mRNA_H-canaliculatus_F_contig11652.1459.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11652.1459.1
Unique NamemRNA_H-canaliculatus_F_contig11652.1459.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11652.1459.1 vs. uniprot
Match: D7G1Y7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y7_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.930e-9
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    7 LHTAASQGLTDQTLALLAAGSIDIDSGTSLGRTPLMCAARHGHSHVVKILLDYGAN 174
            LH AA  G  D+T ALL++G++D++ G   G TPLM A+  G SH+VKILLD GAN
Sbjct:   13 LHEAAHFGSADRTRALLSSGAVDVNQGDPAGFTPLMLASMEGQSHIVKILLDNGAN 68          
BLAST of mRNA_H-canaliculatus_F_contig11652.1459.1 vs. uniprot
Match: A0A093ZJC4_9PEZI (Helo_like_N domain-containing protein n=2 Tax=unclassified Pseudogymnoascus TaxID=2637121 RepID=A0A093ZJC4_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 2.800e-8
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 TNLHTAASQGLTDQTLALLAAGSIDIDSGTSLGRTPLMCAARHGHSHVVKILLDYGANVYITNGLEGTALH 213
            T+LH A+  GL +    LL   ++ ID+ T +G TPL+ AA  GH+ +V++LL  GAN Y+TN L GTALH
Sbjct:  662 TSLHAASHFGLENTLRKLLDEDTLPIDAKTKMGSTPLIKAASRGHASLVRMLLQKGANKYLTN-LYGTALH 731          
BLAST of mRNA_H-canaliculatus_F_contig11652.1459.1 vs. uniprot
Match: UPI001923AC8E (26S proteasome non-ATPase regulatory subunit 10-like isoform X3 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI001923AC8E)

HSP 1 Score: 55.5 bits (132), Expect = 1.060e-6
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    7 LHTAASQGLTDQTLALLAAGSIDIDSGTSLGRTPLMCAARHGHSHVVKILLDYGANVYITNGLEGTALH 213
            +H AA +G T+    LL    +D+D+G   G TPL+ AAR GH+   K LL+ GAN  I + L  TALH
Sbjct:   59 IHFAAREGKTEVCRFLLEELKLDVDTGDEDGETPLLHAARQGHTLTAKYLLERGANPSIPSDLGATALH 127          
BLAST of mRNA_H-canaliculatus_F_contig11652.1459.1 vs. uniprot
Match: A0A6A3D1U5_HIBSY (Putative WD-repeat protein n=4 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3D1U5_HIBSY)

HSP 1 Score: 55.5 bits (132), Expect = 1.080e-6
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    7 LHTAASQGLTDQTLALLAAGSIDIDSGTSLGRTPLMCAARHGHSHVVKILLDYGANVYITNGLEGTALH 213
            +H AA +G T+    LL    +D+D+G   G TPL+ AAR GH+   K LL+ GAN  I + L  TALH
Sbjct:   59 IHFAAREGKTEVCRFLLEELKLDVDTGDEDGETPLLHAARQGHTLTAKYLLERGANPSIPSDLGATALH 127          
BLAST of mRNA_H-canaliculatus_F_contig11652.1459.1 vs. uniprot
Match: A0A2P5BBF9_PARAD (N-terminal acetyltransferase A, auxiliary subunit n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5BBF9_PARAD)

HSP 1 Score: 52.8 bits (125), Expect = 9.750e-6
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    7 LHTAASQGLTDQTLALLAAGSIDIDSGTSLGRTPLMCAARHGHSHVVKILLDYGANVYITNGLEGTALH 213
            LH AA +G T+    LL    +D+D+    G TPL+ AAR GH+   K LL++GA+  I + L  TALH
Sbjct:   60 LHFAAREGKTEVCNYLLEELKLDVDTVDEDGETPLIHAARQGHTVTAKFLLEHGADPSIASNLGATALH 128          
BLAST of mRNA_H-canaliculatus_F_contig11652.1459.1 vs. uniprot
Match: A0A0F3M9K2_ORITS (Ankyrin repeat family protein n=1 Tax=Orientia tsutsugamushi str. Gilliam TaxID=1359184 RepID=A0A0F3M9K2_ORITS)

