mRNA_H-canaliculatus_F_contig1166.1464.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1166.1464.1
Unique NamemRNA_H-canaliculatus_F_contig1166.1464.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1166.1464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1166contigH-canaliculatus_F_contig1166:3220..4120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size901
Cds size753
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.528631-CDS-H-canaliculatus_F_contig1166:3219..39721622928857.528631-CDS-H-canaliculatus_F_contig1166:3219..3972Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1166 3220..3972 -
1696845591.2765079-CDS-H-canaliculatus_F_contig1166:3219..39721696845591.2765079-CDS-H-canaliculatus_F_contig1166:3219..3972Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1166 3220..3972 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.5457914-UTR-H-canaliculatus_F_contig1166:3972..41201622928857.5457914-UTR-H-canaliculatus_F_contig1166:3972..4120Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1166 3973..4120 -
1696845591.2862523-UTR-H-canaliculatus_F_contig1166:3972..41201696845591.2862523-UTR-H-canaliculatus_F_contig1166:3972..4120Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1166 3973..4120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1166.1464.1prot_H-canaliculatus_F_contig1166.1464.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1166 3220..3972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1166.1464.1

>prot_H-canaliculatus_F_contig1166.1464.1 ID=prot_H-canaliculatus_F_contig1166.1464.1|Name=mRNA_H-canaliculatus_F_contig1166.1464.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=251bp
MDPDPTSIQPQQDDNNEVAVQQPIPIQPAPSSPAGHQARQQQPSAQHALY
LAALPQHQQHQQPQQQHQHQQHQQLQQQQQQQQQQQQQHQQQQASQQHYR
PHSLPGILAASGSAHPPLNPAVVSATAAAAAVAANTASFSLAHSASLLPP
PPPPPSPLAATAAETAAERLNSWRGGAVVAAGASSVGASSSLGTGVIPNP
VAAAHQVGGGAAAATAAAAAPLFGGGIGAGAGSVAIVVGAQFATSKDLRV
A
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mRNA from alignment at H-canaliculatus_F_contig1166:3220..4120-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1166.1464.1 ID=mRNA_H-canaliculatus_F_contig1166.1464.1|Name=mRNA_H-canaliculatus_F_contig1166.1464.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=901bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1166:3220..4120- (Hapterophycus canaliculatus Oshoro5f female)
GTGTTATTTTTCCCCCGTCTATTTTTGTACCCTCCTGCTGTCATACCGCC
CATCGCCCTGGGCAAGTGTACCCTTCTTCAAATCCTCCCCCTCCGCTTGT
CGGAGTTTCAAGACCAACCCCTGTTGAACGCGAGGGAACTTCGGAGTCAT
GGATCCTGACCCAACCAGCATCCAGCCACAGCAAGATGATAACAACGAAG
TTGCCGTGCAGCAGCCGATACCGATACAACCGGCGCCATCGTCCCCTGCG
