mRNA_H-canaliculatus_F_contig11640.1448.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11640.1448.1
Unique NamemRNA_H-canaliculatus_F_contig11640.1448.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11640.1448.1 vs. uniprot
Match: D8LF13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF13_ECTSI)

HSP 1 Score: 605 bits (1560), Expect = 2.620e-210
Identity = 322/512 (62.89%), Postives = 373/512 (72.85%), Query Frame = 1
Query:    1 QECAAALQAAFASSWHSLSAWLSVLALFLAPVLEFVAVLARAVWPHARRAATSLLRHQASLPRSTLFAEAACVVVFVGAVLLRRFIVRQRYLPRARRRVRLFRQRVNRAYVSFTASIERKFRLSARLFPHLVYWTAAGLFAWLAPEAAGHLRDNLWVLATTAWPTMYAIYLVLVLRSQHRSAGEDGVRAGGAGV-GTPGADSTSASVTRRTSARAPGAGTP--------------------ARAPGSGLARPGNVMAQDVDRVLMYWVVFTVASCWGWAADIVPENRLTPHVRTITFFVALWMHLPGPGSGLQVVYASLEPLVHKYVRDLRMPDNGHVGTLKSLRNVLVFARLLTEEHAEVLASNISDSWMLVPGLLCFFTPSFITRLGCLYVGLVVPAFNSIKTLGRRSNAE-LSDGWSALATSARSARVRWLTYWVAYGLWWHACWSLGWVLRVIPLVGHAQLAVLFWLQIPWFRGGFRLLEFGERCMDRWASSPVAVSAPLSPEQHLQQ 1470
            +E   A QAAF +SWHSLSAW SVL LFL+PVL+F+AVLARAVWPHA+ AA ++ ++QASLP STL AEAA VV+F+  VLLRRFIVRQRY+PRARRRVR FR R+N AY+SFTAS+ER  RLSAR FPH+VYWTAA  FAWLAP+  G LRD  WV AT  WPT+YA+YLVL++RSQ+    ED   AGG+ V GTP     + + TR T+A                            AR   SGLAR   VM QDVDRVLMYWVVFTVA CWG  A  VPE   TP+VRT+ FF+ALWMHLPGPGSGLQVVYA LEPLVH YV+DLRMP NG+ GTLK ++++LV  RLLTEE AE+L  NI+DSWMLVP L  F TPSF+T L CLY GLV+P+FNSIKTLGRRSN   +S  W+ALATSA SARVRWLTYWVAYG WWH    LG +LRV+PL  HA+LA+L WLQ+P FRGG R+L+FGERCMDRW       S P+ P    QQ
Sbjct:   38 KEFVLAFQAAFETSWHSLSAWFSVLTLFLSPVLQFLAVLARAVWPHAQTAAITVCKYQASLPASTLCAEAAAVVLFIALVLLRRFIVRQRYIPRARRRVRNFRARINTAYMSFTASVERNLRLSARAFPHVVYWTAAASFAWLAPDLTGSLRDKFWVFATATWPTLYAVYLVLLVRSQNAVNDEDS--AGGSSVNGTP-----AGAGTRGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAR---SGLARGAGVMPQDVDRVLMYWVVFTVARCWGLLAAYVPETFFTPYVRTVAFFLALWMHLPGPGSGLQVVYAWLEPLVHTYVKDLRMPQNGYTGTLKRVQDLLVLVRLLTEEKAELLVDNITDSWMLVPALAFFLTPSFMTELACLYAGLVIPSFNSIKTLGRRSNTSAVSTAWAALATSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVPLFRGGGRILDFGERCMDRWTFGSDVASTPVRPLTPPQQ 539          
BLAST of mRNA_H-canaliculatus_F_contig11640.1448.1 vs. uniprot
Match: A0A835ZEP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP2_9STRA)

HSP 1 Score: 248 bits (632), Expect = 5.880e-70
Identity = 163/475 (34.32%), Postives = 237/475 (49.89%), Query Frame = 1
