mRNA_H-canaliculatus_F_contig11632.1441.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11632.1441.1
Unique NamemRNA_H-canaliculatus_F_contig11632.1441.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11632.1441.1 vs. uniprot
Match: D8LSD1_ECTSI (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD1_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 1.420e-127
Identity = 199/226 (88.05%), Postives = 208/226 (92.04%), Query Frame = 1 
Query:    1 GFVVSIPLIMLTMLEQQLFLARNQRRMSRPGNSGGLSSILIRLDCAWLLLLMGIHVRADGLTERSLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINRQHRASAVQALAEAAERARELEMFVAMAPEGTRTKTGQLGPFKKGALHMQEQLQCPVIPVTIRGGYELFPLKWNFNQCGKVVVKYHKPIEAAEIKSRDGLSRRLRQ 678
            GFVVSIPLIMLTM+EQQ+FLA N       GNSGGLSSILIRLDCAWLLLLMGI VRA+ + E SLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINR HRASAVQALAEAAERAREL+MFVAMAPEGTR+KTGQLGPFKKGA HMQEQLQ PVIPVTI G YELFPLKWN NQCGKVVVKYH+PIEAAEIKSR+GLS+RLRQ
Sbjct:   93 GFVVSIPLIMLTMVEQQIFLALNGGSNGGAGNSGGLSSILIRLDCAWLLLLMGIQVRAEFMGE-SLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINRGHRASAVQALAEAAERARELQMFVAMAPEGTRSKTGQLGPFKKGAFHMQEQLQWPVIPVTIHGAYELFPLKWNVNQCGKVVVKYHRPIEAAEIKSREGLSQRLRQ 317
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11632.1441.1 vs. uniprot
Match: A0A6H5L1M9_9PHAE (PlsC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1M9_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 7.980e-81
Identity = 143/204 (70.10%), Postives = 150/204 (73.53%), Query Frame = 1 
Query:    1 GFVVSIPLIMLTMLEQQLFLARNQRRMSRPGNSGGLSSILIRLDCAWLLLLMGIHVRADGLTERSLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINRQHRASAVQALAEAAERARELEMFVAMAPEGTRTKTGQLGPFKKGALHMQEQLQCPVIPVTIRGGYELFPLKWNFNQCGKVVVK 612
            GFVVSIPLIMLTM+EQQ+FLA N       GNSGGLSSILIRLDCAWLLLLMGI VRA+ + E SLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINR HRASAVQ                                   GA HMQEQLQ PVIPVTI G YELFPLKWN NQCGK +++
Sbjct:  112 GFVVSIPLIMLTMVEQQIFLALNGGSNGGAGNSGGLSSILIRLDCAWLLLLMGIQVRAEFMGE-SLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINRGHRASAVQ-----------------------------------GAFHMQEQLQWPVIPVTIHGAYELFPLKWNVNQCGKEILE 279
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11632.1441.1 vs. uniprot
Match: A0A835YU14_9STRA (PlsC domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU14_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.090e-36
Identity = 81/219 (36.99%), Postives = 128/219 (58.45%), Query Frame = 1 
