mRNA_H-canaliculatus_F_contig1161.1418.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1161.1418.1
Unique NamemRNA_H-canaliculatus_F_contig1161.1418.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1161.1418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1161contigH-canaliculatus_F_contig1161:8877..12005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_006510.3
Hectar predicted targeting categoryother localisation
Exons2
Model size2725
Cds size1806
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1161.1418.1prot_H-canaliculatus_F_contig1161.1418.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1161 9677..11886 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.4986553-UTR-H-canaliculatus_F_contig1161:8876..96761622928852.4986553-UTR-H-canaliculatus_F_contig1161:8876..9676Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1161 8877..9676 -
1696845589.019586-UTR-H-canaliculatus_F_contig1161:8876..96761696845589.019586-UTR-H-canaliculatus_F_contig1161:8876..9676Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1161 8877..9676 -
1622928852.5480602-UTR-H-canaliculatus_F_contig1161:11886..120051622928852.5480602-UTR-H-canaliculatus_F_contig1161:11886..12005Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1161 11887..12005 -
1696845589.0661588-UTR-H-canaliculatus_F_contig1161:11886..120051696845589.0661588-UTR-H-canaliculatus_F_contig1161:11886..12005Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1161 11887..12005 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.5156548-CDS-H-canaliculatus_F_contig1161:9676..103591622928852.5156548-CDS-H-canaliculatus_F_contig1161:9676..10359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1161 9677..10359 -
1696845589.0402534-CDS-H-canaliculatus_F_contig1161:9676..103591696845589.0402534-CDS-H-canaliculatus_F_contig1161:9676..10359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1161 9677..10359 -
1622928852.5340507-CDS-H-canaliculatus_F_contig1161:10763..118861622928852.5340507-CDS-H-canaliculatus_F_contig1161:10763..11886Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1161 10764..11886 -
