mRNA_H-canaliculatus_F_contig11658.1461.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11658.1461.1
Unique NamemRNA_H-canaliculatus_F_contig11658.1461.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11658.1461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11658contigH-canaliculatus_F_contig11658:862..3274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size468
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11658.1461.1prot_H-canaliculatus_F_contig11658.1461.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11658 863..3274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.3842535-CDS-H-canaliculatus_F_contig11658:862..9101622928857.3842535-CDS-H-canaliculatus_F_contig11658:862..910Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11658 863..910 -
1696845591.227471-CDS-H-canaliculatus_F_contig11658:862..9101696845591.227471-CDS-H-canaliculatus_F_contig11658:862..910Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11658 863..910 -
1622928857.4009879-CDS-H-canaliculatus_F_contig11658:1471..18401622928857.4009879-CDS-H-canaliculatus_F_contig11658:1471..1840Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11658 1472..1840 -
1696845591.2373736-CDS-H-canaliculatus_F_contig11658:1471..18401696845591.2373736-CDS-H-canaliculatus_F_contig11658:1471..1840Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11658 1472..1840 -
1622928857.4181263-CDS-H-canaliculatus_F_contig11658:3226..32741622928857.4181263-CDS-H-canaliculatus_F_contig11658:3226..3274Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11658 3227..3274 -
1696845591.246895-CDS-H-canaliculatus_F_contig11658:3226..32741696845591.246895-CDS-H-canaliculatus_F_contig11658:3226..3274Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11658 3227..3274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11658.1461.1

>prot_H-canaliculatus_F_contig11658.1461.1 ID=prot_H-canaliculatus_F_contig11658.1461.1|Name=mRNA_H-canaliculatus_F_contig11658.1461.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=155bp
RIRGGIKPFYHGRAEEDGRKEIFNTQSVQHATRLPSRLLVMPVQVNASAG
TWASTGGWTLYRDRDRDHPMITCPAPLCWCMQRELARPRWADARSVEDVV
LSTPASQDLLALPPAGCEMLTASCRAALRGVDPSKPEPQVLVATIERDGA
AKYAT
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mRNA from alignment at H-canaliculatus_F_contig11658:862..3274-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11658.1461.1 ID=mRNA_H-canaliculatus_F_contig11658.1461.1|Name=mRNA_H-canaliculatus_F_contig11658.1461.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2413bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11658:862..3274- (Hapterophycus canaliculatus Oshoro5f female)
AGAATCCGGGGGGGGATAAAGCCGTTTTACCATGGCCGAGCGGAGGAGGT
GAGCGAGGGAAACGGCTGTGTGATACACGGTTCGAGCGTGAAAATTGTGT
TGGCTTTCGATGGCTGGGTCGTCGATCGTGGTGGGGATGAAGGGGTTGCC
GGGCGTGGTCTGCGAGATGCAAACCAGTCTACCTGCGGTGCCTTTTCAGA
TGATCCCGACGTGTGCTCAGGCGTGGGGCGCGTTTAAGGGTAGAGGGAGA
CATCCAAGAAGATCTCCCTCGTGCGTCTTTGTGTTGGTCGAATCCCACGC
ATATCGCCACAGGGGAACGGGTGTAAGGCGCTCTTAGAGTAAAGCTGGCT
CTCTACACTGTACAGATCCAGTGCGGCGGTGCAACCACAACGTGTGTATG
TATCGATAGTGACTCTGTAATCCGGGAATGCAGGCTTTAGGGCCCAAAGT
CTTTCTCAGGTGTCCCCGATCATCACGCACGTATCTCGTATCTCTTCCCC
CTCCCAGCGGCCATATTTTGTCGCGTGCGCTTTCGCTGCCGACACACACA
TATACACACAAACGTGCGTAACGGATTTGGTTCGCTCCAATGTCTTTTTC