Query:   40 SWHSLSAWLSVLALFLAPVLEFVAVLARAVWPHARRAATSLLRHQASLPRSTLFAEAACVVVFVGAVLLRRFIVRQRYLPRARRRVR----LFRQRVNRAYVSFTA---SIERKFRLSARLFPHLVYWTAAGLFAWLAPEAAGHLR-DNLWVLATTAWPTMYAIYLVLVLRSQHRSAG------EDGVRAGGAG---VGTPGADSTSASVTRRTSARAPGAGTPARAPGSGLARPGNVMAQDVDRVLMYWVVFTVASCWGWAADIVPE-NRLTP--------HVRTITFFVALWMHLPGPGSGLQVVYASLEPLVHKYVRDLRMPDNGH-VGTLKSLRNVLVFARLLTEEHAEVLASNISDSWMLVPGLLCFFTPSFITRLGCLYVGLVVPAFNSIKTLGRRSNAELSDGWSALATSARSARVRWLTYWVAYGLWWHACWSLGWVLRVIPLVGHAQLAVLFWLQIPWFRGGFRLL 1383
            +W SL  WL +  L L P +     +   +WP  R A   L R Q +   + +  EAA +   V  +LLRR+++R R LPRA+  +     L RQR + A  +F     S+ +K +L+A++ PH++YW  A   A L P     L     W   T  WP +  I L    R + RS        ++GV+ G       GTP       S   +  A          A   G   PG    ++VD  LMYW+VF +A C  +   +VP   RL           +R  T    +W+ LPG   G+ + YA +EPL+H+Y+R +R P     V   K+  + LV  R+L++E A ++A NI+DSWML+P  L  F+P F+ R GC+Y GL+VPA NS K L  R+        + +  S   AR RWLTYW  +G++W+   +L  +L  +P   HAQLA+L WLQ+P FRG + +L
Sbjct:   95 TWKSLVGWLRLAHLILKPFIGIANAIGMEIWPFVRAAGVGLARWQVTRSLTFILLEAALIGAVVAMLLLRRYMIRNRLLPRAQSWIEAKRALVRQRHDSAKAAFQQLQRSVAKKSKLAAQMLPHMLYWAVAAAAALLLPAHMAALSLGPAWEFVTVGWPILTTIMLA---RGRKRSGASPSAALDEGVKGGARPSIRAGTP-------SGKGKRGAXXXXXXXXQVAKPKGEEEPGG---RNVDEALMYWIVFALAQCCAYVLGLVPGVGRLVLSTGTGWGLQLRMWTMLAGIWLQLPGSAGGIHMAYALIEPLIHEYIRAVRPPGGADAVARSKNGLSFLVTLRILSQERASMIAENIADSWMLLPTPLLVFSPGFVVRGGCMYAGLLVPAINSAKALAHRN--------TLIDNSQGGARTRWLTYWAVFGMYWYFQIALASLLAWLPFANHAQLALLLWLQLPVFRGSYYVL 548          
BLAST of mRNA_H-canaliculatus_F_contig11640.1448.1 vs. uniprot
Match: A0A6H5K644_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K644_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.750e-36
Identity = 67/112 (59.82%), Postives = 80/112 (71.43%), Query Frame = 1
Query: 1120 LVVPAFNSIKTLGRRSN-AELSDGWSALATSARSARVRWLTYWVAYGLWWHACWSLGWVLRVIPLVGHAQLAVLFWLQIPWFRGGFRLLEFGERCMDRWASSPVAVSAPLSP 1452
            L+ P     KTLGRRSN + +S  W+ALATSA  ARVRWLTYWVAYG WWH    +G +LRV+PL  HA+LA+L WLQ+P FRGG R+L+FGERCMDRW       S P+ P
Sbjct:   21 LLAPIAALSKTLGRRSNNSAVSTAWAALATSANIARVRWLTYWVAYGSWWHLSLCVGGILRVLPLAAHAELALLLWLQVPLFRGGDRILDFGERCMDRWTFGSDVASTPVRP 132          
BLAST of mRNA_H-canaliculatus_F_contig11640.1448.1 vs. uniprot
Match: A0A7S2V8D4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8D4_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.740e-28
Identity = 80/233 (34.33%), Postives = 116/233 (49.79%), Query Frame = 1
Query:  706 AQDVDRVLMYWVVFTV-ASC---WGWAADIVPENRLTPHVRTITFFVALWMHLPGPGSGLQVVYASLEPLVHKYVRDLRMP--DNGHVGTLKSLRNVLVFARLLTEEHAEVLASNISDSWMLVPGLLCFFTPSFITRLGCLYVGLVVPAFNSIKTLGRRSNAELSDGWSALATSARSARVRWLTYWVAYGLWWHACWSLGWVLRVIPLVGHAQLAVLFWLQIPWFRGGFRLLE 1386
            A  + + LMYWV+F     C   W   A  +P+    P    + FF  +WM LP    G+ +++  LEPL+ KY++D++ P      +G LK    V V   L+++E    L SN+ DSW+LVP LL    PS  T    LY G  VPAFNSIK+L         +              RWL YW+ Y  +W    +L   L  +P + H  L ++ WLQ+P+FRG  R+++
