379+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCGAGGAGTTCCAGGGCAAGGTGGACAGCGGGCAGGCCCGGAAGGC
CAGCAGCGGTTTCTCCGGCAAGGGCTTCACGTTCGACGACTCGGAGCAGA
GCGAATCTCAGCAGGTAAACCATTTCCACCCCCCCCACCGGCTCTCTATT
TCATTGGCGGGGCGAGTATGTGACGGTGCAAGGTGTCGGTCAAATTTGCG
GCTTACCAGTTTAGTTTCATGGTCTGGTATATGCGTCATGTCAGGTATAG
CCGCCGTTGATACGTCAGCTACAGTTTCGGTCCGATTTCATATTATGGAG
ACAGGAAGTCGACTGCCCCATGTAAACAGCACACCTTCGAGTACCGGCGT
TCGTTGGACGGCGATGATACCCGTGGGTTTCGCGCCATATCACACACACC
TTTGGTCCATTTCCAAACCTATGGCCGAGGAGTTCCAGGGCAAGGTGGAC
AGCGGGCAGGCCCGGAAGGCCAGCAGCGGTTTCTCCGGCAAGGGCTTCAC
GTTCGACGACTCGGAGCAGAGCGAATCTCAGCAGGTAAACCATTTCCACC
CCCCCCACCGGCTCTCTATTTCATTGGCGGGGCGAGTATGTGACGGTGCA
AGGTGTCGGTCAAATTTGCGGCTTACCAGTTTAGTTTCATGGTCTGGTAT
ATGCGTCATGTCAGGTATAGCCGCCGTTGATACGTCAGCTACAGTTTCGG
TCCGATTTCATATTATGGAGACAGGAAGTCGACTGCCCCATGTAAACAGC
ACACCTTCGAGTACCGGCGTTCGTTGGACGGCGATGATACCCGTGGGTTT
CGCGCCATATCACACACACCTTTGGTCCATTTCCAAACCT
back to top