mRNA_H-canaliculatus_F_contig1166.1463.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1166.1463.1
Unique NamemRNA_H-canaliculatus_F_contig1166.1463.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1166.1463.1 vs. uniprot
Match: D8LK73_ECTSI (Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK73_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 7.370e-18
Identity = 46/56 (82.14%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:  178 MRPSCEALMDVAVAGAVEANTSIKASTIHAQLKEKGIVVNLRQVSRAKMNVAKKQQ 345
            MRPSCEALMDVAVAGA+E +TS+KAS IHAQL+++GIVVNLRQVSRAKMNVAK++Q
Sbjct:    1 MRPSCEALMDVAVAGAMEVDTSVKASAIHAQLRQQGIVVNLRQVSRAKMNVAKRKQ 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1166.1463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK73_ECTSI7.370e-1882.14Hydroxymethylglutaryl-CoA reductase (NADPH) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1166contigH-canaliculatus_F_contig1166:837..3213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue1.7e-16
Seed eggNOG ortholog2880.D8LK73
Preferred nameHMGR
KEGG rclassRC00004,RC00644
KEGG koko:K00021
KEGG ReactionR02082
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04152,ko04976,map00900,map01100,map01110,map01130,map04152,map04976
KEGG ModuleM00095
EggNOG free text desc.hydroxymethylglutaryl-CoA reductase (NADPH) activity
EggNOG OGsCOG1257@1,KOG2480@2759
EC1.1.1.34
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size541
Cds size531
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1166.1463.1prot_H-canaliculatus_F_contig1166.1463.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1166 837..3204 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.6546853-CDS-H-canaliculatus_F_contig1166:836..10941622928857.6546853-CDS-H-canaliculatus_F_contig1166:836..1094Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1166 837..1094 -
1696845591.3269928-CDS-H-canaliculatus_F_contig1166:836..10941696845591.3269928-CDS-H-canaliculatus_F_contig1166:836..1094Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1166 837..1094 -
1622928857.6921241-CDS-H-canaliculatus_F_contig1166:1689..18591622928857.6921241-CDS-H-canaliculatus_F_contig1166:1689..1859Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1166 1690..1859 -
1696845591.3393865-CDS-H-canaliculatus_F_contig1166:1689..18591696845591.3393865-CDS-H-canaliculatus_F_contig1166:1689..1859Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1166 1690..1859 -
1622928857.710047-CDS-H-canaliculatus_F_contig1166:2390..24601622928857.710047-CDS-H-canaliculatus_F_contig1166:2390..2460Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1166 2391..2460 -
1696845591.350507-CDS-H-canaliculatus_F_contig1166:2390..24601696845591.350507-CDS-H-canaliculatus_F_contig1166:2390..2460Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1166 2391..2460 -