Sbjct:    4 AGRLQQCLMYWVLFAAFVLCNYLWSTFAWRLPQM---PCGAEMVFFFFVWMQLPF--GGVSILFHQLEPLIRKYIKDIKRPIGKEESLGYLK----VAVTLGLISKERGHALVSNLLDSWLLVPALLGLTMPSPFTYAFSLYAGAAVPAFNSIKSLKAEQEGPNQE--------------RWLRYWMCYAPFWVVHLALDSHLWFVPFLYHFWLLLVMWLQLPYFRGAQRIVQ 213          
BLAST of mRNA_H-canaliculatus_F_contig11640.1448.1 vs. uniprot
Match: A0A6G0XFJ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XFJ3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.470e-14
Identity = 67/230 (29.13%), Postives = 106/230 (46.09%), Query Frame = 1
Query:  718 DRVLMYWVVF----TVASCWGWAADIVPENRLTPHVRTITFFVALWMHLPGPGSGLQVVYASLEPLVHKYVRDLRMPDNGHVGTLKSLRNVL-VFARL--LTEEHAEVLASNISDSWMLVPGLLCFFTPSFITRLGCLYVGLVVPAFNSIKTLGRRSNAELSDGWSALATSARSARVRWLTYWVAYGLWWHACWSLGWVLRVIPLVGHAQLAVLFWLQIPWFRGGFRLLE 1386
            +RVL  WV++    T  +C G     VP   + P +R  T ++ L+++      G Q +YA+L   +H Y   ++          +S   VL   A L  L+   A VL    S    L  GL+    P F+T++GC  VGL  PA+  +                +L ++ R  R  W+ Y+    L+ + C ++  +L  IPL+ HA+L  L WLQ P+FRG  R+ +
Sbjct:  290 ERVLKLWVLWSFYRTSVTCAGLFLAFVP-GFILPSMRPSTIYLNLFLNWIHSLKGDQKLYAALTSYMHPYATQIQTVQAAAAANSESSNLVLRTLASLGVLSTNTANVLRDLRSQGPALF-GLIFLVMPGFLTKVGCDLVGLAFPAYVVM---------------GSLLSNERRTREWWVCYFTVVALFEYWCDAISGILAWIPLIYHAKLLALVWLQFPYFRGAQRIFD 502          
BLAST of mRNA_H-canaliculatus_F_contig11640.1448.1 vs. uniprot
Match: M4BDE5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BDE5_HYAAE)

HSP 1 Score: 78.6 bits (192), Expect = 5.730e-12
Identity = 97/401 (24.19%), Postives = 164/401 (40.90%), Query Frame = 1
Query:  223 VFVGAVLLRRFIVRQRYLPRARRRVRLFRQRVNRAYVSFTASIERKFRLSARLFPHLVYWTAA-GLFAWLAPEAAGHLRDN-LWVLATTAWPTMYAIYLVLVLRSQHRSAGEDGVRAGGAGVGTPGADSTSAS---VTRRTSARAPGAGTPARAPGSGLARPGNVMAQDVDRVLMYWVVFTVASCWGWAADIVPENRLTPHVRTITFFV---ALWMHLPGPGSGLQVVYASLEPLVHKYV-----RDLRMPDNGHVGTLKSLRNVLVFARLLTEEHAEVLASNISDSWMLVPGLLCFFTPSFITRLGCLYVGLVVPAFNSIKTLGRRSNAELSDGWSALATSARSARVRWLTYWVAYGLWWHACWSLGWVLRVIPLVGHAQLAVLFWLQIPWFRGGFRLLE 1386
            +   AV+     VRQ Y+ +AR +    ++++   Y  F AS+  K+R+ A+L PH++++  +  +  WL       L  + L++L +  +P ++ I ++     +H+      V++       P A  +      VT+  +   PG               G   A +V   + YWV+++ A C      +     +T        F     LWMH      G   +Y  L PL+  Y      R+  +       T   +R  + F R++ E H   LA ++      + GL+  FTP F+   GCL +G   PA+ +I  L  +      + W A    A +A         A G        +GW    +PL  H +L V+ WLQ P+F+G  RL  
