mRNA_H-canaliculatus_F_contig11612.1424.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11612.1424.1
Unique NamemRNA_H-canaliculatus_F_contig11612.1424.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11612.1424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11612contigH-canaliculatus_F_contig11612:3319..4055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size739
Cds size735
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928853.4652042-CDS-H-canaliculatus_F_contig11612:3318..40531622928853.4652042-CDS-H-canaliculatus_F_contig11612:3318..4053Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11612 3319..4053 +
1696845589.4084864-CDS-H-canaliculatus_F_contig11612:3318..40531696845589.4084864-CDS-H-canaliculatus_F_contig11612:3318..4053Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11612 3319..4053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11612.1424.1prot_H-canaliculatus_F_contig11612.1424.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11612 3319..4053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11612.1424.1

>prot_H-canaliculatus_F_contig11612.1424.1 ID=prot_H-canaliculatus_F_contig11612.1424.1|Name=mRNA_H-canaliculatus_F_contig11612.1424.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=245bp
DRRSITRTSSSPSASLEARAPPPPAEEGGTVTSKEQHRIVERARNKGAPG
AHGADVGGRSWVQHGRSRGVRWCSRGRGYASLGGRVSEASGEMRETGALA
TATAGVCRMLAGGPRSRGHRRDPASARAHGISRCRRKRDAKVARGELPPS
TEKASARWSKTCRLRRALTTTALVRTTAFTSQRREKGPARDNPSCFCLVY
LSQPTAARGHTATTPARNTVARPSPRLPPPRHASGGGKQPTPPAA
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mRNA from alignment at H-canaliculatus_F_contig11612:3319..4055+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11612.1424.1 ID=mRNA_H-canaliculatus_F_contig11612.1424.1|Name=mRNA_H-canaliculatus_F_contig11612.1424.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=737bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11612:3319..4055+ (Hapterophycus canaliculatus Oshoro5f female)
GACAGAAGGTCTATCACAAGGACGTCCTCCTCCCCGTCGGCGTCTCTGGA
GGCGCGCGCGCCGCCACCGCCGGCAGAGGAGGGGGGCACCGTGACGTCGA
AGGAACAGCACCGCATCGTGGAGCGGGCGAGGAACAAGGGGGCACCCGGA
GCACACGGGGCAGACGTGGGCGGGCGGTCGTGGGTACAACATGGCCGTTC
ACGTGGCGTGCGGTGGTGTTCTCGCGGGCGGGGCTACGCGAGTCTGGGAG
GGCGAGTTTCGGAGGCGAGCGGAGAGATGAGAGAAACGGGCGCGTTGGCC
ACCGCGACAGCCGGTGTGTGTCGGATGCTAGCCGGCGGGCCGAGGTCTAG
AGGGCACCGCCGGGACCCAGCGTCCGCGAGGGCCCACGGGATCTCCCGTT
GTCGGCGAAAACGCGACGCGAAGGTCGCGAGGGGGGAGCTTCCACCGTCC
ACCGAGAAAGCCTCCGCGAGGTGGAGCAAGACCTGCCGCCTTCGCCGCGC
GCTAACGACAACCGCCCTTGTCAGAACAACCGCGTTTACGTCACAGCGGC
GAGAGAAGGGTCCGGCGAGAGACAACCCCTCGTGCTTCTGTCTTGTCTAC
CTGTCTCAACCGACGGCCGCGCGCGGGCACACGGCAACCACGCCCGCAAG
AAACACTGTTGCACGACCCAGCCCCCGCCTCCCCCCCCCCCGGCACGCGA
GTGGCGGCGGAAAACAACCTACACCCCCCGCCGCGAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11612:3319..4055+

>mRNA_H-canaliculatus_F_contig11612.1424.1 ID=mRNA_H-canaliculatus_F_contig11612.1424.1|Name=mRNA_H-canaliculatus_F_contig11612.1424.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1470bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11612:3319..4055+ (Hapterophycus canaliculatus Oshoro5f female)
GACAGAAGGTCTATCACAAGGACGTCCTCCTCCCCGTCGGCGTCTCTGGA
GGCGCGCGCGCCGCCACCGCCGGCAGAGGAGGGGGGCACCGTGACGTCGA
AGGAACAGCACCGCATCGTGGAGCGGGCGAGGAACAAGGGGGCACCCGGA
GCACACGGGGCAGACGTGGGCGGGCGGTCGTGGGTACAACATGGCCGTTC
ACGTGGCGTGCGGTGGTGTTCTCGCGGGCGGGGCTACGCGAGTCTGGGAG
GGCGAGTTTCGGAGGCGAGCGGAGAGATGAGAGAAACGGGCGCGTTGGCC
ACCGCGACAGCCGGTGTGTGTCGGATGCTAGCCGGCGGGCCGAGGTCTAG
AGGGCACCGCCGGGACCCAGCGTCCGCGAGGGCCCACGGGATCTCCCGTT
GTCGGCGAAAACGCGACGCGAAGGTCGCGAGGGGGGAGCTTCCACCGTCC
ACCGAGAAAGCCTCCGCGAGGTGGAGCAAGACCTGCCGCCTTCGCCGCGC
GCTAACGACAACCGCCCTTGTCAGAACAACCGCGTTTACGTCACAGCGGC
GAGAGAAGGGTCCGGCGAGAGACAACCCCTCGTGCTTCTGTCTTGTCTAC
CTGTCTCAACCGACGGCCGCGCGCGGGCACACGGCAACCACGCCCGCAAG
AAACACTGTTGCACGACCCAGCCCCCGCCTCCCCCCCCCCCGGCACGCGA
GTGGCGGCGGAAAACAACCTACACCCCCCGCCGCGGACAGAAGGTCTATC
ACAAGGACGTCCTCCTCCCCGTCGGCGTCTCTGGAGGCGCGCGCGCCGCC
ACCGCCGGCAGAGGAGGGGGGCACCGTGACGTCGAAGGAACAGCACCGCA
TCGTGGAGCGGGCGAGGAACAAGGGGGCACCCGGAGCACACGGGGCAGAC
GTGGGCGGGCGGTCGTGGGTACAACATGGCCGTTCACGTGGCGTGCGGTG
GTGTTCTCGCGGGCGGGGCTACGCGAGTCTGGGAGGGCGAGTTTCGGAGG
CGAGCGGAGAGATGAGAGAAACGGGCGCGTTGGCCACCGCGACAGCCGGT
GTGTGTCGGATGCTAGCCGGCGGGCCGAGGTCTAGAGGGCACCGCCGGGA
CCCAGCGTCCGCGAGGGCCCACGGGATCTCCCGTTGTCGGCGAAAACGCG
ACGCGAAGGTCGCGAGGGGGGAGCTTCCACCGTCCACCGAGAAAGCCTCC
GCGAGGTGGAGCAAGACCTGCCGCCTTCGCCGCGCGCTAACGACAACCGC
CCTTGTCAGAACAACCGCGTTTACGTCACAGCGGCGAGAGAAGGGTCCGG
CGAGAGACAACCCCTCGTGCTTCTGTCTTGTCTACCTGTCTCAACCGACG
GCCGCGCGCGGGCACACGGCAACCACGCCCGCAAGAAACACTGTTGCACG
ACCCAGCCCCCGCCTCCCCCCCCCCCGGCACGCGAGTGGCGGCGGAAAAC
AACCTACACCCCCCGCCGCG
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