1622928857.7249904-CDS-H-canaliculatus_F_contig1166:3171..32041622928857.7249904-CDS-H-canaliculatus_F_contig1166:3171..3204Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1166 3172..3204 -
1696845591.3593636-CDS-H-canaliculatus_F_contig1166:3171..32041696845591.3593636-CDS-H-canaliculatus_F_contig1166:3171..3204Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1166 3172..3204 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.747069-UTR-H-canaliculatus_F_contig1166:3204..32131622928857.747069-UTR-H-canaliculatus_F_contig1166:3204..3213Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1166 3205..3213 -
1696845591.3688014-UTR-H-canaliculatus_F_contig1166:3204..32131696845591.3688014-UTR-H-canaliculatus_F_contig1166:3204..3213Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1166 3205..3213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1166.1463.1

>prot_H-canaliculatus_F_contig1166.1463.1 ID=prot_H-canaliculatus_F_contig1166.1463.1|Name=mRNA_H-canaliculatus_F_contig1166.1463.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=177bp
MVNNRGLVCKRGGSRQKKFGCAGCGYLVRAVKATGTGLWKISSIEKDDHP
RCVGGRMRPSCEALMDVAVAGAVEANTSIKASTIHAQLKEKGIVVNLRQV
SRAKMNVAKKQQRGAWSGADGGTMPPPPPQQQQQVGTASARGTAGGLGGG
GSEGGGGKRRKIGGGEAAVVVNVSREP
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mRNA from alignment at H-canaliculatus_F_contig1166:837..3213-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1166.1463.1 ID=mRNA_H-canaliculatus_F_contig1166.1463.1|Name=mRNA_H-canaliculatus_F_contig1166.1463.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2377bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1166:837..3213- (Hapterophycus canaliculatus Oshoro5f female)
AAAAGCCTGATGGTCAACAACCGCGGGCTCGTGTGCAAGAGGGTGAGCAC
ATGTTCGTCGTGAACCCGCCATTCCAGTCCGCGGTACTTGTACAGGAATC
CGAAATCCACGTATGACGCCCGACGATACAAGCGTACGATCACGGATTTC
TGCTTGGTCCACCCCTGGTGTTGACAGGGCGCCAACAGCGTCTGCTCAGC
TGGTCTTAGAAATCCACCGCCGTGGCACGTTGTAGACCTGTTCGGGGTTT
AGGTATTCAGTGCTGTACCCTCAACACTTCAGACAGAATTAATATGCCTC
CGAGTGACTACAATAGAGGGTTTCACGGAAGGAACCCCCGAGCGGTGGCA
CGAAATACCAGCGTGCGGCCCCGCGACATCGTCTTCCTGGACGAGCACTC
TCGCGTTAGGAATTAACGTTCTTGCACGCACGTGTTGAAATCGTATCGTG
CAGCCTCGTCGAGCCTCTTTCTTCCCGCCGGTAAGCTCTCCGTCGCAAGA
CTTTCATCTTATCTACAAACGTAGTTAGGTCTTGATGCAAGGTCTACTCC
CGACCTACGTGCGCACCCCTCGTATGCGCCACTTCTCGACCGGTCACCTG
TCCTTCCCTCATCTCGTCACAGCTCGGCCAACGCCGCAACGGTACGCCGT
GACATGAAACCCCGAGCCCGTTTGCGCCTACCTAACCGCCGTTTTCTCTT
TGTGTGTAACTTTCCTTCGCTTTTCGACGACGACGGGGACGACGAAAACG
CAGGGCGGAAGCCGGCAGAAGAAGTTCGGGTGCGCCGGGTGTGGCTACCT
GGTCCGGGCCGTCAAGGCCACAGGTAATCCCGAAGCCGAGGAATGCTATT
TTGAGCCATGCCATCGATCGGCAAGCAACCCAAATCGATCCGTCTACTCG
ATCCCACGTTGCGGCAGCCGCCCACCCCGCTATTGGCCTCTCGATCTCTC
TGCGCTCCCGTGGGAGGCTGGTTGAGCATTCTCGAGGTTGATCGAGCACT
CTCGTGAAGACTTGCACGGTACTGATCTGATCGTGAATGCGGTAGAAATT
GAGGGCTAGAAAGATGATCTGCGGCACATTAACAGCAGCACGACTTCTGC
CTCCTCGCCCGCGTCCGGGAGGACAGTCTCACACTGCCTGCAACAACCTC