1696845589.05533-CDS-H-canaliculatus_F_contig1161:10763..118861696845589.05533-CDS-H-canaliculatus_F_contig1161:10763..11886Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1161 10764..11886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1161.1418.1

>prot_H-canaliculatus_F_contig1161.1418.1 ID=prot_H-canaliculatus_F_contig1161.1418.1|Name=mRNA_H-canaliculatus_F_contig1161.1418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=602bp
MSRRIFTVKLRVTPSVTFVSLVDKAPFLFPWTHAVANYVEIRCDAKSSDD
LPVTGYQQREDLLFTCTAKGFRSVLFVDDSLQGIRGANREQHLYMDEKHD
WIGSDQTSSFKSAEYPAGRDGSCPVDGAVSSGSPTSITTTSSGNIFPTLS
PAPVPTPTAGPVLTAGSYGTTRVPISRPTLDSLVVKAEPKLTTVVLQPVA
HPPSPTAIPSRPVQETAMFGATKLPTRAPVVTPAPLGVTSEPSALIPPTL
NPTPKFVTSITRPVTVTSAPVIATPLAPRPRQSLSPASLDARKPQHPTQD
IAATAPRVKASPPPRSPRPTTFPPAPIAETGEGRTSTPVPGTTSCPALFG
SFAIDTPPTTVGYFTIDTPPPTVEALDPDESVHANNEEWYVGVISVVVDV
GGVLAALAVIAGAFKYFRSNLWRCSLYLNRREREPAEPGMVGEGGTNDGD
GNIADGGGRVVVTGVDDRRQTNASVDRGENAVAGEIVASSFVRSTQTGNG
HTSQGNAGDVFHGTIDDVGGATLHFGSTSGNSADGIVGGADATSTTGGDV
GNVYTVLFTVIATLYQLFRLQAGRLLPLEPEAGSSRNTFAARQQPLANSH
A*
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mRNA from alignment at H-canaliculatus_F_contig1161:8877..12005-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1161.1418.1 ID=mRNA_H-canaliculatus_F_contig1161.1418.1|Name=mRNA_H-canaliculatus_F_contig1161.1418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3129bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1161:8877..12005- (Hapterophycus canaliculatus Oshoro5f female)
GAGACATGGACAAAAGCGCCTTGGTGTTGTAACCTTCAACCTACGGGTGT
GACGCGCGTTTTCTCTGAAACATTTCGTTTTAGTTATCGGGAAAACCGTA
GACGGTTGTGATTCATGATATGTCACGTAGGATATTCACTGTCAAGCTCC
GAGTTACTCCCAGTGTCACATTCGTATCACTTGTCGACAAGGCCCCTTTC
CTGTTTCCGTGGACTCACGCTGTTGCAAATTATGTTGAAATCAGGTGTGA
CGCCAAGAGTTCAGACGACTTGCCTGTGACGGGATACCAGCAAAGAGAGG
ACCTTTTGTTCACCTGCACTGCCAAAGGCTTTAGAAGTGTACTGTTCGTG
GACGACAGCCTTCAGGGAATAAGGGGAGCGAATCGGGAGCAGCACTTGTA
CATGGACGAAAAACATGACTGGATCGGCTCCGACCAAACCAGCAGCTTCA
AATCCGCCGAGTATCCCGCCGGAAGGGACGGATCGTGCCCTGTCGACGGA
GCTGTAAGCAGCGGCTCTCCTACCTCCATCACCACCACCTCGAGCGGCAA
CATCTTTCCCACCCTTTCCCCTGCTCCAGTACCCACCCCAACGGCTGGGC
CTGTACTGACGGCTGGATCTTACGGGACTACTCGGGTACCAATCAGCCGC
CCCACACTGGACTCTCTTGTCGTGAAGGCGGAACCTAAACTTACAACGGT
AGTTCTCCAGCCCGTAGCCCACCCACCCAGCCCTACCGCGATACCGTCAA
