mRNA_H-canaliculatus_F_contig11624.1435.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11624.1435.1
Unique NamemRNA_H-canaliculatus_F_contig11624.1435.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11624.1435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11624contigH-canaliculatus_F_contig11624:1470..2116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size175
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928855.0009303-CDS-H-canaliculatus_F_contig11624:1469..15561622928855.0009303-CDS-H-canaliculatus_F_contig11624:1469..1556Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11624 1470..1556 +
1696845590.0892932-CDS-H-canaliculatus_F_contig11624:1469..15561696845590.0892932-CDS-H-canaliculatus_F_contig11624:1469..1556Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11624 1470..1556 +
1622928855.0162983-CDS-H-canaliculatus_F_contig11624:2029..21161622928855.0162983-CDS-H-canaliculatus_F_contig11624:2029..2116Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11624 2030..2116 +
1696845590.0979285-CDS-H-canaliculatus_F_contig11624:2029..21161696845590.0979285-CDS-H-canaliculatus_F_contig11624:2029..2116Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11624 2030..2116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11624.1435.1prot_H-canaliculatus_F_contig11624.1435.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11624 1470..2116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11624.1435.1

>prot_H-canaliculatus_F_contig11624.1435.1 ID=prot_H-canaliculatus_F_contig11624.1435.1|Name=mRNA_H-canaliculatus_F_contig11624.1435.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
KHRGGEGGGCLPLPRPVQTPVSHSARTTWIAWKIVSIPGFVHATGSGSTL
WTHVELGS
back to top

mRNA from alignment at H-canaliculatus_F_contig11624:1470..2116+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11624.1435.1 ID=mRNA_H-canaliculatus_F_contig11624.1435.1|Name=mRNA_H-canaliculatus_F_contig11624.1435.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=647bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11624:1470..2116+ (Hapterophycus canaliculatus Oshoro5f female)
AAGCACAGGGGTGGCGAGGGTGGGGGCTGTTTGCCCTTACCTCGCCCCGT
CCAAACACCAGTCAGCCACAGTGCCCGAACCACGTGGGTAGGTGGTAAAG
ATTGCGCAAGGGATAATACACACGCCCCGCCTACGGATGCCGAAGAACCT
TTGTTGCGACTTGCTTCCGTTGTTCGTGCCATCTGCCTGGGAACCTAGTA
GAGTTTTTGGTTTCACGAACATGGCCTCGTCGACATAGCGACGAACATCG
CCTGATTCCTTCTGAAGTGTAATAATACGTGTTTTTTTTGTGGTTGAGGT
ATCTTGTGAGCAGAACAAGCTGTCTGGTTTATGCACTCTCTTGTTGCTCC
CAAGTTCGTTTGAGCATCCTGTCTGTGTTCACGGTAGTCCTCCCTCGCCA
TCTGCCTCTATATCCGCGACAACAACCCCCCTCGCACCACGCGTGAGTTG
TGACATTTTTCGCAGACAAGCGTTGTCTCTGGGAGAATCATCAGATTTCT
TGAGCGGCATTGAGAAAATACTGCCACCCCGAAGAAACGACCTTACTTCG
ATGCCGGCAGATCGCATGGAAGATTGTCAGCATTCCAGGATTCGTTCACG
CCACGGGAAGCGGATCTACGCTATGGACGCACGTTGAACTTGGATCA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11624:1470..2116+

>mRNA_H-canaliculatus_F_contig11624.1435.1 ID=mRNA_H-canaliculatus_F_contig11624.1435.1|Name=mRNA_H-canaliculatus_F_contig11624.1435.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11624:1470..2116+ (Hapterophycus canaliculatus Oshoro5f female)
AAGCACAGGGGTGGCGAGGGTGGGGGCTGTTTGCCCTTACCTCGCCCCGT
CCAAACACCAGTCAGCCACAGTGCCCGAACCACGTGGAAGCACAGGGGTG
GCGAGGGTGGGGGCTGTTTGCCCTTACCTCGCCCCGTCCAAACACCAGTC
AGCCACAGTGCCCGAACCACGTGGATCGCATGGAAGATTGTCAGCATTCC
AGGATTCGTTCACGCCACGGGAAGCGGATCTACGCTATGGACGCACGTTG
AACTTGGATCAATCGCATGGAAGATTGTCAGCATTCCAGGATTCGTTCAC
GCCACGGGAAGCGGATCTACGCTATGGACGCACGTTGAACTTGGATCA
back to top