ACTGAACACACGATGCCTTCCATAGAGACCGTCGCTCCTGAAAGGGTAGG
GCCCCTTGAGGATATCAGGATATCCTTGTAGATGGTGCTGCTACTGGTGT
TGGCTTCCTTCGTCTTTCTCCGAACACGCTGGTGCTGCTGCCGCCCTCTG
GCTATCCCTCGAGCCTTCAGAGTGATGCTGCTCTTCGATTGCTTACGGAG
AAGCCCGTCTTATCGAACGATTGCAATCGTAGAGTGTAGTACGAAGCCAA
GTACTTGATTGAGCGATGGATGCGGCTCTTTTGTACTTGATTGAGCGATA
GGCGTGACTCTTATCCTGATTAGACTTCTTCCAGCCTCGTGACCGAAGTT
CCTCTCGGTGAAGCCTACAAGCACGGGGCAGGTTCCCCATGGCTCACCAC
GAGAGAGCGTTTTTGCGGCCGATGCATTTCGCTGGTCTCAGTTCCAGCGT
TGCCTTGTCCATCTTGTAGTGTGCCCGCTAGTTTCTATTTTCCCAACAGC
AAACTCGTTGAGTCAAACGAGCAGGGTACGAGCACCGTCTGGGTGGCTGT
TTTGAGGGGGGATCAGGAACGCCCCTTACCCCGTACAGGCCGTGGTATAG
ATAAAGATAACCCCGAGGTCCGAGCCTACCGCTGTCGTGAGCCTCCCTCC
TCCCCTGGCATCCACCTGGCATTTCTCGGTCGCAGCAGACGCTGGTCAAT
CTTCTCAAAAAGTAGGAAAGCGATGTCACCAAGTTGCTGCGAGAGTGCAA
TACCGACACGATGATGATTCAATTGTCTAGGCAAAGCAACACAGGCGTAT
CCCCCCATTGCCTTGTTATTTAATTTCTCGGCAGGATGGAAGGAAAGAGA
TATTCAACACCCAAAGCGTACAACATGCTACAAGACTCCCCTCGCGATTG
CTCGTTATGCCTGTGCAAGTAAATGCCTCGGCGGGCACTTGGGCTAGTAC
TGGAGGGTGGACATTGTATAGAGACAGAGACCGTGATCATCCGATGATCA
CCTGCCCCGCCCCCCTCTGCTGGTGCATGCAACGGGAACTCGCGCGGCCT
AGGTGGGCGGACGCCAGATCAGTCGAGGATGTGGTCTTGTCGACGCCTGC
TAGCCAGGACCTCCTCGCCCTGCCGCCGGCCGGGTGCGAAATGTTGACGG
CCTCCTGCAGGGCGGCACTCCGAGGCGTGGACCCCTCCAAGCCAGAACCG
CAGGTAAGGCGGAAGATGCCCCCTCGACGCCCGCAAACGGCGGTAGAGAA
TCTGGTGACGGGCGTCTTTGGACTATTTTCCCCGGATAATATCGAACGCC
GACCCGGCTTGAAAGGTTGCAAGGCTTGCGGGGCAGTGGAAGCGTCGAAA
ACTCGGAAGAATTTTCGAATGAATGCAGCTACATATATGAAGACACAGTC
ATCAAGAAAGCCAGGCAAGGGTTGACCGGCAAATGAGCTCGACCTGGCAC
ATGAACACACAATGCAAGACGCCTCTGTCATTTTAGGCTGCAAGTTGTCT
CGCCCTATTTTGCTGTGCACGGCCTCTGGCGTTCGGTGATGCCGTGGTTC
AACAAGCGCGGCTGCGTGCCCGTGAAGAAGGCCTGAAGACGCTAATGCTT
TCTTCAGCCCCTCCCTTTCCGCCAGTGTGTTTGGGGAAATCGCCAGAGTC
GACCTCACCCCCCCAGGTCTTCAGACGTAAGCACGGGCATCGGCCACGGT
CGAGCCTGACTGACCTGTACTCTAAGCCCACCCGCCCATTCGATGCCACG
CTGTTTGGACGCAGGTGCTGGTCGCCACCATCGAACGTGACGGGGCGGCC
AAGTACGCCACCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11658:862..3274-

>mRNA_H-canaliculatus_F_contig11658.1461.1 ID=mRNA_H-canaliculatus_F_contig11658.1461.1|Name=mRNA_H-canaliculatus_F_contig11658.1461.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=930bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11658:862..3274- (Hapterophycus canaliculatus Oshoro5f female)
AGAATCCGGGGGGGGATAAAGCCGTTTTACCATGGCCGAGCGGAGGAGAG
AATCCGGGGGGGGATAAAGCCGTTTTACCATGGCCGAGCGGAGGAGGATG
GAAGGAAAGAGATATTCAACACCCAAAGCGTACAACATGCTACAAGACTC
CCCTCGCGATTGCTCGTTATGCCTGTGCAAGTAAATGCCTCGGCGGGCAC
TTGGGCTAGTACTGGAGGGTGGACATTGTATAGAGACAGAGACCGTGATC
ATCCGATGATCACCTGCCCCGCCCCCCTCTGCTGGTGCATGCAACGGGAA
CTCGCGCGGCCTAGGTGGGCGGACGCCAGATCAGTCGAGGATGTGGTCTT
GTCGACGCCTGCTAGCCAGGACCTCCTCGCCCTGCCGCCGGCCGGGTGCG
AAATGTTGACGGCCTCCTGCAGGGCGGCACTCCGAGGCGTGGACCCCTCC
AAGCCAGAACCGCAGGATGGAAGGAAAGAGATATTCAACACCCAAAGCGT
ACAACATGCTACAAGACTCCCCTCGCGATTGCTCGTTATGCCTGTGCAAG
TAAATGCCTCGGCGGGCACTTGGGCTAGTACTGGAGGGTGGACATTGTAT
AGAGACAGAGACCGTGATCATCCGATGATCACCTGCCCCGCCCCCCTCTG
CTGGTGCATGCAACGGGAACTCGCGCGGCCTAGGTGGGCGGACGCCAGAT
CAGTCGAGGATGTGGTCTTGTCGACGCCTGCTAGCCAGGACCTCCTCGCC
CTGCCGCCGGCCGGGTGCGAAATGTTGACGGCCTCCTGCAGGGCGGCACT
CCGAGGCGTGGACCCCTCCAAGCCAGAACCGCAGGTGCTGGTCGCCACCA
TCGAACGTGACGGGGCGGCCAAGTACGCCACCGTGCTGGTCGCCACCATC
GAACGTGACGGGGCGGCCAAGTACGCCACC
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