Query:   10 VSIPLIMLTMLEQQLFLARNQRRMSRPGNSGGLSSILIRLDCAWLLLLMGIHVRADG----LTERSLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINRQHRASAVQALAEAAERARELEMFVAMAPEGTRTKTGQLGPFKKGALHMQEQLQCPVIPVTIRGGYELFPLKWN-----FNQCGKVVVKYHKPIEAAE 639
            V++PL++LT LE ++          R      LS+   R+   W+LL+ G+ VR +G      ER   +PA+++FTH S LD +++L   P    A+VK  + AVP LGW+  + G +PI+R  R +AV ++  A E  + +   +A++PEGTR++TGQL PFKKGA H+ +QL+ P++P+TI G + L+P +       + + G V V+YH  I   E
Sbjct:    3 VAVPLVLLTKLESEIIALGLGPPFPR------LSTGAKRILAQWMLLVTGVRVRVEGRGGEFKER-FQKPALIMFTHASNLDPLIMLSAHPCGFRAIVKHSIFAVPYLGWLAMAFGCVPIDRSRRDAAVASMTAAGEECQRVGYSLAVSPEGTRSRTGQLRPFKKGAFHLAQQLRWPMLPLTIHGAFALWPPRAARAGALYARPGTVGVRYHALIRVGE 214
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BLAST of mRNA_H-canaliculatus_F_contig11632.1441.1 vs. uniprot
Match: A0A2A4Z296_9FLAO (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2A4Z296_9FLAO)

HSP 1 Score: 113 bits (282), Expect = 3.550e-27
Identity = 64/166 (38.55%), Postives = 99/166 (59.64%), Query Frame = 1 
Query:  142 LLLLMGIHVRADGLTERSLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINRQHRASAVQALAEAAERARELEMFVAMAPEGTRTKTGQLGPFKKGALHMQEQLQCPVIPVTIRGGYELFPLKWNFNQCGKVVVKYHKPIEAAE 639
            ++ ++GI ++  G+      +P + +  H S LD +V+  +LP  L  + K+EL  VP++GW M   G I I+R ++  AV++L +AA + +  +  V M PEGTRTKTG LGPFKKGA H+       ++P+ I G Y ++P K      G VVV+  KPIEA++
Sbjct:   46 VMKIVGIKLKVHGVENVPTDKPVIFVANHCSHLDIIVLCRSLPVNLHFIGKKELAWVPIVGWYMFIAGHIFIDRSNKRKAVESLKKAAVKIKNGKRVV-MYPEGTRTKTGALGPFKKGAFHLALDAGVSIVPIHIDGTYNVWPAKSRTITPGDVVVRIGKPIEASK 210
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11632.1441.1 vs. uniprot
Match: A0A3P3Y9V1_PLABS (1-acyl-sn-glycerol-3-phosphate acyltransferase n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y9V1_PLABS)

HSP 1 Score: 116 bits (291), Expect = 3.940e-27
Identity = 68/180 (37.78%), Postives = 99/180 (55.00%), Query Frame = 1 
Query:  139 WLLLLMGIHVRADGLTERSLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINRQHRASAVQALAEAAERARELEMFVAMAPEGTRTKTGQLGPFKKGALHMQEQLQCPVIPVTIRGGYELFPLKWNFNQCGKVVVKYHKPIEAAEIKSRDGLSRRLRQ 678
            W  L +G+ VR  G TE+   RP + +F+H S LD + +    P  L  + K  L  VP++GW+ A  G IPI+RQ R  A+++L   A         + +APEGTR+ TG L  FKKG  HM  + + PV+PV I   Y+L P +    + G V V+   PI  ++  + +GLSR +RQ
Sbjct:  171 WAALCLGLQVRVIG-TEKLPCRPYLFMFSHGSMLDPIALGAISPVPLRFIGKRVLFMVPIIGWLFALYGHIPIDRQSRTDAIESLKAGARLMVRSGASIGIAPEGTRSLTGHLQSFKKGPFHMAIRTRMPVVPVIIEDAYQLLPPRRWLPRPGCVTVRALSPIAVSDQDTVEGLSRTVRQ 349
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11632.1441.1 vs. uniprot
Match: A0A5C6RRA9_9FLAO (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Vicingus serpentipes TaxID=1926625 RepID=A0A5C6RRA9_9FLAO)

