mRNA_H-canaliculatus_F_contig11615.1425.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11615.1425.1
Unique NamemRNA_H-canaliculatus_F_contig11615.1425.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11615.1425.1 vs. uniprot
Match: A0A6H5JSV0_9PHAE (TRUD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV0_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 8.690e-25
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 1
Query:   19 GFVNFFGEQRFGRDGTNNLDVGMLLLGGDWAGAIDRIMAPHPADSTQVAEAKEAF 183
            GFVNFFGEQRFGRDGTNNLDVG+ LL GDW GAIDRIMAPHPADS  VAEAKEAF
Sbjct:   18 GFVNFFGEQRFGRDGTNNLDVGLRLLEGDWVGAIDRIMAPHPADSAMVAEAKEAF 72          
BLAST of mRNA_H-canaliculatus_F_contig11615.1425.1 vs. uniprot
Match: D7FYR3_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR3_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.980e-24
Identity = 48/56 (85.71%), Postives = 51/56 (91.07%), Query Frame = 1
Query:   16 QGFVNFFGEQRFGRDGTNNLDVGMLLLGGDWAGAIDRIMAPHPADSTQVAEAKEAF 183
            +GFVNFFGEQRFGRDGTNNLDVG+LLL GDW  AIDRIMAPHPADS  V+EAKEAF
Sbjct:  396 EGFVNFFGEQRFGRDGTNNLDVGLLLLEGDWPAAIDRIMAPHPADSAMVSEAKEAF 451          
BLAST of mRNA_H-canaliculatus_F_contig11615.1425.1 vs. uniprot
Match: A0A836CLL9_9STRA (TRUD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.550e-10
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    7 IEPQGFVNFFGEQRFGRDGTNNLDVGMLLLGGDWAGAIDRIMAPHPADSTQVAEAKEAF 183
            +  QGFVNFFG QRFGR  T N +VGM +L  +WA A+D+++AP   D   VA AK A+
Sbjct:  362 LVAQGFVNFFGPQRFGRADTPNHEVGMSILRLEWAEAVDKLLAPSSRDGADVAAAKAAW 420          
BLAST of mRNA_H-canaliculatus_F_contig11615.1425.1 vs. uniprot
Match: A0A5J4WAN7_9EUKA (Putative multisubstrate pseudouridine synthase 7 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4WAN7_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 1.350e-6
Identity = 24/59 (40.68%), Postives = 34/59 (57.63%), Query Frame = 1
Query:    7 IEPQGFVNFFGEQRFGRDGTNNLDVGMLLLGGDWAGAIDRIMAPHPADSTQVAEAKEAF 183
            +   GF+N+FGEQRFG       +VG  ++  +W  A+  IM+ H  DS Q+ EAK  F
Sbjct:  381 VARNGFINYFGEQRFGTGEIGTHEVGKCIIKKEWERAVKLIMSEHNGDSPQLIEAKRIF 439          
BLAST of mRNA_H-canaliculatus_F_contig11615.1425.1 vs. uniprot
Match: B7FX01_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FX01_PHATC)

HSP 1 Score: 52.4 bits (124), Expect = 2.510e-6
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    7 IEPQGFVNFFGEQRFGRDGTNNLDVGMLLLGGDWAGAIDRIMAPHPADSTQVAEAK 174
            ++  GF+N+FG QRFG+    +L  G+ +L GD+ GAID IM+P P +   +AEA+
Sbjct:  351 LKDNGFINYFGVQRFGKYHDTHL-TGIAILKGDYEGAIDIIMSPKPDERPNIAEAR 405          
BLAST of mRNA_H-canaliculatus_F_contig11615.1425.1 vs. uniprot
Match: A0A0L0DP21_THETB (Pus7 protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DP21_THETB)