HSP 1 Score: 50.1 bits (118), Expect = 9.960e-6
Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 1
Query:    1 TNLHTAASQGLTDQTLALLAAGSIDIDSGTSLGRTPLMCAARHGHSHVVKILLDYGANVYITNGLEGTALH 213
            T+LH AA QG  ++   L+   +ID++       TPL CAA+ GH+ VVK LL +GA+  +      TALH
Sbjct:    4 TDLHDAAKQGDINKVKHLILKENIDVNFQDEDKNTPLYCAAKEGHTDVVKWLLTHGADSSLQCQFTNTALH 74          
BLAST of mRNA_H-canaliculatus_F_contig11652.1459.1 vs. uniprot
Match: A0A6A2YXY5_HIBSY (PRA1 family protein E-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YXY5_HIBSY)

HSP 1 Score: 52.0 bits (123), Expect = 1.810e-5
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    7 LHTAASQGLTDQTLALLAAGSIDIDSGTSLGRTPLMCAARHGHSHVVKILLDYGANVYITNGLEGTALH 213
            +H AA +G T+    LL   ++D+D+    G TPL+ AAR GH+   K +L+ GAN  I + L  TALH
Sbjct:   59 IHFAAREGKTEVCKFLLEELNLDVDTRDEDGETPLLHAARQGHTLTAKYILECGANPTIPSDLGATALH 127          
BLAST of mRNA_H-canaliculatus_F_contig11652.1459.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.810e-5
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    7 LHTAASQGLTDQTLALLAAGSIDIDSGTSLGRTPLMCAARHGHSHVVKILLDYGANVYITN 189
            L  AA  G       LLA+G+ DID G  +G TPLM A+R G+  +V++LL+ GA V++T+
Sbjct:   18 LQAAADCGSFKTAANLLASGAFDIDQGNEVGWTPLMMASRGGYPRIVRMLLNKGAQVWVTD 78          
BLAST of mRNA_H-canaliculatus_F_contig11652.1459.1 vs. uniprot
Match: D8LB07_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB07_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.130e-5
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    4 NLHTAASQGLTDQTLALLAAGSIDIDSGT-SLGRTPLMCAARHGHSHVVKILLDYGANVYITN 189
            +LH A  +G T++ +ALL++   ++D G  S+G TPLM A   G+  +VKILLD G N+ ITN
Sbjct:   21 DLHKAVERGDTERAVALLSSKKFNVDEGGGSMGVTPLMIAIFKGNLRMVKILLDEGCNLSITN 83          
BLAST of mRNA_H-canaliculatus_F_contig11652.1459.1 vs. uniprot
Match: A0A366S5T6_9HYPO (NACHT domain-containing protein n=1 Tax=Fusarium coffeatum TaxID=231269 RepID=A0A366S5T6_9HYPO)

HSP 1 Score: 51.6 bits (122), Expect = 2.600e-5
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1
Query:    1 TNLHTAASQGLTDQTLALLAAGSIDIDSGTSLGRTPLMCAARHGHSHVVKILLDYGANVYITNGLEGTALH 213
            T LH ++  GL      LL  G  D++  T +G TP++ AA  GH   VK+LL+ GAN Y++N   G ALH
Sbjct:  524 TPLHHSSRHGLEHAVATLLGNGMQDVNELTRMGSTPIIMAAGTGHVPTVKLLLERGANPYLSNWY-GNALH 593          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11652.1459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G1Y7_ECTSI2.930e-955.36EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A093ZJC4_9PEZI2.800e-847.89Helo_like_N domain-containing protein n=2 Tax=uncl... [more]
UPI001923AC8E1.060e-644.9326S proteasome non-ATPase regulatory subunit 10-li... [more]
A0A6A3D1U5_HIBSY1.080e-644.93Putative WD-repeat protein n=4 Tax=Hibiscus syriac... [more]
A0A2P5BBF9_PARAD9.750e-643.48N-terminal acetyltransferase A, auxiliary subunit ... [more]
A0A0F3M9K2_ORITS9.960e-640.85Ankyrin repeat family protein n=1 Tax=Orientia tsu... [more]
A0A6A2YXY5_HIBSY1.810e-542.03PRA1 family protein E-like n=1 Tax=Hibiscus syriac... [more]
A0A6H5KQV0_9PHAE1.810e-544.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB07_ECTSI2.130e-546.03EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A366S5T6_9HYPO2.600e-542.25NACHT domain-containing protein n=1 Tax=Fusarium c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11652contigH-canaliculatus_F_contig11652:1584..1901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue3.9e-08
Seed eggNOG ortholog2880.D7G1Y7
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.285812-CDS-H-canaliculatus_F_contig11652:1583..19011622928857.285812-CDS-H-canaliculatus_F_contig11652:1583..1901Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11652 1584..1901 -
1696845591.196261-CDS-H-canaliculatus_F_contig11652:1583..19011696845591.196261-CDS-H-canaliculatus_F_contig11652:1583..1901Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11652 1584..1901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11652.1459.1prot_H-canaliculatus_F_contig11652.1459.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11652 1584..1901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11652.1459.1