AACACCACCACCAACACCACCACCACCATCACCCACGAACAACACCACAT
AATAACAACAAACTCGGTAAACCACAGCGATCGCCGCCATCATCACCACG
ACCATCACCACCACCGCAACGCAAAAATCATCAACAGCCGTACCCTCCGC
ACGCTTTCGGCCTTGGCGACCACTCCGCCGTGCCGCGACGTACCACGAAA
CCAGGGACCGGCTTGTGGAAGATCTCGAGCATAGAGAAGGACGACCACCC
CCGCTGTGTTGGTGGGCGCATGCGGCCTTCCTGCGAGGCGCTGATGGATG
TCGCCGTCGCCGGTGCCGTGGAAGCGAACACCTCGATCAAGGCGTCCACC
ATTCACGCTCAGCTCAAGGAGAAGGTGGGCAGTCTGCTTGTCCGTCAGCC
CCCGCGCGCGCGCGTGGGTGAAGGACGTGCTCACCTGTTCCATGCGTTCG
TTCGAGGATGCTGGATCCAAGAAGGGCAGGCAGGTCCCCTCTTCTGTGCG
TAGGCGAGGGAGGGAGAGGGAGAGGGAGAGACAGACAAGACGGACAGACA
AAAGAGAAGCAGAGAGAGAGAGGGGTGGGGGGGGCAACCGGGAGTGCGAG
TAGCAACTCTGAATCGGCGATGCCTGATTGGCGACGGCACCCTGGGTTGG
ACAACGCGTCAGTCCCTGGGCGGGTGAACAAGTGCTACTACGGCAGGAGT
GGCGAGCATCGTTACCAGTCAGTAAGAGAGAAACCACCAGCGGGAAAAGG
AGCACAGACCGGACCGACCATTCAACACTCGTAACGACCGGCCCACAGCA
AGGCATCGATTTTTGTGCTGTGCCCCCCCCCCCTGGCCCCCCCGATCCCC
AAGCTTTTGCCCATCCCGTCTTGCCTCCCTCCTCTCTGCAGCCATATCTG
TGTGCCAGACAGACGCTCGCTCAATCAGCGCCCCATCCATCCACGCCCCC
CGGTGCCGTTGCGTTGCAGGGTATCGTCGTAAACCTTCGCCAGGTGTCGC
GGGCGAAAATGAACGTGGCGAAGAAGCAGCAGCGCGGGGCTTGGAGCGGA
GCTGACGGGGGAACGATGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAAGT
GGGCACCGCTTCCGCGAGGGGTACAGCGGGCGGCCTCGGCGGCGGCGGCA
GTGAAGGTGGCGGCGGGAAGCGGCGCAAGATCGGGGGAGGAGAGGCGGCG
GTAGTGGTGAATGTTTCGCGAGAGCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1166:837..3213-

>mRNA_H-canaliculatus_F_contig1166.1463.1 ID=mRNA_H-canaliculatus_F_contig1166.1463.1|Name=mRNA_H-canaliculatus_F_contig1166.1463.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1062bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1166:837..3213- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTCAACAACCGCGGGCTCGTGTGCAAGAGGATGGTCAACAACCGCGG
GCTCGTGTGCAAGAGGGGCGGAAGCCGGCAGAAGAAGTTCGGGTGCGCCG
GGTGTGGCTACCTGGTCCGGGCCGTCAAGGCCACAGGGCGGAAGCCGGCA
GAAGAAGTTCGGGTGCGCCGGGTGTGGCTACCTGGTCCGGGCCGTCAAGG
CCACAGGGACCGGCTTGTGGAAGATCTCGAGCATAGAGAAGGACGACCAC
CCCCGCTGTGTTGGTGGGCGCATGCGGCCTTCCTGCGAGGCGCTGATGGA
TGTCGCCGTCGCCGGTGCCGTGGAAGCGAACACCTCGATCAAGGCGTCCA
CCATTCACGCTCAGCTCAAGGAGAAGGGACCGGCTTGTGGAAGATCTCGA
GCATAGAGAAGGACGACCACCCCCGCTGTGTTGGTGGGCGCATGCGGCCT
TCCTGCGAGGCGCTGATGGATGTCGCCGTCGCCGGTGCCGTGGAAGCGAA
CACCTCGATCAAGGCGTCCACCATTCACGCTCAGCTCAAGGAGAAGGGTA
TCGTCGTAAACCTTCGCCAGGTGTCGCGGGCGAAAATGAACGTGGCGAAG
AAGCAGCAGCGCGGGGCTTGGAGCGGAGCTGACGGGGGAACGATGCCGCC
GCCGCCGCCGCAGCAGCAGCAGCAAGTGGGCACCGCTTCCGCGAGGGGTA
CAGCGGGCGGCCTCGGCGGCGGCGGCAGTGAAGGTGGCGGCGGGAAGCGG
CGCAAGATCGGGGGAGGAGAGGCGGCGGTAGTGGTGAATGTTTCGCGAGA
GCCGGGTATCGTCGTAAACCTTCGCCAGGTGTCGCGGGCGAAAATGAACG
TGGCGAAGAAGCAGCAGCGCGGGGCTTGGAGCGGAGCTGACGGGGGAACG
ATGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAAGTGGGCACCGCTTCCGC
GAGGGGTACAGCGGGCGGCCTCGGCGGCGGCGGCAGTGAAGGTGGCGGCG
GGAAGCGGCGCAAGATCGGGGGAGGAGAGGCGGCGGTAGTGGTGAATGTT
TCGCGAGAGCCG
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