HSP 1 Score: 108 bits (271), Expect = 1.460e-25
Identity = 63/165 (38.18%), Postives = 97/165 (58.79%), Query Frame = 1 
Query:  142 LLLLMGIHVRADGLTERSLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINRQHRASAVQALAEAAERARELEMFVAMAPEGTRTKTGQLGPFKKGALHMQEQLQCPVIPVTIRGGYELFPLKWNFNQCGKVVVKYHKPIEAA 636
            LL + GI +  +G     L RP + +  H S LD   +  +LP  L  + K+EL  VP++GW M   G I I+R ++  A+++L  A+++ +  +  V M PEGTR+K G+LG FKKGA H+  Q   P++PV+I+G Y ++P   N    G V V+  KPIE++
Sbjct:   45 LLWIAGIKLEVNGKENVPLDRPVIFIANHCSHLDIGTLCRSLPVNLHFIGKKELAWVPIVGWYMWVAGHIFIDRSNKKKAIKSLEVASQKIKSGKSVV-MYPEGTRSKNGKLGNFKKGAFHLAMQSGVPIVPVSIKGTYNVWPANSNKITPGNVSVEIGKPIESS 208
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11632.1441.1 vs. uniprot
Match: A0A7C2SD30_9DELT (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C2SD30_9DELT)

HSP 1 Score: 108 bits (269), Expect = 5.470e-25
Identity = 65/181 (35.91%), Postives = 95/181 (52.49%), Query Frame = 1 
Query:  139 WLLLLMGIHVRADGLTERSLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINRQHRASAVQALAEAAERARELEMFVAMAPEGTRTKTGQLGPFKKGALHMQEQLQCPVIPVTIRGGYELFPLKWNFNQCGKVVVKYHKPIEAA--EIKSRDGLSRRLR 675
            W+    GI V A+GL      R  + +  H S LD   I+ TLP +   V K EL  +P+ GW +   G + I+R  R  AV +L  AA R R     V + PEGTR++TG + PFK G  H+  + Q P++P+T+ G + L P +    + G + V Y KPIE     ++ R+ L  R+R
Sbjct:   68 WIFATCGITVEAEGLENVDARRAHVFMSNHQSVLDIGAIVATLPVSWRFVAKRELTWIPLFGWALRLGGHVIIDRGRRERAVASLQRAARRIR-AGTSVIIFPEGTRSETGVMRPFKSGGFHLAIEAQAPILPITVSGSHRLTPKRSLRVESGHMKVVYGKPIETRGLPLEEREALKERVR 247
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11632.1441.1 vs. uniprot
Match: A0A6N8ZET9_9GAMM (1-acyl-sn-glycerol-3-phosphate acyltransferase n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N8ZET9_9GAMM)

HSP 1 Score: 106 bits (264), Expect = 3.620e-24
Identity = 67/183 (36.61%), Postives = 100/183 (54.64%), Query Frame = 1 
Query:  136 AWLLLLMGIHVRADGLTERSLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINRQHRASAVQALAEAAERARELEMFVAMAPEGTRTKTGQLGPFKKGALHMQEQLQCPVIPVTIRGGYELFPLKWNFNQCGKVVVKYHKPIEAAEI--KSRDGLSRRLRQ 678
            A LL   G+ V + GL      R  +++  H S  D + +  T P +L  V KEEL +VPV G  +   G I I+R++R SA+++L  AA R RE  + V M  EGTR+ TG+L PFKKGA  +  + + PV+PV + G   + P      + G++ V+  +PIE  ++    R+ L  R RQ
Sbjct:   45 AVLLRAAGVTVTSTGLDRVDPRRSQIVVSNHQSWFDVLALFATFPTSLRFVAKEELRSVPVFGKAILRCGHIAIDRRNRHSAIESLQRAARRLRERTLHVVMFAEGTRSPTGELQPFKKGAFVLALETRTPVLPVAVVGSRAVMPKHSYAIRSGEIEVRVGEPIEVGDLTMSDRNALRDRARQ 227