Sbjct:    8 LLAAAVIFAAVCVRQGYVHKARVQYYTTKRKLELRYRMFVASLSAKWRVVAKLLPHVLFFALSFEVLYWLPDSTTNVLGGSALFMLLSVGYPLLHTIRVI-----RHKRFNLKHVKS------APPASKSGRPRQLVTKFDNVCVPG---------------GEWRAYEV--CMKYWVIWSFAVCLTSILTLFLPAFVTSFCTVPLQFCNVFLLWMHSSFT-RGTIALYTLLSPLISPYASRLHEREATVDAEADEKTNFVIRLFVSF-RVVPERHVH-LAKDLWSQGPALFGLIFLFTPGFVACRGCLLMGFGFPAYVTIGVLSEKRTRRY-EWWLAYFCVAITANY----LMTAIGQ------EIGW----LPLFYHVKLLVMMWLQFPYFQGAERLFN 362          
BLAST of mRNA_H-canaliculatus_F_contig11640.1448.1 vs. uniprot
Match: A0A7S2FA21_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FA21_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.020e-8
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = 1
Query: 1075 FTPSFITRLGCLYVGLVVPAFNSIKTLGRRSNAELSDGWSALATSARSARVRWLTYWVAYGLWWHACWSLGW-----VLRVIPLVGHAQLAVLFWLQIPWFRGGFRLLEFG 1392
            FTP FITR+GCL VGLV PAF ++  + +  +++  D       +A  + +RWL YWV Y ++      LG      +L ++P   H  L  L WLQ+P+ RG   + E G
Sbjct:    5 FTPWFITRVGCLLVGLVYPAFCAVLLIHKAESSKEKD-------AASLSMIRWLKYWVVYAVYMSLGQELGRSSLNDLLFMVPQ-NHVNLVFLVWLQLPFCRGAPLVYEKG 107          
BLAST of mRNA_H-canaliculatus_F_contig11640.1448.1 vs. uniprot
Match: A0A7S0PT42_9CHLO (Hypothetical protein n=3 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PT42_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 1.520e-5
Identity = 51/180 (28.33%), Postives = 83/180 (46.11%), Query Frame = 1
Query:  868 GLQVVYASLEPLVHKYVRDLRMPDNGHVGTLK-----SLRNVL---VFARLLTEEHAEVLASNISD--SWMLVPGLLCFFTPSFITRLGCLYVGLVVPAFNSIKTLGRRSNAELSDGWSALATSARSARVRW-------LTYWVAYGLWWHACWSLGW-VLRVIPLVGHAQLAVLFWLQI 1353
            G +++  +  PLV + +    +  +G +G L+     S+R  L   VF      + A      + D  S+ LV   + FFTP  +T  GC   GLV+P   +I +L      + +   ++ A   +    R        LTYW+A+ + W     L    LR +PL+ HAQLA ++WLQ+
Sbjct:  346 GSELIVDAATPLVSRAMAYANV-SSGAMGQLRTVVRASVRQTLQIGVFVMRFRSKRASDALRLVLDNMSFPLVTCTIFFFTPGLMTVYGCDIAGLVIPFIFTIDSLNEYYKFKATPEVASRAEMRKETEKRHEDKLRNLLTYWLAHAMIWSLSQELSTSALRWVPLLRHAQLAGIYWLQV 524          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11640.1448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LF13_ECTSI2.620e-21062.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZEP2_9STRA5.880e-7034.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5K644_9PHAE4.750e-3659.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V8D4_9STRA2.740e-2834.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6G0XFJ3_9STRA7.470e-1429.13Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