>prot_H-canaliculatus_F_contig11652.1459.1 ID=prot_H-canaliculatus_F_contig11652.1459.1|Name=mRNA_H-canaliculatus_F_contig11652.1459.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=106bp
TNLHTAASQGLTDQTLALLAAGSIDIDSGTSLGRTPLMCAARHGHSHVVK
ILLDYGANVYITNGLEGTALHVSAAFGHVAVSKMLLKAGAPLNAVGGNSC
TPLHLA
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mRNA from alignment at H-canaliculatus_F_contig11652:1584..1901-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11652.1459.1 ID=mRNA_H-canaliculatus_F_contig11652.1459.1|Name=mRNA_H-canaliculatus_F_contig11652.1459.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=318bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11652:1584..1901- (Hapterophycus canaliculatus Oshoro5f female)
ACCAACCTGCATACTGCCGCTTCCCAAGGTTTGACCGACCAGACGCTTGC GCTGCTCGCGGCAGGATCGATTGACATTGATAGCGGGACATCGCTGGGCC GGACCCCTCTCATGTGCGCTGCCCGGCACGGTCACTCGCACGTTGTCAAG ATCCTCCTAGACTATGGCGCGAACGTCTACATAACGAACGGACTCGAGGG CACCGCCCTTCACGTTTCCGCTGCTTTCGGGCACGTGGCCGTTAGCAAGA TGCTGCTGAAGGCCGGTGCACCCCTCAACGCGGTAGGCGGAAATAGCTGC ACGCCGCTTCATCTTGCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11652:1584..1901-

>mRNA_H-canaliculatus_F_contig11652.1459.1 ID=mRNA_H-canaliculatus_F_contig11652.1459.1|Name=mRNA_H-canaliculatus_F_contig11652.1459.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=636bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11652:1584..1901- (Hapterophycus canaliculatus Oshoro5f female)
ACCAACCTGCATACTGCCGCTTCCCAAGGTTTGACCGACCAGACGCTTGC
GCTGCTCGCGGCAGGATCGATTGACATTGATAGCGGGACATCGCTGGGCC
GGACCCCTCTCATGTGCGCTGCCCGGCACGGTCACTCGCACGTTGTCAAG
ATCCTCCTAGACTATGGCGCGAACGTCTACATAACGAACGGACTCGAGGG
CACCGCCCTTCACGTTTCCGCTGCTTTCGGGCACGTGGCCGTTAGCAAGA
TGCTGCTGAAGGCCGGTGCACCCCTCAACGCGGTAGGCGGAAATAGCTGC
ACGCCGCTTCATCTTGCTACCAACCTGCATACTGCCGCTTCCCAAGGTTT
GACCGACCAGACGCTTGCGCTGCTCGCGGCAGGATCGATTGACATTGATA
GCGGGACATCGCTGGGCCGGACCCCTCTCATGTGCGCTGCCCGGCACGGT
CACTCGCACGTTGTCAAGATCCTCCTAGACTATGGCGCGAACGTCTACAT
AACGAACGGACTCGAGGGCACCGCCCTTCACGTTTCCGCTGCTTTCGGGC
ACGTGGCCGTTAGCAAGATGCTGCTGAAGGCCGGTGCACCCCTCAACGCG
GTAGGCGGAAATAGCTGCACGCCGCTTCATCTTGCT
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