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11632.1441.1 vs. uniprot
Match: A0A4D9D1W3_9STRA (PlsC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1W3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.580e-24
Identity = 63/183 (34.43%), Postives = 105/183 (57.38%), Query Frame = 1 
Query:  145 LLLMGIHVRADGLTERSLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINRQHRASAVQALAEAAERARELEMFVAMAPEGTRTKTGQLGPFKKGALHMQEQLQCPVIPVTIRGGYELFPLKWNFNQCGKVVVKYHKPIEAAEI-----KSRDGLSRRLRQ 678
            L L G+    +G  +     P ++LF H S LD  + L + P+   ++ K+++  +P +GW+      +PI+R+HR  A++ L  A  RA      VA++PEGTR+KTGQL  FKKG  ++Q + +  + PV I+G +EL+P K+ F   G+V + Y  PI+   +     K+++ LSR +R+
Sbjct:  202 LYLAGVFYTEEGKAKGGYRTPLVVLFQHGSNLDGFLFLDSFPQFFKSIGKDDIYLMPYVGWLAYVIATLPIDRRHRNEAIKQLGRAT-RACASGTAVALSPEGTRSKTGQLMRFKKGPFYVQAESRASIAPVVIQGTFELWPPKYFFTCPGQVCMNYLPPIDPDSLPAKVGKNKEELSRFVRR 383
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11632.1441.1 vs. uniprot
Match: A0A2A5BAJ8_9FLAO (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2A5BAJ8_9FLAO)

HSP 1 Score: 103 bits (256), Expect = 2.410e-23
Identity = 61/164 (37.20%), Postives = 94/164 (57.32%), Query Frame = 1 
Query:  142 LLLLMGIHVRADGLTERSLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINRQHRASAVQALAEAAERARELEMFVAMAPEGTRTKTGQLGPFKKGALHMQEQLQCPVIPVTIRGGYELFPLKWNFNQCGKVVVKYHKPIEA 633
            L+ + G+ ++  G+      +P + +  H S +D  V+    P  L  + K+EL+ VP++GW M   G I I+R +R  AV++L +AA + +  +  VAM PEGTR+K G+LG FKKGA H+       +IPV I+G Y L+P   N    G V V+  KPI++
Sbjct:   46 LIWIAGVKLKTYGVENVPTDQPLIFIANHCSYIDIGVLCRIAPVNLHFIGKKELMWVPIIGWYMVVAGHIFIDRSNRKKAVESLKKAALKIKNGKC-VAMYPEGTRSKAGELGEFKKGAFHLALDAGVCIIPVHIKGTYSLWPATSNTITPGDVTVRIGKPIDS 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11632.1441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSD1_ECTSI1.420e-12788.051-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A6H5L1M9_9PHAE7.980e-8170.10PlsC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YU14_9STRA1.090e-3636.99PlsC domain-containing protein n=2 Tax=Tribonema m... [more]
A0A2A4Z296_9FLAO3.550e-2738.551-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A3P3Y9V1_PLABS3.940e-2737.781-acyl-sn-glycerol-3-phosphate acyltransferase n=2... [more]
A0A5C6RRA9_9FLAO1.460e-2538.181-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A7C2SD30_9DELT5.470e-2535.911-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A6N8ZET9_9GAMM3.620e-2436.611-acyl-sn-glycerol-3-phosphate acyltransferase n=3... [more]
A0A4D9D1W3_9STRA5.580e-2434.43PlsC domain-containing protein n=2 Tax=Monodopsida... [more]