M4BDE5_HYAAE5.730e-1224.19Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7S2FA21_9STRA2.020e-836.94Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0PT42_9CHLO1.520e-528.33Hypothetical protein n=3 Tax=Ostreococcus mediterr... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11640contigH-canaliculatus_F_contig11640:241..3939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score387.1
Seed ortholog evalue8.1e-105
Seed eggNOG ortholog2880.D8LF13
EggNOG free text desc.TB2/DP1, HVA22 family
EggNOG OGs28M3K@1,2QTKE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTB2/DP1/HVA22-related protein
Ec32 orthologEc-21_006310.1
Exons4
Model size1743
Cds size978
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11640.1448.1prot_H-canaliculatus_F_contig11640.1448.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11640 511..3444 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.2130375-UTR-H-canaliculatus_F_contig11640:240..5101622928856.2130375-UTR-H-canaliculatus_F_contig11640:240..510Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11640 241..510 -
1696845590.5622873-UTR-H-canaliculatus_F_contig11640:240..5101696845590.5622873-UTR-H-canaliculatus_F_contig11640:240..510Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11640 241..510 -
1622928856.2958274-UTR-H-canaliculatus_F_contig11640:3444..39391622928856.2958274-UTR-H-canaliculatus_F_contig11640:3444..3939Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11640 3445..3939 -
1696845590.632711-UTR-H-canaliculatus_F_contig11640:3444..39391696845590.632711-UTR-H-canaliculatus_F_contig11640:3444..3939Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11640 3445..3939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.2255378-CDS-H-canaliculatus_F_contig11640:510..8341622928856.2255378-CDS-H-canaliculatus_F_contig11640:510..834Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11640 511..834 -
1696845590.5807219-CDS-H-canaliculatus_F_contig11640:510..8341696845590.5807219-CDS-H-canaliculatus_F_contig11640:510..834Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11640 511..834 -
1622928856.2418513-CDS-H-canaliculatus_F_contig11640:1695..18271622928856.2418513-CDS-H-canaliculatus_F_contig11640:1695..1827Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11640 1696..1827 -
1696845590.5979338-CDS-H-canaliculatus_F_contig11640:1695..18271696845590.5979338-CDS-H-canaliculatus_F_contig11640:1695..1827Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11640 1696..1827 -
1622928856.2628415-CDS-H-canaliculatus_F_contig11640:2118..22591622928856.2628415-CDS-H-canaliculatus_F_contig11640:2118..2259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11640 2119..2259 -
