mRNA_H-canaliculatus_F_contig11649.1452.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11649.1452.1
Unique NamemRNA_H-canaliculatus_F_contig11649.1452.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11649.1452.1 vs. uniprot
Match: D8LDU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU5_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 4.010e-29
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:    1 ECSRSSLSAAEQEQLDTYDNDMYLDEKCVDESATTSVVGCNFMGLGQECRSCYMTCHGATKYMGEYPEKVEAWGSDAIINFCDGAEVTVLADC 279
            EC  SSLS A QEQL  YD D+YL+  CV+  A+   V CN+MGLGQECR C+MTC GAT+Y+ ++ E++  WG DAI++FC  AEV +L +C
Sbjct:   24 ECIVSSLSDAAQEQLSMYDKDLYLEPDCVN-GASPMPVHCNYMGLGQECRGCFMTCDGATRYLDDFAEEISVWGVDAIVHFCPDAEVELLEEC 115
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BLAST of mRNA_H-canaliculatus_F_contig11649.1452.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.750e-24
Identity = 49/92 (53.26%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    4 CSRSSLSAAEQEQLDTYDNDMYLDEKCVDESATTSVVGCNFMGLGQECRSCYMTCHGATKYMGEYPEKVEAWGSDAIINFCDGAEVTVLADC 279
            CS  SL+ A+Q+QL  YDNDMYL++ CV++S T   +GCN+MGLGQECR C++TC GA  Y+ +  E +  +G DA+INFC  +EV+ LA+C
Sbjct:  584 CSMDSLNDADQQQLALYDNDMYLEDDCVNDS-TPLPLGCNYMGLGQECRGCFLTCAGALTYIDDKAEHILEYGEDAVINFCPQSEVSDLAEC 674
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BLAST of mRNA_H-canaliculatus_F_contig11649.1452.1 vs. uniprot
Match: A0A6H5KWI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWI6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.880e-16
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    4 CSRSSLSAAEQEQLDTYDNDMYLDEKCVDESATTSVVGCNFMGLGQECRSCYMTCHGATKYMGEYPEKVEAWGSDAIINFCDGAEVTVLADC 279
            CSR SL+  +Q+QL+ Y+NDMYL++ CV++S T   +GCN+MGLGQECR C++                   G DA+INFC  +EV+ LA+C
Sbjct:  489 CSRDSLNDVDQQQLNLYENDMYLEDDCVNDS-TPLPLGCNYMGLGQECRGCFLAL-------------AHVKGEDAVINFCPQSEVSDLAEC 566
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11649.1452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDU5_ECTSI4.010e-2954.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDU6_ECTSI2.750e-2453.26N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5KWI6_9PHAE1.880e-1645.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11649contigH-canaliculatus_F_contig11649:654..1700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.6231992-CDS-H-canaliculatus_F_contig11649:653..7191622928856.6231992-CDS-H-canaliculatus_F_contig11649:653..719Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11649 654..719 -
1696845590.791747-CDS-H-canaliculatus_F_contig11649:653..7191696845590.791747-CDS-H-canaliculatus_F_contig11649:653..719Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11649 654..719 -
1622928856.6371946-CDS-H-canaliculatus_F_contig11649:1481..17001622928856.6371946-CDS-H-canaliculatus_F_contig11649:1481..1700Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11649 1482..1700 -