HSP 1 Score: 52.0 bits (123), Expect = 3.440e-6
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1
Query:    4 TIEPQGFVNFFGEQRFGRDGTNNLDVGMLLLGGDWAGAIDRIMAPHPA-DSTQVAEAKEAF 183
            +   +GF+N+FGEQRFG       +VG  +LGGD AGAI  I+ P  + D+ Q+  AK  F
Sbjct:  354 SFSTRGFINYFGEQRFGTHEVRTHEVGRKILGGDLAGAIRLILKPSLSKDTPQILAAKAQF 414          
BLAST of mRNA_H-canaliculatus_F_contig11615.1425.1 vs. uniprot
Match: A0A4Y7TNY0_9AGAR (Pseudouridine synthase n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7TNY0_9AGAR)

HSP 1 Score: 52.0 bits (123), Expect = 3.450e-6
Identity = 24/61 (39.34%), Postives = 36/61 (59.02%), Query Frame = 1
Query:    1 NTIEPQGFVNFFGEQRFGRDGTNNLDVGMLLLGGDWAGAIDRIMAPHPADSTQVAEAKEAF 183
            NTI+  GF+N++G QRFG        +G+ LL  DW  AID I+     +  +VA A++A+
Sbjct:  475 NTIKTNGFINYYGMQRFGTASVPTHAIGLALLRSDWQKAIDLILQKRHGEHPEVAAARDAW 535          
BLAST of mRNA_H-canaliculatus_F_contig11615.1425.1 vs. uniprot
Match: A0A087H6Z2_ARAAL (TRUD domain-containing protein n=10 Tax=Brassicaceae TaxID=3700 RepID=A0A087H6Z2_ARAAL)

HSP 1 Score: 51.2 bits (121), Expect = 6.430e-6
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 1
Query:    4 TIEPQGFVNFFGEQRFGRDGTNNLDVGMLLLGGDWAGAIDRIMAPHPADSTQVAEAKEAF 183
            ++   GF+N+FG QRFG        VG  LL G+W  AID I+ P  ++   V EA+E +
Sbjct:  311 SLGKDGFINYFGLQRFGSGSVPTHHVGAALLKGEWKDAIDMILNPRESERNDVNEAREYY 370          
BLAST of mRNA_H-canaliculatus_F_contig11615.1425.1 vs. uniprot
Match: A0A5E3WJB2_9AGAM (TRUD domain-containing protein n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3WJB2_9AGAM)

HSP 1 Score: 50.4 bits (119), Expect = 1.210e-5
Identity = 21/61 (34.43%), Postives = 35/61 (57.38%), Query Frame = 1
Query:    1 NTIEPQGFVNFFGEQRFGRDGTNNLDVGMLLLGGDWAGAIDRIMAPHPADSTQVAEAKEAF 183
            N+I+  GF+N++G QRFG        +G+  L  DW GA++ I+   P +   V  A++A+
Sbjct:  535 NSIKTNGFINYYGMQRFGTAAIPTHTIGLAFLRSDWQGAVNLILRERPGEHPDVVAARKAW 595          
BLAST of mRNA_H-canaliculatus_F_contig11615.1425.1 vs. uniprot
Match: A0A0X3P2A4_SCHSO (Pseudouridylate synthase 7 homolog n=3 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3P2A4_SCHSO)