GGCCTGTACAGGAGACCGCCATGTTCGGCGCAACAAAGCTCCCCACACGG
GCACCGGTTGTGACTCCGGCGCCTCTCGGTGTGACCTCCGAGCCCTCTGC
TTTGATCCCTCCAACACTGAACCCCACTCCGAAATTTGTCACTTCGATTA
CTAGACCTGTGACGGTAACCAGCGCCCCCGTCATAGCTACGCCCCTTGCA
CCAAGGCCTCGACAGAGTCTTTCTCCCGCGTCCCTCGACGCTCGTAAGCC
ACAACACCCCACGCAAGACATCGCAGCCACCGCTCCCCGTGTCAAAGCTT
CCCCCCCGCCCCGGAGTCCGAGGCCCACCACCTTCCCCCCTGCTCCTATC
GCGGAAACCGGAGAAGGTCGAACGTCTACGCCTGTCCCAGGTACCACATC
CTGTCCAGCCCTGTTTGGATCCTTCGCCATTGACACCCCACCTACAACGG
TCGGATACTTCACCATTGACACTCCACCTCCAACGGTCGAAGGTGAGGGA
GATACAACTCGTGTGTTTGCTCTTGCGGAAGCAATTCTTCATCACTGTCC
TGAGATTACCGGAAAACACACTCGAACAAGCCCATGTTTTGCTTTACCAG
ACGATCCTCTGGCAGGTATCGCGGAATTGATGACCACGACGTTGATAGGC
TCTAGGGGAATGGTACAATTTTCGCTAGCAATCGAAGCGGCACATTACCC
TTAGCTATTGATAGACCCCACCACTTGCGCCTTGAGTGCATATTTCCTAT
CTTGCTTGACTACCGTAGGCCCATTCCTTCCTAAGCCCAACCCGACCGTT
CTCTCCAACACAAACTGCTGCCCACGTCAAGTTCGCTTAACAGTACAAGT
ACCGCATTCCCGACCGGGTCGTAAATCGCCGCGTTGTGTCTCCAAGCGTT
AGATCCGGACGAGTCAGTGCACGCCAACAATGAAGAATGGTACGTGGGCG
TCATCAGCGTTGTTGTCGACGTGGGTGGAGTTCTCGCGGCTCTCGCTGTC
ATCGCAGGCGCTTTCAAGTACTTTCGGTCGAATCTCTGGCGCTGCAGCCT
CTACCTCAACCGACGTGAGCGGGAGCCAGCGGAGCCCGGAATGGTGGGAG
AGGGTGGCACAAACGATGGTGACGGCAATATTGCCGATGGTGGCGGGCGT
GTCGTCGTCACCGGTGTCGACGACCGTCGCCAAACGAACGCCTCTGTCGA
TCGTGGCGAGAACGCGGTTGCTGGTGAGATAGTTGCCAGTAGTTTCGTCA
GAAGCACTCAAACGGGCAACGGTCACACAAGTCAAGGCAACGCTGGCGAC
GTTTTCCACGGTACCATCGACGATGTCGGTGGTGCCACCCTCCACTTTGG
GTCCACGAGCGGAAATAGTGCCGACGGTATTGTTGGCGGTGCCGATGCCA
CCAGCACAACCGGCGGCGACGTCGGGAATGTCTACACGGTTTTATTCACA
GTGATCGCAACTTTGTATCAACTATTTCGGCTTCAAGCGGGCCGCTTACT
ACCACTGGAGCCAGAGGCGGGGAGCTCTAGGAACACATTTGCAGCTCGAC
AGCAGCCGCTGGCGAATTCTCACGCGTGAATAGAGCAGTACGTTATAGAA
ACTGTATGCATCTGTGATGTTTGGCGAGTAATTCGCCAAAATTGCCAAAA
TTTGAGGGATGTATTTGTACACGTTGAAACAGATCGAAAGGTGCGAGTAA
CAAGCAGAGAAGAAAATTGAGAGCGCAGCGGATACTGAGGTTGAAAATCC
CTCTCTCAACATCGAGGCCGCCGTAGTATAGGGGTGCCTGAGAGAGAAAG
CATATCTAGAAAGAGAGGTGGCAAGTGCACATCGCTCCCGCATCGGGGAG
GTATGCTTATATAAGAGCACGCGGCCGAGAAAACAGAACGATGAAATTCG
CCGGCCGGGGAGAAGCGCAAGCCTTGGTGAGGGATGTACCACAGTAGTTG
GTGATACAAAGAGCAGGGGAAATTGTAAGGCGGAGGAAAGGTGCGGAAAC
CGTGATGCGTCTGGAACGTGGCATTGAACGGCGTCGACAACGAAAAGGTG
ACTGCAAGCAGCGAAATCCCACCTTATCGAATTCCATCCGGACAAAGGAA
GTTCACGAGGCCAAGCGTTCATCTCCTGGAAAAGAGGTTAAGGGTGTCCG