1696845590.8007002-CDS-H-canaliculatus_F_contig11649:1481..17001696845590.8007002-CDS-H-canaliculatus_F_contig11649:1481..1700Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11649 1482..1700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11649.1452.1prot_H-canaliculatus_F_contig11649.1452.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11649 654..1700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11649.1452.1

>prot_H-canaliculatus_F_contig11649.1452.1 ID=prot_H-canaliculatus_F_contig11649.1452.1|Name=mRNA_H-canaliculatus_F_contig11649.1452.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
ECSRSSLSAAEQEQLDTYDNDMYLDEKCVDESATTSVVGCNFMGLGQECR
SCYMTCHGATKYMGEYPEKVEAWGSDAIINFCDGAEVTVLADCM*
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mRNA from alignment at H-canaliculatus_F_contig11649:654..1700-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11649.1452.1 ID=mRNA_H-canaliculatus_F_contig11649.1452.1|Name=mRNA_H-canaliculatus_F_contig11649.1452.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1047bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11649:654..1700- (Hapterophycus canaliculatus Oshoro5f female)
GAGTGCAGCAGGTCGTCTCTCTCCGCCGCCGAGCAGGAGCAGCTCGACAC
GTACGACAACGATATGTACTTGGACGAGAAATGCGTCGACGAGAGCGCTA
CAACTTCGGTTGTGGGGTGCAACTTCATGGGACTAGGCCAGGAGTGCAGA
AGCTGCTACATGACCTGCCACGGCGCGACGAAGTACATGGGTGAATATCC
CGAGAAGGTCGAAGCGTGGGTAAGTGAGGCAGCAGCGGCGAGCAGTAGCG
GTGCGGGCTTCATTAGGAAGGTTGAGTAGAATATTTTTGGCTTGCTGAAG
GCGTGCTTGGGCTGTCGTTAGCGTTCGTGCCGTCTGCCGCGTCTTTCGCT
AAGACGGGTTCGATTCAGATCTCCTTGTGCCCAGCACACTTGCGGATCAT
TGTATCCTGTTTGTTGGCCGGGATATGACGGTCGGGGATACGCACGAACA
GGACCACCACCGCGTGTTTGCGACCGGATCGGAATCCGAACACTCCCACG
GCGCCTGCTAATCCAAGCATTTCAAAAATGGTAGCCCGACATATGGCTCG
AAATATACACTAGTGGACCACGTACTTGTACGGGGTGAAGCTTTCAGTGT
CGTCACGCATAGGTGACATTGTTTTCTTTAAGGCGAACCCTATTTTCGAT
CGGATGTTTCTTTGAAATTGATCCGGGAGGTTAAAAACTAACCAGTTCGA
CACTGCAAAAATGTGAGTAAATCACCGCCATTCATTTGATTCCTTCAAGG
GCCATGTGTCTCTGACGCCATCTCTACGAGTGCACGAAAGCCACCCGATT
CCGAGAGAAAAACTTGACGTTCTTCTGGTCTTCGCAAGCCCAAGCAGGAG
AACGCGATAAGACGTAAACAGCGCTCGGCTAAATTTAGACGTTTTCTTCG
CCGTTTCTCGCCAAGCGAAAATCGTCCCACCGCCGCCATCGTCGCTGACA
GCCAAGCATCACCCTACACCCGTTTTGACAGGGTTCGGATGCGATCATCA
ACTTCTGCGATGGAGCCGAGGTCACCGTGCTGGCGGACTGCATGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11649:654..1700-

>mRNA_H-canaliculatus_F_contig11649.1452.1 ID=mRNA_H-canaliculatus_F_contig11649.1452.1|Name=mRNA_H-canaliculatus_F_contig11649.1452.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11649:654..1700- (Hapterophycus canaliculatus Oshoro5f female)
GAGTGCAGCAGGTCGTCTCTCTCCGCCGCCGAGCAGGAGCAGCTCGACAC
GTACGACAACGATATGTACTTGGACGAGAAATGCGTCGACGAGAGCGCTA
CAACTTCGGTTGTGGGGTGCAACTTCATGGGACTAGGCCAGGAGTGCAGA
AGCTGCTACATGACCTGCCACGGCGCGACGAAGTACATGGGTGAATATCC
CGAGAAGGTCGAAGCGTGGGAGTGCAGCAGGTCGTCTCTCTCCGCCGCCG
AGCAGGAGCAGCTCGACACGTACGACAACGATATGTACTTGGACGAGAAA
TGCGTCGACGAGAGCGCTACAACTTCGGTTGTGGGGTGCAACTTCATGGG
ACTAGGCCAGGAGTGCAGAAGCTGCTACATGACCTGCCACGGCGCGACGA
AGTACATGGGTGAATATCCCGAGAAGGTCGAAGCGTGGGGTTCGGATGCG
ATCATCAACTTCTGCGATGGAGCCGAGGTCACCGTGCTGGCGGACTGCAT
GTAAGGTTCGGATGCGATCATCAACTTCTGCGATGGAGCCGAGGTCACCG
TGCTGGCGGACTGCATGTAA
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