GGTCACCAAGCTCGCCAGCAACAGCCGTCAGCTCAACATGCATTGTACCT
AGCCGCGCTTCCCCAACACCAGCAGCACCAGCAACCCCAGCAGCAGCACC
AACACCAGCAGCACCAGCAACTACAGCAGCAGCAGCAGCAGCAGCAGCAA
CAACAACAACAACATCAGCAACAACAAGCATCGCAGCAGCACTACCGCCC
CCACTCTCTGCCAGGCATCCTGGCAGCATCAGGAAGCGCGCACCCCCCTC
TCAACCCCGCCGTCGTCTCGGCCACCGCGGCTGCTGCCGCCGTCGCCGCG
AACACCGCCAGTTTCTCTTTGGCTCATTCCGCCAGCTTGCTGCCGCCGCC
GCCGCCGCCGCCCTCGCCTCTTGCAGCCACTGCTGCCGAAACTGCTGCTG
AACGCTTGAACTCTTGGCGCGGAGGTGCCGTTGTGGCTGCTGGGGCGAGC
TCAGTGGGGGCGTCGTCATCGCTTGGTACGGGTGTCATCCCAAACCCTGT
TGCAGCAGCACATCAAGTAGGCGGAGGCGCTGCTGCTGCTACTGCTGCTG
CAGCAGCACCGCTTTTTGGCGGCGGGATAGGTGCCGGCGCCGGCAGCGTG
GCTATTGTCGTCGGCGCGCAGTTCGCGACGAGCAAGGACTTGAGGGTCGC
G
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1166:3220..4120-

>mRNA_H-canaliculatus_F_contig1166.1464.1 ID=mRNA_H-canaliculatus_F_contig1166.1464.1|Name=mRNA_H-canaliculatus_F_contig1166.1464.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1506bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1166:3220..4120- (Hapterophycus canaliculatus Oshoro5f female)
ATGGATCCTGACCCAACCAGCATCCAGCCACAGCAAGATGATAACAACGA
AGTTGCCGTGCAGCAGCCGATACCGATACAACCGGCGCCATCGTCCCCTG
CGGGTCACCAAGCTCGCCAGCAACAGCCGTCAGCTCAACATGCATTGTAC
CTAGCCGCGCTTCCCCAACACCAGCAGCACCAGCAACCCCAGCAGCAGCA
CCAACACCAGCAGCACCAGCAACTACAGCAGCAGCAGCAGCAGCAGCAGC
AACAACAACAACAACATCAGCAACAACAAGCATCGCAGCAGCACTACCGC
CCCCACTCTCTGCCAGGCATCCTGGCAGCATCAGGAAGCGCGCACCCCCC
TCTCAACCCCGCCGTCGTCTCGGCCACCGCGGCTGCTGCCGCCGTCGCCG
CGAACACCGCCAGTTTCTCTTTGGCTCATTCCGCCAGCTTGCTGCCGCCG
CCGCCGCCGCCGCCCTCGCCTCTTGCAGCCACTGCTGCCGAAACTGCTGC
TGAACGCTTGAACTCTTGGCGCGGAGGTGCCGTTGTGGCTGCTGGGGCGA
GCTCAGTGGGGGCGTCGTCATCGCTTGGTACGGGTGTCATCCCAAACCCT
GTTGCAGCAGCACATCAAGTAGGCGGAGGCGCTGCTGCTGCTACTGCTGC
TGCAGCAGCACCGCTTTTTGGCGGCGGGATAGGTGCCGGCGCCGGCAGCG
TGGCTATTGTCGTCGGCGCGCAGTTCGCGACGAGCAAGGACTTGAGGGTC
GCGATGGATCCTGACCCAACCAGCATCCAGCCACAGCAAGATGATAACAA
CGAAGTTGCCGTGCAGCAGCCGATACCGATACAACCGGCGCCATCGTCCC
CTGCGGGTCACCAAGCTCGCCAGCAACAGCCGTCAGCTCAACATGCATTG
TACCTAGCCGCGCTTCCCCAACACCAGCAGCACCAGCAACCCCAGCAGCA
GCACCAACACCAGCAGCACCAGCAACTACAGCAGCAGCAGCAGCAGCAGC
AGCAACAACAACAACAACATCAGCAACAACAAGCATCGCAGCAGCACTAC
CGCCCCCACTCTCTGCCAGGCATCCTGGCAGCATCAGGAAGCGCGCACCC
CCCTCTCAACCCCGCCGTCGTCTCGGCCACCGCGGCTGCTGCCGCCGTCG
CCGCGAACACCGCCAGTTTCTCTTTGGCTCATTCCGCCAGCTTGCTGCCG
CCGCCGCCGCCGCCGCCCTCGCCTCTTGCAGCCACTGCTGCCGAAACTGC
TGCTGAACGCTTGAACTCTTGGCGCGGAGGTGCCGTTGTGGCTGCTGGGG
CGAGCTCAGTGGGGGCGTCGTCATCGCTTGGTACGGGTGTCATCCCAAAC
CCTGTTGCAGCAGCACATCAAGTAGGCGGAGGCGCTGCTGCTGCTACTGC
TGCTGCAGCAGCACCGCTTTTTGGCGGCGGGATAGGTGCCGGCGCCGGCA
GCGTGGCTATTGTCGTCGGCGCGCAGTTCGCGACGAGCAAGGACTTGAGG
GTCGCG
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