CGGTTGGAGTTTTGTGAGCACTTCGAGTCCGCACACAAGAGTTCCAGTTC
GGGGGTAGATTCAGCACGCACGTGTTGTGAAGCAGCTACAAAACTAGAGA
ACGGCGACATACGGCGATATCTCCTTTTTCCTGACCTTCGTCAGCGCTCT
CGCGGTACGCAACCAGAGCAATATTCAATGCTATCAGGTAGGTCAGATCG
CACTCGGGACCCAATGCAGAGAACACATA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1161:8877..12005-

>mRNA_H-canaliculatus_F_contig1161.1418.1 ID=mRNA_H-canaliculatus_F_contig1161.1418.1|Name=mRNA_H-canaliculatus_F_contig1161.1418.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3612bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1161:8877..12005- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCACGTAGGATATTCACTGTCAAGCTCCGAGTTACTCCCAGTGTCAC
ATTCGTATCACTTGTCGACAAGGCCCCTTTCCTGTTTCCGTGGACTCACG
CTGTTGCAAATTATGTTGAAATCAGGTGTGACGCCAAGAGTTCAGACGAC
TTGCCTGTGACGGGATACCAGCAAAGAGAGGACCTTTTGTTCACCTGCAC
TGCCAAAGGCTTTAGAAGTGTACTGTTCGTGGACGACAGCCTTCAGGGAA
TAAGGGGAGCGAATCGGGAGCAGCACTTGTACATGGACGAAAAACATGAC
TGGATCGGCTCCGACCAAACCAGCAGCTTCAAATCCGCCGAGTATCCCGC
CGGAAGGGACGGATCGTGCCCTGTCGACGGAGCTGTAAGCAGCGGCTCTC
CTACCTCCATCACCACCACCTCGAGCGGCAACATCTTTCCCACCCTTTCC
CCTGCTCCAGTACCCACCCCAACGGCTGGGCCTGTACTGACGGCTGGATC
TTACGGGACTACTCGGGTACCAATCAGCCGCCCCACACTGGACTCTCTTG
TCGTGAAGGCGGAACCTAAACTTACAACGGTAGTTCTCCAGCCCGTAGCC
CACCCACCCAGCCCTACCGCGATACCGTCAAGGCCTGTACAGGAGACCGC
CATGTTCGGCGCAACAAAGCTCCCCACACGGGCACCGGTTGTGACTCCGG
CGCCTCTCGGTGTGACCTCCGAGCCCTCTGCTTTGATCCCTCCAACACTG
AACCCCACTCCGAAATTTGTCACTTCGATTACTAGACCTGTGACGGTAAC
CAGCGCCCCCGTCATAGCTACGCCCCTTGCACCAAGGCCTCGACAGAGTC
TTTCTCCCGCGTCCCTCGACGCTCGTAAGCCACAACACCCCACGCAAGAC
ATCGCAGCCACCGCTCCCCGTGTCAAAGCTTCCCCCCCGCCCCGGAGTCC
GAGGCCCACCACCTTCCCCCCTGCTCCTATCGCGGAAACCGGAGAAGGTC
GAACGTCTACGCCTGTCCCAGGTACCACATCCTGTCCAGCCCTGTTTGGA
TCCTTCGCCATTGACACCCCACCTACAACGGTCGGATACTTCACCATTGA
CACTCCACCTCCAACGGTCGAAGATGTCACGTAGGATATTCACTGTCAAG
CTCCGAGTTACTCCCAGTGTCACATTCGTATCACTTGTCGACAAGGCCCC
TTTCCTGTTTCCGTGGACTCACGCTGTTGCAAATTATGTTGAAATCAGGT
GTGACGCCAAGAGTTCAGACGACTTGCCTGTGACGGGATACCAGCAAAGA
GAGGACCTTTTGTTCACCTGCACTGCCAAAGGCTTTAGAAGTGTACTGTT
CGTGGACGACAGCCTTCAGGGAATAAGGGGAGCGAATCGGGAGCAGCACT
TGTACATGGACGAAAAACATGACTGGATCGGCTCCGACCAAACCAGCAGC
TTCAAATCCGCCGAGTATCCCGCCGGAAGGGACGGATCGTGCCCTGTCGA