1696845590.609748-CDS-H-canaliculatus_F_contig11640:2118..22591696845590.609748-CDS-H-canaliculatus_F_contig11640:2118..2259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11640 2119..2259 -
1622928856.2788734-CDS-H-canaliculatus_F_contig11640:3063..34441622928856.2788734-CDS-H-canaliculatus_F_contig11640:3063..3444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11640 3064..3444 -
1696845590.6204734-CDS-H-canaliculatus_F_contig11640:3063..34441696845590.6204734-CDS-H-canaliculatus_F_contig11640:3063..3444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11640 3064..3444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11640.1448.1

>prot_H-canaliculatus_F_contig11640.1448.1 ID=prot_H-canaliculatus_F_contig11640.1448.1|Name=mRNA_H-canaliculatus_F_contig11640.1448.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=326bp
MYAIYLVLVLRSQHRSAGEDGVRAGGAGVGTPGADSTSASVTRRTSARAP
GAGTPARAPGSGLARPGNVMAQDVDRVLMYWVVFTVASCWGWAADIVPEN
RLTPHVRTITFFVALWMHLPGPGSGLQVVYASLEPLVHKYVRDLRMPDNG
HVGTLKSLRNVLVFARLLTEEHAEVLASNISDSWMLVPGLLCFFTPSFIT
RLGCLYVGLVVPAFNSIKTLGRRSNAELSDGWSALATSARSARVRWLTYW
VAYGLWWHACWSLGWVLRVIPLVGHAQLAVLFWLQIPWFRGGFRLLEFGE
RCMDRWASSPVAVSAPLSPEQHLQQ*
back to top

mRNA from alignment at H-canaliculatus_F_contig11640:241..3939-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11640.1448.1 ID=mRNA_H-canaliculatus_F_contig11640.1448.1|Name=mRNA_H-canaliculatus_F_contig11640.1448.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3699bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11640:241..3939- (Hapterophycus canaliculatus Oshoro5f female)
CAGGAATGTGCCGCGGCGCTCCAGGCGGCGTTCGCGTCCTCCTGGCACTC CCTGTCCGCCTGGCTTTCAGTCCTCGCGCTCTTCCTGGCGCCCGTTCTCG AGTTCGTGGCCGTGCTCGCGCGAGCAGTGTGGCCCCACGCACGCAGGGCG GCGACCAGCCTCTTGAGGCACCAGGCGTCGCTGCCCCGCTCCACATTGTT CGCAGAGGCGGCCTGTGTAGTCGTCTTCGTCGGAGCGGTGCTCCTCCGCC GTTTCATCGTGCGGCAGCGCTATCTGCCCCGGGCGCGGCGGCGAGTGCGC CTCTTCCGCCAGCGGGTGAACCGCGCCTACGTCTCCTTCACGGCGTCCAT CGAGCGCAAGTTCCGTCTCTCGGCCCGCCTGTTCCCTCACTTGGTGTATT GGACCGCGGCCGGCTTGTTCGCGTGGCTGGCCCCCGAGGCCGCAGGTCAC CTCCGCGACAATCTGTGGGTGTTGGCGACGACCGCGTGGCCCACGATGTA CGCAATCTACCTCGTCCTCGTGCTCAGGAGTCAGCACCGGTCCGCCGGCG AGGACGGTGTGCGGGCAGGAGGGGCTGGTGTTGGTACCCCCGGTGCTGAC AGCACAAGCGCCTCCGTTACTCGAAGGACTTCCGCGAGGGCACCAGGAGC GGGCACACCGGCTAGAGCTCCAGGGTCGGGGCTTGCGCGCCCAGGCAACG TGATGGCACAAGACGTGGACCGGGTCCTGATGTATTGGGTGGTTTTTACC GTGGCGAGCTGCTGGGGCTGGGCGGCCGACATCGTCCCGGAGAACAGGCT AACGCCGCACGTACGGACGATCACGTTTTTCGTGGCTCTGTGGATGCACC TCCCAGGGCCCGGGAGTGGGCTGCAGGTAATGCGATGCGATGCGATGCGA TGCGGTGCCTTTGTGTCAGTGCAGGCATCGGCACGTCTCGCTCTTTTCTT GCACATGCTTGCATGGTAAATGCCTTCAGGGGTAGTTTGTGCTCTTGCAC