mRNA_H-canaliculatus_F_contig11615.1427.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11615.1427.1
Unique NamemRNA_H-canaliculatus_F_contig11615.1427.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11615.1427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11615contigH-canaliculatus_F_contig11615:3012..3804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size311
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11615.1427.1prot_H-canaliculatus_F_contig11615.1427.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11615 3012..3802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928853.5400748-CDS-H-canaliculatus_F_contig11615:3011..30451622928853.5400748-CDS-H-canaliculatus_F_contig11615:3011..3045Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11615 3012..3045 +
1696845589.4197128-CDS-H-canaliculatus_F_contig11615:3011..30451696845589.4197128-CDS-H-canaliculatus_F_contig11615:3011..3045Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11615 3012..3045 +
1622928853.5552568-CDS-H-canaliculatus_F_contig11615:3429..36571622928853.5552568-CDS-H-canaliculatus_F_contig11615:3429..3657Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11615 3430..3657 +
1696845589.4333818-CDS-H-canaliculatus_F_contig11615:3429..36571696845589.4333818-CDS-H-canaliculatus_F_contig11615:3429..3657Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11615 3430..3657 +
1622928853.5696661-CDS-H-canaliculatus_F_contig11615:3755..38021622928853.5696661-CDS-H-canaliculatus_F_contig11615:3755..3802Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11615 3756..3802 +
1696845589.4427743-CDS-H-canaliculatus_F_contig11615:3755..38021696845589.4427743-CDS-H-canaliculatus_F_contig11615:3755..3802Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11615 3756..3802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11615.1427.1

>prot_H-canaliculatus_F_contig11615.1427.1 ID=prot_H-canaliculatus_F_contig11615.1427.1|Name=mRNA_H-canaliculatus_F_contig11615.1427.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
VRPGGGLPPRRERHKPLTIERVEDTAPACRAPFYERAKSTSRARADGADR
LGDEDHACARGLRARITQDLTAFGFRIGVAAVRLRAGGTSSAVRRAAGTS
GYR
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mRNA from alignment at H-canaliculatus_F_contig11615:3012..3804+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11615.1427.1 ID=mRNA_H-canaliculatus_F_contig11615.1427.1|Name=mRNA_H-canaliculatus_F_contig11615.1427.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=793bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11615:3012..3804+ (Hapterophycus canaliculatus Oshoro5f female)
GTTCGACCTGGCGGGGGCTTACCGCCACGTCGTGGTGCGTCCTGCCGCAC
AAAACGTCCCGCCCACCGCCTCACCACCTCCGGCCTCTTGACGTACGCGG
GCAGCGCGGGCCTACGCTGCGAAGTCAGCCGACTGTACACACCGCCTACG
TAAGACTGTCTCCTCTGACAGCGTCTGCTGTCCTTTTCGTCTCCGACGCA
GGTACCGCGCTGGCACGAACTCGGCCGTTTTCGCCCCTTGCCTCGGCAGT
CCGTCGTGCCTCCTCTCTGTCCACGTTCTTCCGTTCGCCGCCCGGGCCGC
GCGCGGCGCGTACGAGCACGTCCACACCTCTCCTCGGCGCCTGTTCACGT
CCGCTCGTCATTTTTTGCCCACGAACAACTTTCCCTCGCCGTGTGCGCGC
GTCTGTCCGTGCGGGTAGAGCGACACAAACCTCTGACTATCGAGCGGGTC
GAAGACACGGCCCCAGCGTGTCGAGCGCCGTTCTACGAGCGCGCAAAATC
GACCTCGCGAGCGCGCGCAGATGGCGCTGATCGGCTCGGCGATGAAGACC
ATGCGTGTGCACGGGGTCTCCGCGCACGGATAACGCAGGACCTAACAGCT
TTCGGCTTTCGAATCGGCGTGGCCGCCGTGCGCCTGCGCGCGGGAGGTTC
GTTTTTTTTTTGTGTTCCGTCTGCTGATCGGAAGCAACGAGACTACTACC
AACAACAACAACAATAACAACAACAACGTCGACAATCACGCCAGGTACAT
CCTCGGCAGTTCGGCGCGCGGCCGGTACCTCCGGGTACCGAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11615:3012..3804+

>mRNA_H-canaliculatus_F_contig11615.1427.1 ID=mRNA_H-canaliculatus_F_contig11615.1427.1|Name=mRNA_H-canaliculatus_F_contig11615.1427.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11615:3012..3804+ (Hapterophycus canaliculatus Oshoro5f female)
GTTCGACCTGGCGGGGGCTTACCGCCACGTCGTGGTTCGACCTGGCGGGG
GCTTACCGCCACGTCGTGAGCGACACAAACCTCTGACTATCGAGCGGGTC
GAAGACACGGCCCCAGCGTGTCGAGCGCCGTTCTACGAGCGCGCAAAATC
GACCTCGCGAGCGCGCGCAGATGGCGCTGATCGGCTCGGCGATGAAGACC
ATGCGTGTGCACGGGGTCTCCGCGCACGGATAACGCAGGACCTAACAGCT
TTCGGCTTTCGAATCGGCGTGGCCGCCGTGCGCCTGCGCGCGGGAGAGCG
ACACAAACCTCTGACTATCGAGCGGGTCGAAGACACGGCCCCAGCGTGTC
GAGCGCCGTTCTACGAGCGCGCAAAATCGACCTCGCGAGCGCGCGCAGAT
GGCGCTGATCGGCTCGGCGATGAAGACCATGCGTGTGCACGGGGTCTCCG
CGCACGGATAACGCAGGACCTAACAGCTTTCGGCTTTCGAATCGGCGTGG
CCGCCGTGCGCCTGCGCGCGGGAGGTACATCCTCGGCAGTTCGGCGCGCG
GCCGGTACCTCCGGGTACCGAGTACATCCTCGGCAGTTCGGCGCGCGGCC
GGTACCTCCGGGTACCGA
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