A0A2A5BAJ8_9FLAO2.410e-2337.201-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11632contigH-canaliculatus_F_contig11632:155..3815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score358.6
Seed ortholog evalue2e-96
Seed eggNOG ortholog2880.D8LSD1
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K00655,ko:K13509
KEGG ReactionR02241,R09381
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04072,ko04975,map00561,map00564,map01100,map01110,map04072,map04975
KEGG ModuleM00089
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0204@1,KOG2848@2759
EC2.3.1.51
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Ec32 ortholog description1-acyl-sn-glycerol-3-phosphate acyltransferase
Ec32 orthologEc-21_003240.1
Exons6
Model size678
Cds size651
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928855.593476-UTR-H-canaliculatus_F_contig11632:154..1811622928855.593476-UTR-H-canaliculatus_F_contig11632:154..181Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11632 155..181 +
1696845590.27866-UTR-H-canaliculatus_F_contig11632:154..1811696845590.27866-UTR-H-canaliculatus_F_contig11632:154..181Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11632 155..181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928855.6055846-CDS-H-canaliculatus_F_contig11632:181..2441622928855.6055846-CDS-H-canaliculatus_F_contig11632:181..244Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11632 182..244 +
1696845590.2929435-CDS-H-canaliculatus_F_contig11632:181..2441696845590.2929435-CDS-H-canaliculatus_F_contig11632:181..244Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11632 182..244 +
1622928855.6179922-CDS-H-canaliculatus_F_contig11632:490..6941622928855.6179922-CDS-H-canaliculatus_F_contig11632:490..694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11632 491..694 +
1696845590.303037-CDS-H-canaliculatus_F_contig11632:490..6941696845590.303037-CDS-H-canaliculatus_F_contig11632:490..694Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11632 491..694 +
1622928855.6281815-CDS-H-canaliculatus_F_contig11632:1226..13191622928855.6281815-CDS-H-canaliculatus_F_contig11632:1226..1319Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11632 1227..1319 +
1696845590.3126328-CDS-H-canaliculatus_F_contig11632:1226..13191696845590.3126328-CDS-H-canaliculatus_F_contig11632:1226..1319Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11632 1227..1319 +
1622928855.6381238-CDS-H-canaliculatus_F_contig11632:2106..22111622928855.6381238-CDS-H-canaliculatus_F_contig11632:2106..2211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11632 2107..2211 +