TCTTGTATCTTGTACTGTACTGTACTGTACGGACGCGGGAAAAGAACTAA ATATCATAGAAACGTGTGGCAGCGTTACGGCATGGCTCGGGTCGTGTGTG CGTTCTTTTTTTCATCTCTGTCGCCGAAATTGGCGGTTATTTCACGTGTG TTGGTCCTGTCAGTCTGCCTGTCTGCGGTCAAGCAGTGTTGACATACTGC TTCATTTTGTTGTTGCGCATCCATTAGTGCTTTACGTCTGCAATGTGACA CCTGTGCCGAACAAGACTAAGATATCATAGTGTCTCGCGAGGCGTGCAAG CAGTGTTTCAGGCCAAGCTGAAATGGAGTGATCTACGTCAATTATGTTCC GCGACTGCGAGTTTCCGATTGACCAGGTGTGATGAAACTTGCCGTGCTTG CTAGGCACATGTTGGGAGGCTTTTCGTTTTTTGCTGCGTTGGCGCGACAA AACCAAGATCGAAATCAAGATCAAACCCTGCAGAAATAGAACACATACAT CTGTATACCGTGTGTTGATACCACAATATTGTGCATGACATGGTCGCGAC ACTGCTCCCCGGAGAGCTCAGTTTGCGGCGGCGTTAACGGCGGGGTTGAC GTCCGTCGTTGACGTTCGTTGTTGACGTTCGTCGTTGGTCTCATCTATGT ATACTCCCGCCCGACCCCCAAAATCTGCAGGTGGTGTACGCCTCGCTGGA ACCCCTGGTGCATAAGTACGTGCGGGACCTCCGCATGCCAGACAATGGCC ACGTCGGAACCCTCAAGAGCCTTCGAAATGTGCTGGTTTTCGCTCGGCTG CTCACCGAGGAACACGCAGAGGTGATGCATACATGGAAACGCTACCGAGC TCGTGACGTGCACTTCGTTCGGACATACTTCATGCAGATGTGGGCGGGGG GTTGCAACTATTGTTGGCGTTGGTTGATGGTCCATACCTCCGTATGGCCA GGGAGTCGAGTTCAACGAGTGGGAATTGTTCGTGTTTGTCGGCCGTGCAT GCGGGAGAGAGGGTGCAAGGAAAAGGACTCACTGCGTGTGGCGGCGGCAC CACCTGAGCAAAGGAATGGAGTGCTGGCACACAAGTAACCTAACCCCTGT CTGCGCGGACAGGTGCTCGCCAGCAATATATCCGACAGCTGGATGCTTGT GCCAGGATTGCTGTGCTTCTTCACGCCGTCCTTCATCACCAGGCTCGGCT GCCTGTACGTTGGACTGGTGGTTCCCGCCTTCAACTCCATAAAGGTGAGG TAGAATTTCATGTAATATCGTACTTTTGAGTACATCAAAGTGTACGTCAT GAGATCAGCCATGCGTTAATCTAGACCCTAGCAAAACGAAAAATAGTTCC TCTGATGAGATATCAAGCAAGTGAATGAGTCACTGCGGTCCAGTACTTGG TATTGCCCGTCCCGAAAGCATCTCAGTGACGGAGCCGAAAGAAGCAGGCT GGGGCCAGGACGGTAAGGTGCATGCAGGTGACTATCCTCACCAGTTTAAG AAGTTGTTTTGTCGACGATATTACCAAAAAACTGTACATTTCTTTGTTTC GCTTGATTTTCCTGCCATGCGCCGTGTGTTGTTGGGTCAAACTGCGACGA CAGGGAGTCTTATTCCGAAGTCTTCATACTCCGGAGTAGTTGATAATTCA ACGTACTTGATCCTTGATGCTCGTTCTACTGAATAATCAAGTTTTTTTCT GCGGGGACCTGAAATCGTGTCAAATGTAAAGGCAGCAATGTCTGCAACTA TGCTACATTAGTTCCATGTCAATCTTGCGGGTGGTGACATGCAAGTTGTT CATAGGTGTGTCGCACAGGGGCGTCATGCCATTGATACTTGCGATCGACG TCATGGGTGTTTCCATGACGCGAGGCTCGTTTCACATCCAAGTATGTAGT ACCGTATCGCGCCACAGTCAACCCGGTCGAAATGTGAGCTTAAGACCACA CACCACGAGGTGTCAAAATGACTTCCTTCAGCACGTGTTCTGCGTTGGTT TCATGGGAACACGATGCATTTTGAAATTTTTTGCATCTTCTTTATCTCTC CCGCCCCACCTTTACCACTCCATCCCTGATTGTTGCATGCTGCATGGGTT TCAAGACTCTTGGTCGCAGGTCGAACGCGGAACTCTCAGATGGGTGGTCG GCGCTAGCAACCTCGGCTCGGAGTGCACGGGTCCGATGGCTCACCTACTG GGTTGCGTACGGTCTCTGGTGGCACGCGTGTTGGTCCTTAGGCTGGGTGC TCAGGGTGATCCCTCTCGTCGGCCATGCCCAGCTGGCAGTGTTGTTTTGG CTGCAGATACCGTGGTTCAGAGGGGGATTTCGTCTGTTGGAGTTTGGGGA ACGGTGCATGGACAGGTGGGCGTCTAGTCCCGTCGCCGTAAGCGCCCCGC TGTCGCCCGAGCAGCACTTGCAGCAATAGAAGTTCGTCCTATTCCGTGGA ATGATCCGGGGATCACTGACACCACTATCCTGGAGTCGTGGATTTCGGAT CGAAGTATCTTTGCAGTTCGTGCTTGCAGTGCCTGCTGTGACGTACGCGA TGAAATCTATCTTGTAGATTTAGTTGTACTACTATGGTCGTCTCTGCGAA TGTACAGTAAACCACACCACCTCAAAGAGGTGCTGTTGGGTTAGTCTAAC TCACACCGCCATCACGCACGTAGGTTCGCAACAGCGTGACGCTGACCCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11640:241..3939-

