mRNA_H-canaliculatus_F_contig11637.1443.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11637.1443.1
Unique NamemRNA_H-canaliculatus_F_contig11637.1443.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11637.1443.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 6.530e-12
Identity = 43/74 (58.11%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 MRVPGAAVALVGSHVDQMTGEEAAQAIVDLHT---------------VATNFIQEKASNAARTQSIRRIDAEST 177
            MRVPGAAVALVGSHVDQM  E+A QA   LHT               V + FI++KA NA+R QSIR IDAEST
Sbjct:  394 MRVPGAAVALVGSHVDQMESEDARQAETHLHTGEASWFFRGRVPCSLVVSKFIKDKAGNASRRQSIRCIDAEST 467
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11637.1443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKS5_ECTSI6.530e-1258.11LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11637contigH-canaliculatus_F_contig11637:903..1389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size181
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928855.887808-CDS-H-canaliculatus_F_contig11637:902..9851622928855.887808-CDS-H-canaliculatus_F_contig11637:902..985Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11637 903..985 -
1696845590.4265654-CDS-H-canaliculatus_F_contig11637:902..9851696845590.4265654-CDS-H-canaliculatus_F_contig11637:902..985Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11637 903..985 -
1622928855.901387-CDS-H-canaliculatus_F_contig11637:1292..13891622928855.901387-CDS-H-canaliculatus_F_contig11637:1292..1389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11637 1293..1389 -
1696845590.43643-CDS-H-canaliculatus_F_contig11637:1292..13891696845590.43643-CDS-H-canaliculatus_F_contig11637:1292..1389Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11637 1293..1389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11637.1443.1prot_H-canaliculatus_F_contig11637.1443.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11637 903..1389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11637.1443.1

>prot_H-canaliculatus_F_contig11637.1443.1 ID=prot_H-canaliculatus_F_contig11637.1443.1|Name=mRNA_H-canaliculatus_F_contig11637.1443.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=60bp
MRVPGAAVALVGSHVDQMTGEEAAQAIVDLHTVATNFIQEKASNAARTQS
IRRIDAESTT
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mRNA from alignment at H-canaliculatus_F_contig11637:903..1389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11637.1443.1 ID=mRNA_H-canaliculatus_F_contig11637.1443.1|Name=mRNA_H-canaliculatus_F_contig11637.1443.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=487bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11637:903..1389- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCGTTCCTGGCGCGGCCGTAGCTCTCGTGGGGTCCCACGTAGACCA
GATGACGGGGGAGGAAGCTGCCCAAGCCATTGTCGACCTTCACACCGGTA
AGACGATGTTGTGTTGCAAGCGAATGCTCTTGAAGAACTGCTTCTTGTTC
GAGCTTGGGCTGGAAGCCGTTTACATGCTGCAGGCGGGGGTGTATGAAAG
CAGGAACGACGTATTGGCGCTGTTTGTTCTCTAGGTTGACGGAAGATAGG
GGAGCCCTGAAGATGTCTTGTGGTTGTGGGGTTCAACTTGTCGAACCCGA
GCAAGATATGGTATCAGCGTTCCACCGTTCACAATGGATATGCCCGTAAT
AATTGTGGGCAACATCTTCCCAACGACCACGCCCCACTGTCTGTCCTATT
GTAGTTGCGACCAACTTCATTCAGGAAAAGGCCAGCAATGCAGCAAGGAC
GCAGAGTATTCGCCGCATCGACGCAGAGTCCACGACG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11637:903..1389-

>mRNA_H-canaliculatus_F_contig11637.1443.1 ID=mRNA_H-canaliculatus_F_contig11637.1443.1|Name=mRNA_H-canaliculatus_F_contig11637.1443.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=360bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11637:903..1389- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGCGTTCCTGGCGCGGCCGTAGCTCTCGTGGGGTCCCACGTAGACCA
GATGACGGGGGAGGAAGCTGCCCAAGCCATTGTCGACCTTCACACCGATG
CGCGTTCCTGGCGCGGCCGTAGCTCTCGTGGGGTCCCACGTAGACCAGAT
GACGGGGGAGGAAGCTGCCCAAGCCATTGTCGACCTTCACACCGTTGCGA
CCAACTTCATTCAGGAAAAGGCCAGCAATGCAGCAAGGACGCAGAGTATT
CGCCGCATCGACGCAGAGTCCACGACGTTGCGACCAACTTCATTCAGGAA
AAGGCCAGCAATGCAGCAAGGACGCAGAGTATTCGCCGCATCGACGCAGA
GTCCACGACG
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