1696845590.3235667-CDS-H-canaliculatus_F_contig11632:2106..22111696845590.3235667-CDS-H-canaliculatus_F_contig11632:2106..2211Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11632 2107..2211 +
1622928855.6741135-CDS-H-canaliculatus_F_contig11632:2650..27581622928855.6741135-CDS-H-canaliculatus_F_contig11632:2650..2758Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11632 2651..2758 +
1696845590.3364294-CDS-H-canaliculatus_F_contig11632:2650..27581696845590.3364294-CDS-H-canaliculatus_F_contig11632:2650..2758Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11632 2651..2758 +
1622928855.6897304-CDS-H-canaliculatus_F_contig11632:3737..38151622928855.6897304-CDS-H-canaliculatus_F_contig11632:3737..3815Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11632 3738..3815 +
1696845590.3448315-CDS-H-canaliculatus_F_contig11632:3737..38151696845590.3448315-CDS-H-canaliculatus_F_contig11632:3737..3815Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11632 3738..3815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11632.1441.1prot_H-canaliculatus_F_contig11632.1441.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11632 182..3815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11632.1441.1

>prot_H-canaliculatus_F_contig11632.1441.1 ID=prot_H-canaliculatus_F_contig11632.1441.1|Name=mRNA_H-canaliculatus_F_contig11632.1441.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=217bp
MLTMLEQQLFLARNQRRMSRPGNSGGLSSILIRLDCAWLLLLMGIHVRAD
GLTERSLSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGW
IMASRGAIPINRQHRASAVQALAEAAERARELEMFVAMAPEGTRTKTGQL
GPFKKGALHMQEQLQCPVIPVTIRGGYELFPLKWNFNQCGKVVVKYHKPI
EAAEIKSRDGLSRRLRQ
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mRNA from alignment at H-canaliculatus_F_contig11632:155..3815+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11632.1441.1 ID=mRNA_H-canaliculatus_F_contig11632.1441.1|Name=mRNA_H-canaliculatus_F_contig11632.1441.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3661bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11632:155..3815+ (Hapterophycus canaliculatus Oshoro5f female)
GGCTTTGTGGTGTCGATACCTCTCATCATGCTCACGATGCTCGAGCAGCA
GCTGTTCCTGGCGCGCAACCAGAGGCGAATGTCCCGCCCTGTCGGCGCCA
CCACCAGCGGTGGCGGCGGCGATAGCAGCATCACCCGATGCAACAGCGCC
GGAACCGGCGCCGGCAGCACGGCCTCGAGTCCCCCCCAGCTAGAACCCTC
CGTACCCTTGGGCGGCAAGGCGGCAGCGGCAGCGGCAGCGGCAGCAGCGG
CAGCAGCAGCACGGCCTACCGCCCCCTTCTCGGACGAACGGACCGCCGGG
GAGGATGACGGCGGCGGCGGCGGCGTGGGTCCGCAGGGCAACAGCGGGGG