>mRNA_H-canaliculatus_F_contig11640.1448.1 ID=mRNA_H-canaliculatus_F_contig11640.1448.1|Name=mRNA_H-canaliculatus_F_contig11640.1448.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1956bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11640:241..3939- (Hapterophycus canaliculatus Oshoro5f female)
ATGTACGCAATCTACCTCGTCCTCGTGCTCAGGAGTCAGCACCGGTCCGC
CGGCGAGGACGGTGTGCGGGCAGGAGGGGCTGGTGTTGGTACCCCCGGTG
CTGACAGCACAAGCGCCTCCGTTACTCGAAGGACTTCCGCGAGGGCACCA
GGAGCGGGCACACCGGCTAGAGCTCCAGGGTCGGGGCTTGCGCGCCCAGG
CAACGTGATGGCACAAGACGTGGACCGGGTCCTGATGTATTGGGTGGTTT
TTACCGTGGCGAGCTGCTGGGGCTGGGCGGCCGACATCGTCCCGGAGAAC
AGGCTAACGCCGCACGTACGGACGATCACGTTTTTCGTGGCTCTGTGGAT
GCACCTCCCAGGGCCCGGGAGTGGGCTGCAGATGTACGCAATCTACCTCG
TCCTCGTGCTCAGGAGTCAGCACCGGTCCGCCGGCGAGGACGGTGTGCGG
GCAGGAGGGGCTGGTGTTGGTACCCCCGGTGCTGACAGCACAAGCGCCTC
CGTTACTCGAAGGACTTCCGCGAGGGCACCAGGAGCGGGCACACCGGCTA
GAGCTCCAGGGTCGGGGCTTGCGCGCCCAGGCAACGTGATGGCACAAGAC
GTGGACCGGGTCCTGATGTATTGGGTGGTTTTTACCGTGGCGAGCTGCTG
GGGCTGGGCGGCCGACATCGTCCCGGAGAACAGGCTAACGCCGCACGTAC
GGACGATCACGTTTTTCGTGGCTCTGTGGATGCACCTCCCAGGGCCCGGG
AGTGGGCTGCAGGTGGTGTACGCCTCGCTGGAACCCCTGGTGCATAAGTA
CGTGCGGGACCTCCGCATGCCAGACAATGGCCACGTCGGAACCCTCAAGA
GCCTTCGAAATGTGCTGGTTTTCGCTCGGCTGCTCACCGAGGAACACGCA
GAGGTGGTGTACGCCTCGCTGGAACCCCTGGTGCATAAGTACGTGCGGGA
CCTCCGCATGCCAGACAATGGCCACGTCGGAACCCTCAAGAGCCTTCGAA
ATGTGCTGGTTTTCGCTCGGCTGCTCACCGAGGAACACGCAGAGGTGCTC
GCCAGCAATATATCCGACAGCTGGATGCTTGTGCCAGGATTGCTGTGCTT
CTTCACGCCGTCCTTCATCACCAGGCTCGGCTGCCTGTACGTTGGACTGG
TGGTTCCCGCCTTCAACTCCATAAAGGTGCTCGCCAGCAATATATCCGAC
AGCTGGATGCTTGTGCCAGGATTGCTGTGCTTCTTCACGCCGTCCTTCAT
CACCAGGCTCGGCTGCCTGTACGTTGGACTGGTGGTTCCCGCCTTCAACT
CCATAAAGACTCTTGGTCGCAGGTCGAACGCGGAACTCTCAGATGGGTGG
TCGGCGCTAGCAACCTCGGCTCGGAGTGCACGGGTCCGATGGCTCACCTA
CTGGGTTGCGTACGGTCTCTGGTGGCACGCGTGTTGGTCCTTAGGCTGGG
TGCTCAGGGTGATCCCTCTCGTCGGCCATGCCCAGCTGGCAGTGTTGTTT
TGGCTGCAGATACCGTGGTTCAGAGGGGGATTTCGTCTGTTGGAGTTTGG
GGAACGGTGCATGGACAGGTGGGCGTCTAGTCCCGTCGCCGTAAGCGCCC
CGCTGTCGCCCGAGCAGCACTTGCAGCAATAGACTCTTGGTCGCAGGTCG
AACGCGGAACTCTCAGATGGGTGGTCGGCGCTAGCAACCTCGGCTCGGAG
TGCACGGGTCCGATGGCTCACCTACTGGGTTGCGTACGGTCTCTGGTGGC
ACGCGTGTTGGTCCTTAGGCTGGGTGCTCAGGGTGATCCCTCTCGTCGGC
CATGCCCAGCTGGCAGTGTTGTTTTGGCTGCAGATACCGTGGTTCAGAGG
GGGATTTCGTCTGTTGGAGTTTGGGGAACGGTGCATGGACAGGTGGGCGT
CTAGTCCCGTCGCCGTAAGCGCCCCGCTGTCGCCCGAGCAGCACTTGCAG
CAATAG
back to top