CGGAGCTGTAAGCAGCGGCTCTCCTACCTCCATCACCACCACCTCGAGCG
GCAACATCTTTCCCACCCTTTCCCCTGCTCCAGTACCCACCCCAACGGCT
GGGCCTGTACTGACGGCTGGATCTTACGGGACTACTCGGGTACCAATCAG
CCGCCCCACACTGGACTCTCTTGTCGTGAAGGCGGAACCTAAACTTACAA
CGGTAGTTCTCCAGCCCGTAGCCCACCCACCCAGCCCTACCGCGATACCG
TCAAGGCCTGTACAGGAGACCGCCATGTTCGGCGCAACAAAGCTCCCCAC
ACGGGCACCGGTTGTGACTCCGGCGCCTCTCGGTGTGACCTCCGAGCCCT
CTGCTTTGATCCCTCCAACACTGAACCCCACTCCGAAATTTGTCACTTCG
ATTACTAGACCTGTGACGGTAACCAGCGCCCCCGTCATAGCTACGCCCCT
TGCACCAAGGCCTCGACAGAGTCTTTCTCCCGCGTCCCTCGACGCTCGTA
AGCCACAACACCCCACGCAAGACATCGCAGCCACCGCTCCCCGTGTCAAA
GCTTCCCCCCCGCCCCGGAGTCCGAGGCCCACCACCTTCCCCCCTGCTCC
TATCGCGGAAACCGGAGAAGGTCGAACGTCTACGCCTGTCCCAGGTACCA
CATCCTGTCCAGCCCTGTTTGGATCCTTCGCCATTGACACCCCACCTACA
ACGGTCGGATACTTCACCATTGACACTCCACCTCCAACGGTCGAAGCGTT
AGATCCGGACGAGTCAGTGCACGCCAACAATGAAGAATGGTACGTGGGCG
TCATCAGCGTTGTTGTCGACGTGGGTGGAGTTCTCGCGGCTCTCGCTGTC
ATCGCAGGCGCTTTCAAGTACTTTCGGTCGAATCTCTGGCGCTGCAGCCT
CTACCTCAACCGACGTGAGCGGGAGCCAGCGGAGCCCGGAATGGTGGGAG
AGGGTGGCACAAACGATGGTGACGGCAATATTGCCGATGGTGGCGGGCGT
GTCGTCGTCACCGGTGTCGACGACCGTCGCCAAACGAACGCCTCTGTCGA
TCGTGGCGAGAACGCGGTTGCTGGTGAGATAGTTGCCAGTAGTTTCGTCA
GAAGCACTCAAACGGGCAACGGTCACACAAGTCAAGGCAACGCTGGCGAC
GTTTTCCACGGTACCATCGACGATGTCGGTGGTGCCACCCTCCACTTTGG
GTCCACGAGCGGAAATAGTGCCGACGGTATTGTTGGCGGTGCCGATGCCA
CCAGCACAACCGGCGGCGACGTCGGGAATGTCTACACGGTTTTATTCACA
GTGATCGCAACTTTGTATCAACTATTTCGGCTTCAAGCGGGCCGCTTACT
ACCACTGGAGCCAGAGGCGGGGAGCTCTAGGAACACATTTGCAGCTCGAC
AGCAGCCGCTGGCGAATTCTCACGCGTGACGTTAGATCCGGACGAGTCAG
TGCACGCCAACAATGAAGAATGGTACGTGGGCGTCATCAGCGTTGTTGTC
GACGTGGGTGGAGTTCTCGCGGCTCTCGCTGTCATCGCAGGCGCTTTCAA
GTACTTTCGGTCGAATCTCTGGCGCTGCAGCCTCTACCTCAACCGACGTG
AGCGGGAGCCAGCGGAGCCCGGAATGGTGGGAGAGGGTGGCACAAACGAT
GGTGACGGCAATATTGCCGATGGTGGCGGGCGTGTCGTCGTCACCGGTGT
CGACGACCGTCGCCAAACGAACGCCTCTGTCGATCGTGGCGAGAACGCGG
TTGCTGGTGAGATAGTTGCCAGTAGTTTCGTCAGAAGCACTCAAACGGGC
AACGGTCACACAAGTCAAGGCAACGCTGGCGACGTTTTCCACGGTACCAT
CGACGATGTCGGTGGTGCCACCCTCCACTTTGGGTCCACGAGCGGAAATA
GTGCCGACGGTATTGTTGGCGGTGCCGATGCCACCAGCACAACCGGCGGC
GACGTCGGGAATGTCTACACGGTTTTATTCACAGTGATCGCAACTTTGTA
TCAACTATTTCGGCTTCAAGCGGGCCGCTTACTACCACTGGAGCCAGAGG
CGGGGAGCTCTAGGAACACATTTGCAGCTCGACAGCAGCCGCTGGCGAAT
TCTCACGCGTGA
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