CCTGTCGTCGATCCTCATTCGGCTGGACTGCGCGTGGCTGCTGCTGCTCA
TGGGCATACACGTGCGCGCCGACGGGCTGACCGAGCGGTCGCTCTCCCGG
CCGGCGATGCTCCTCTTCACGCACGTCAGCACCCTGGACGCGGTGGTGAT
CCTTGGAACGCTGCCGAGGGCCCTGTGTGCGGTGGTGAAGGTGAGGATGG
GTGGGGCCGAGCGGAACGGGCGCGAGCGCGAGCGCGAGCGCGTCCGTCAT
TGCCTGGTGCCGCACAGCCTTTTTCTTTAAAGCGGCGGGCAGGAGCTGGG
AGGGCGGAGGGGACGGACGGGGCCTGGGGGCCCGGGAGAGGGCACGGTCG
GTTTGTTTTTCAGGATGTCTTCAGAGTCAGGGCCGAGGTTTTGAGAGGAA
CAGCTGTTTCTTCGTTGCTTTCGATATGTTGCCCTGCGGGTTGGACCGCG
CACCGAGCGGGCGCGGGCGGGCCTTGTTGCCTTCTTTTCCTGCCGCCCAC
GTTGCAGCATCTTCCGTGCCCACGCTTTGGCTCGTGTTTCCTGCCGGCGC
TGTTGATGCTGGTGCTGCTGGTGCTTCTGCAGCGGTTGGGGTGAGGGTCG
CTGCAGCCGGCTATGTTGTGGCTTGAGCTTCTTTTTTCGGTGTCTCTCTC
TTTCTCTCTCCACGTCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCAAACAGGAGGAATTGCTCGCCGTCCCTGTCCTCG
GATGGATAATGGCCTCCCGCGGCGCCATCCCAATCAACCGACAACACCGT
GCTTCCGCAGTCCAGGTACTGCCGTGTAGTCGAGAGCCCGCGCGCGCCAT
CGCTCGGAGGCGCCGTTTTCTTGCCAGTCTCGACCGAGCCACCGGACCGG
TCGGTGCAAAAAGATGCTCAGCCTTGAGCGGGAATCAAACAAATCGAGAC
CCATTTCTTAACTCCGGGGTCCGTCCGACGATGAAGGCAGTCGGTCGGTC
GAAAAGGAATGGCGCAAAACGAGATGCAGCATCTGAGGAGTGCGCCGAGG
GTTGACTCGAGGGTTGCAGCTGTTGTGAGCGAGCAGAAAGAATCGTGCCG
TTCCTGCCCTGACGGAGACAAGATGCCACCCCCGGTTTTAGAACTAGAGC
AATCCTTGCGGGATCGCACGGGCTCGGGCTCGGGCGGGCGGGCGAGGAAG
GGTGATGGCGGAAGACGCAGCCGTTCAGCGCTTCCTCGTGTCTGCGTCGG
TGTCTATCCGTGCTTTGGGGAGCGGTTCGCGGTTCCCGTCTCGACCGAGC
GTTAAAAGCGCTTCAGTCGCAAGCTTTTTCGGAACCAACAGAAAGGCCCT
CGATCGCGGAGCCCCCGCGAGACCGCGGGCGGTTTAGAAGCTCGTTTAGA
AGCTCGCATGTATGGACTTTAGCTGCGCGCGTGGATGCCTACGGCTGCTC
GCGTCTTTGGTGGGTGTTTTTTTCGCCGGTCGGTTCCCATTCACACACAC
ACACACACACACACACACACACACACACACACACACACACACGCAAACCG
CTGGTGCTGTTGGTGCGGCGCTGCGCTGCGCTGCGCCTGGCTTCGTCGGC
AGGCGCTGGCGGAGGCCGCCGAGCGAGCGAGAGAGCTGGAGATGTTTGTC
GCGATGGCCCCCGAAGGAACCAGGACCAAGACGGGCCAGCTCGGACCTTT
CAAAAAGGTGAGCGGGATCGAGATCGAGACACGACACGCCGCTCCGCTCT
CTTAAGCGCGGGGGGCAAATCGGACACGGCCTCGTCGCCGCAGAATGCGC
GCTTCTCGGTTCTTCGAACAAGAGAGCTCTTGGCGGCTCGGAGGCGAGGT
CACCGTGACGGGAGATTTTCCTTGTTTTTTTTTTTTAGGGAAGAGAGAGG
GAGAGTTTGAGGTGGCGATCAGCTCGCACGAGCAAGACGCGCAGAAAAGA
AGAACGAGATTCTTTTCACCCGTGGTCGCCTGACCGACCAACCGCGACGT
CAGGCGCAGGAGAGCAGGCCGAGGATTGCCTTTCCGTTTTTTGCATCTAC
GCGCCATGGCGACACAAACGAGACGAGGATGCGGCCGGTCTTTTCCTCGT
CCCCTTGCCTGTTGCACGCTCGGTCCATCGCTGCCGTCCTTTCCAGGGAG
CGCTGCACATGCAGGAGCAGCTGCAGTGTCCGGTGATACCCGTCACCATC
CGCGGTGGGTACGAGCTGTTCCCGTTGAAGTGGAACTTCAACCAGTGCGG
CAAGGTACGACGGTGACGCCTCAAGCTACTCTTCCGCCCGCCCTTCCCCC
CCCCCCACGGCCTTCCTACTCCGTCCGCGTTGTGTTTTGGAAAATCACGT
TTCCCAAGGGTGTGCCGCGGCGCGTGGTAAAAAGAAATGTCAGCCCGGCT
CTTGTTGGTCAGATGCCAGCCCTCGAAACAGCGCGTGCGCGCGTATTTCT
TCGCAAGCGGCCGTCCCATCCATTTCCTTTTTTTTCTTTTTTTCCCATTG
TCGTAACACCGGTACGGCAATGGCAACGATCTCTTTTTCTTTCGCACGTG