HSP 1 Score: 49.7 bits (117), Expect = 2.250e-5
Identity = 24/59 (40.68%), Postives = 32/59 (54.24%), Query Frame = 1
Query:   10 EPQGFVNFFGEQRFGRDG-TNNLDVGMLLLGGDWAGAIDRIMAPHPADSTQVAEAKEAF 183
            + QGF+N+FG QRFG         +G  L+  DW  AID I+ P P D   V + KE +
Sbjct:  287 QKQGFINYFGLQRFGHSAQAQTFAIGKYLIKSDWEKAIDLILKPTPLDLPAVRQVKEKY 345          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11615.1425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSV0_9PHAE8.690e-2589.09TRUD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FYR3_ECTSI2.980e-2485.71Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A836CLL9_9STRA1.550e-1052.54TRUD domain-containing protein n=1 Tax=Tribonema m... [more]
A0A5J4WAN7_9EUKA1.350e-640.68Putative multisubstrate pseudouridine synthase 7 n... [more]
B7FX01_PHATC2.510e-644.64Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A0L0DP21_THETB3.440e-644.26Pus7 protein n=1 Tax=Thecamonas trahens ATCC 50062... [more]
A0A4Y7TNY0_9AGAR3.450e-639.34Pseudouridine synthase n=1 Tax=Coprinellus micaceu... [more]
A0A087H6Z2_ARAAL6.430e-640.00TRUD domain-containing protein n=10 Tax=Brassicace... [more]
A0A5E3WJB2_9AGAM1.210e-534.43TRUD domain-containing protein n=1 Tax=Peniophora ... [more]
A0A0X3P2A4_SCHSO2.250e-540.68Pseudouridylate synthase 7 homolog n=3 Tax=Schisto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11615contigH-canaliculatus_F_contig11615:181..363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue7.4e-20
Seed eggNOG ortholog2880.D7FYR3
KEGG koko:K06176
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0585@1,KOG2339@2759
EC5.4.99.27
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928853.6265633-CDS-H-canaliculatus_F_contig11615:180..3631622928853.6265633-CDS-H-canaliculatus_F_contig11615:180..363Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11615 181..363 +
1696845589.4522038-CDS-H-canaliculatus_F_contig11615:180..3631696845589.4522038-CDS-H-canaliculatus_F_contig11615:180..363Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11615 181..363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11615.1425.1prot_H-canaliculatus_F_contig11615.1425.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11615 181..363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11615.1425.1

>prot_H-canaliculatus_F_contig11615.1425.1 ID=prot_H-canaliculatus_F_contig11615.1425.1|Name=mRNA_H-canaliculatus_F_contig11615.1425.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=61bp
NTIEPQGFVNFFGEQRFGRDGTNNLDVGMLLLGGDWAGAIDRIMAPHPAD
STQVAEAKEAF
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mRNA from alignment at H-canaliculatus_F_contig11615:181..363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11615.1425.1 ID=mRNA_H-canaliculatus_F_contig11615.1425.1|Name=mRNA_H-canaliculatus_F_contig11615.1425.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=183bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11615:181..363+ (Hapterophycus canaliculatus Oshoro5f female)
AACACGATCGAACCGCAGGGTTTTGTGAATTTCTTCGGAGAGCAGCGCTT CGGGCGGGACGGCACGAACAACCTCGACGTGGGTATGCTGCTCCTGGGGG GAGACTGGGCGGGGGCCATCGACAGGATTATGGCGCCGCACCCTGCGGAC TCGACACAGGTCGCCGAGGCGAAGGAGGCGTTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11615:181..363+

>mRNA_H-canaliculatus_F_contig11615.1425.1 ID=mRNA_H-canaliculatus_F_contig11615.1425.1|Name=mRNA_H-canaliculatus_F_contig11615.1425.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11615:181..363+ (Hapterophycus canaliculatus Oshoro5f female)
AACACGATCGAACCGCAGGGTTTTGTGAATTTCTTCGGAGAGCAGCGCTT
CGGGCGGGACGGCACGAACAACCTCGACGTGGGTATGCTGCTCCTGGGGG
GAGACTGGGCGGGGGCCATCGACAGGATTATGGCGCCGCACCCTGCGGAC
TCGACACAGGTCGCCGAGGCGAAGGAGGCGTTTAACACGATCGAACCGCA
GGGTTTTGTGAATTTCTTCGGAGAGCAGCGCTTCGGGCGGGACGGCACGA
ACAACCTCGACGTGGGTATGCTGCTCCTGGGGGGAGACTGGGCGGGGGCC
ATCGACAGGATTATGGCGCCGCACCCTGCGGACTCGACACAGGTCGCCGA
GGCGAAGGAGGCGTTT
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