mRNA_H-canaliculatus_F_contig11658.1462.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11658.1462.1
Unique NamemRNA_H-canaliculatus_F_contig11658.1462.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11658.1462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11658contigH-canaliculatus_F_contig11658:3733..4036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.4718401-CDS-H-canaliculatus_F_contig11658:3732..38011622928857.4718401-CDS-H-canaliculatus_F_contig11658:3732..3801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11658 3733..3801 -
1696845591.2570076-CDS-H-canaliculatus_F_contig11658:3732..38011696845591.2570076-CDS-H-canaliculatus_F_contig11658:3732..3801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11658 3733..3801 -
1622928857.4831967-CDS-H-canaliculatus_F_contig11658:3937..40361622928857.4831967-CDS-H-canaliculatus_F_contig11658:3937..4036Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11658 3938..4036 -
1696845591.2664857-CDS-H-canaliculatus_F_contig11658:3937..40361696845591.2664857-CDS-H-canaliculatus_F_contig11658:3937..4036Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11658 3938..4036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11658.1462.1prot_H-canaliculatus_F_contig11658.1462.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11658 3733..4036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11658.1462.1

>prot_H-canaliculatus_F_contig11658.1462.1 ID=prot_H-canaliculatus_F_contig11658.1462.1|Name=mRNA_H-canaliculatus_F_contig11658.1462.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=56bp
MVKQKGSRHLTGCVSGSWNNSYAEEERDDDRGKIVPVWESPSADGESQLK
HGTTRR
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mRNA from alignment at H-canaliculatus_F_contig11658:3733..4036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11658.1462.1 ID=mRNA_H-canaliculatus_F_contig11658.1462.1|Name=mRNA_H-canaliculatus_F_contig11658.1462.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=304bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11658:3733..4036- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTAAAACAGAAAGGCTCCCGCCACTTGACTGGATGCGTGAGCGGCAG
TTGGAACAACTCCTACGCGGAAGAGGAGAGGGATGACGACAGGGGAAAGG
TGAAAATCCTTTCGAAGATGGAAAACACTCGCCTTCCAGCCGACACTGCA
GACTGCAAAAGGCCTGCTGTGTGTCGTTGTTACTCACCTCCCGCCTTTGG
CAATATCTCTCTGGCTGATCCATCTTCGCCGGAAGATCGTGCCGGTCTGG
GAGAGCCCTTCCGCCGACGGAGAGAGCCAGCTCAAGCATGGAACTACACG
CAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11658:3733..4036-

>mRNA_H-canaliculatus_F_contig11658.1462.1 ID=mRNA_H-canaliculatus_F_contig11658.1462.1|Name=mRNA_H-canaliculatus_F_contig11658.1462.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11658:3733..4036- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTAAAACAGAAAGGCTCCCGCCACTTGACTGGATGCGTGAGCGGCAG
TTGGAACAACTCCTACGCGGAAGAGGAGAGGGATGACGACAGGGGAAAGA
TGGTAAAACAGAAAGGCTCCCGCCACTTGACTGGATGCGTGAGCGGCAGT
TGGAACAACTCCTACGCGGAAGAGGAGAGGGATGACGACAGGGGAAAGAT
CGTGCCGGTCTGGGAGAGCCCTTCCGCCGACGGAGAGAGCCAGCTCAAGC
ATGGAACTACACGCAGGATCGTGCCGGTCTGGGAGAGCCCTTCCGCCGAC
GGAGAGAGCCAGCTCAAGCATGGAACTACACGCAGG
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