CGTCAACGCCCGACCCCCTTAGCCCGCGAGCCCGGCGCGCCCTGGGGGGG
CGGGGGGGGGTCCTCCAAAGGGGGGGGGGGGCCCTCCTCTCTCTCGTGCT
CGCTTCCGTCCGTCCGTCGGTCGGTCTGCGTGAGTCTGTTTACATATCCT
CCGCACCCCTTACGCTGGTTCTTCTGGTTATTTCAAGCCGCGAAGCTCCT
GCGAGACTCACCCGAATGATGGCGTGCCGCACGTATGTGCAGTATCGTGA
GAACCGGGGTCTCGGCACAGAGGTTGCGAAGGTGGTTTTTCTCCCGCCCG
AAACGTCGACGAGGGGGAGGGTTCCAAGGTGTGGAGAGGCCGGGTGCCGT
CGGGAAGATCTTGGCCGTCCGCGGGCTTTTCCGAAGACGGGTTTTTCGAT
GTCCGCACCTTCTCTCCCCGTTACCGAGGCAACGGGGCGGGAAAATCCGC
GTCACCCCGTCCGCTGTAAGACCTCGATTCGTAGACGGTGCAAGTATCGA
TATCCCGGGTTGGCGCACGTCGGTCGTTGCAGAATTTTTGGGTCGTTTCT
CTTGCACAGTCTTAGCGAAGATGGCGTGGGTTGACCCAGCTTGCGGGATG
AACCGCCAAGCGTGGTTGATTCTTTCGGAGATTTATTTTTCATGCTTGTG
AATCCGCGTTTGCTGTGGCCGGCCATCCGGCAGGTCGTGGTGAAGTATCA
CAAGCCGATCGAGGCGGCGGAGATCAAGTCTCGGGACGGGCTGTCGCGGA
GGCTGCGTCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11632:155..3815+

>mRNA_H-canaliculatus_F_contig11632.1441.1 ID=mRNA_H-canaliculatus_F_contig11632.1441.1|Name=mRNA_H-canaliculatus_F_contig11632.1441.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1302bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11632:155..3815+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCACGATGCTCGAGCAGCAGCTGTTCCTGGCGCGCAACCAGAGGCG
AATGTCCCGCCCTATGCTCACGATGCTCGAGCAGCAGCTGTTCCTGGCGC
GCAACCAGAGGCGAATGTCCCGCCCTGGCAACAGCGGGGGCCTGTCGTCG
ATCCTCATTCGGCTGGACTGCGCGTGGCTGCTGCTGCTCATGGGCATACA
CGTGCGCGCCGACGGGCTGACCGAGCGGTCGCTCTCCCGGCCGGCGATGC
TCCTCTTCACGCACGTCAGCACCCTGGACGCGGTGGTGATCCTTGGAACG
CTGCCGAGGGCCCTGTGTGCGGTGGTGAAGGGCAACAGCGGGGGCCTGTC
GTCGATCCTCATTCGGCTGGACTGCGCGTGGCTGCTGCTGCTCATGGGCA
TACACGTGCGCGCCGACGGGCTGACCGAGCGGTCGCTCTCCCGGCCGGCG
ATGCTCCTCTTCACGCACGTCAGCACCCTGGACGCGGTGGTGATCCTTGG
AACGCTGCCGAGGGCCCTGTGTGCGGTGGTGAAGGAGGAATTGCTCGCCG
TCCCTGTCCTCGGATGGATAATGGCCTCCCGCGGCGCCATCCCAATCAAC
CGACAACACCGTGCTTCCGCAGTCCAGGAGGAATTGCTCGCCGTCCCTGT
CCTCGGATGGATAATGGCCTCCCGCGGCGCCATCCCAATCAACCGACAAC
ACCGTGCTTCCGCAGTCCAGGCGCTGGCGGAGGCCGCCGAGCGAGCGAGA
GAGCTGGAGATGTTTGTCGCGATGGCCCCCGAAGGAACCAGGACCAAGAC
GGGCCAGCTCGGACCTTTCAAAAAGGCGCTGGCGGAGGCCGCCGAGCGAG
CGAGAGAGCTGGAGATGTTTGTCGCGATGGCCCCCGAAGGAACCAGGACC
AAGACGGGCCAGCTCGGACCTTTCAAAAAGGGAGCGCTGCACATGCAGGA
GCAGCTGCAGTGTCCGGTGATACCCGTCACCATCCGCGGTGGGTACGAGC
TGTTCCCGTTGAAGTGGAACTTCAACCAGTGCGGCAAGGGAGCGCTGCAC
ATGCAGGAGCAGCTGCAGTGTCCGGTGATACCCGTCACCATCCGCGGTGG
GTACGAGCTGTTCCCGTTGAAGTGGAACTTCAACCAGTGCGGCAAGGTCG
TGGTGAAGTATCACAAGCCGATCGAGGCGGCGGAGATCAAGTCTCGGGAC
GGGCTGTCGCGGAGGCTGCGTCAGGTCGTGGTGAAGTATCACAAGCCGAT
CGAGGCGGCGGAGATCAAGTCTCGGGACGGGCTGTCGCGGAGGCTGCGTC
AG
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