mRNA_H-canaliculatus_F_contig1161.1417.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1161.1417.1
Unique NamemRNA_H-canaliculatus_F_contig1161.1417.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1161.1417.1 vs. uniprot
Match: D8LTN6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN6_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 2.590e-39
Identity = 93/149 (62.42%), Postives = 111/149 (74.50%), Query Frame = 2 
Query: 1487 LAPILLASLSRLRRAEGVFVSRGGGVAGLPPSVELPISGGAGEGDGNQENQPPIGEVVGAGAVGVLAGQVVFQSLVISVGLGVASMSVAASSADAPGEIARSSGRMAVAVLDRVTQLNSRYQLTDRVVDGAKMAGWRLRKFDQEHAVVH 1933
            L   LLASL    RAE V + RGGG +G PPS +   +G  G  D   ++ PPI EVVGAGAVGVLAGQ+VFQSL+IS GLGV +M++AASSAD  G+IARSSGRMAVA  DR   LN RY  T+R+V+GAK+ GWRL++FDQEHAVVH
Sbjct:    7 LLSALLASLVHFPRAERVLLFRGGGPSGSPPS-KTRATGSRGLSD--DDDPPPIREVVGAGAVGVLAGQLVFQSLLISAGLGVTAMTIAASSADGAGDIARSSGRMAVAAFDRGADLNERYHFTERLVNGAKITGWRLKQFDQEHAVVH 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1161.1417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTN6_ECTSI2.590e-3962.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1161contigH-canaliculatus_F_contig1161:2913..7382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_003410.1
Exons4
Model size2273
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1161.1417.1prot_H-canaliculatus_F_contig1161.1417.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1161 4369..7108 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.5889344-UTR-H-canaliculatus_F_contig1161:2912..43681622928852.5889344-UTR-H-canaliculatus_F_contig1161:2912..4368Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1161 2913..4368 +
1696845589.0765405-UTR-H-canaliculatus_F_contig1161:2912..43681696845589.0765405-UTR-H-canaliculatus_F_contig1161:2912..4368Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1161 2913..4368 +
1622928852.6879-UTR-H-canaliculatus_F_contig1161:7108..73821622928852.6879-UTR-H-canaliculatus_F_contig1161:7108..7382Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1161 7109..7382 +
1696845589.1275978-UTR-H-canaliculatus_F_contig1161:7108..73821696845589.1275978-UTR-H-canaliculatus_F_contig1161:7108..7382Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1161 7109..7382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.6053543-CDS-H-canaliculatus_F_contig1161:4368..46001622928852.6053543-CDS-H-canaliculatus_F_contig1161:4368..4600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1161 4369..4600 +
1696845589.0856533-CDS-H-canaliculatus_F_contig1161:4368..46001696845589.0856533-CDS-H-canaliculatus_F_contig1161:4368..4600Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1161 4369..4600 +
1622928852.616443-CDS-H-canaliculatus_F_contig1161:5185..52681622928852.616443-CDS-H-canaliculatus_F_contig1161:5185..5268Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1161 5186..5268 +
1696845589.0953145-CDS-H-canaliculatus_F_contig1161:5185..52681696845589.0953145-CDS-H-canaliculatus_F_contig1161:5185..5268Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1161 5186..5268 +
1622928852.6272357-CDS-H-canaliculatus_F_contig1161:6099..61921622928852.6272357-CDS-H-canaliculatus_F_contig1161:6099..6192Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1161 6100..6192 +
1696845589.1052477-CDS-H-canaliculatus_F_contig1161:6099..61921696845589.1052477-CDS-H-canaliculatus_F_contig1161:6099..6192Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1161 6100..6192 +
1622928852.6424875-CDS-H-canaliculatus_F_contig1161:6973..71081622928852.6424875-CDS-H-canaliculatus_F_contig1161:6973..7108Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1161 6974..7108 +
1696845589.1169956-CDS-H-canaliculatus_F_contig1161:6973..71081696845589.1169956-CDS-H-canaliculatus_F_contig1161:6973..7108Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1161 6974..7108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1161.1417.1

>prot_H-canaliculatus_F_contig1161.1417.1 ID=prot_H-canaliculatus_F_contig1161.1417.1|Name=mRNA_H-canaliculatus_F_contig1161.1417.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=181bp
MRCSPSSFPLLAPILLASLSRLRRAEGVFVSRGGGVAGLPPSVELPISGG
AGEGDGNQENQPPIGEVVGAGAVGVLAGQVVFQSLVISVGLGVASMSVAA
SSADAPGEIARSSGRMAVAVLDRVTQLNSRYQLTDRVVDGAKMAGWRLRK
FDQEHAVVHRATQGTKKAWQDAQEVRATIV*
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mRNA from alignment at H-canaliculatus_F_contig1161:2913..7382+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1161.1417.1 ID=mRNA_H-canaliculatus_F_contig1161.1417.1|Name=mRNA_H-canaliculatus_F_contig1161.1417.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4470bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1161:2913..7382+ (Hapterophycus canaliculatus Oshoro5f female)
TCATCATCCATCGGGCTCAAAGGAGCAACAGGTGAACATCCGACAAAAAT
ATCGTAGCATCTTTGGACCATGCTTGCTTCCAGGTACTAATGTCGAGCCG
TTGCTAGCAATGGGCACCGAGGAAGTGAAGAGTGTACACAGAAGAGACCA
GAGAAAAGAGAAAATCGGCTAGCTTGAACAAGGGCCTCGCCAACTGCAGC
AAAGCGCGCTGCCTGTCCTCCTCGCTGTGGTGACTGCCTTAGTCCGCCAT
CCGTCGCTTGTCACTCCAGACTTCTGGTTCCCCGCTAGTGATGCCTACCT
CTCTCTGTGTGTGTCGCGCTCCCGACGAGCTTCGCTTTGGGTCTTTGGCA
TGGGTGCAAAAAAATAGTGGAGCAGTCTCCATCCCGGAAAGTTGAACCTT
CCCAATCTCTGTTGCAGTGCGCTCTCCCTCGGCAGCGGAGTCTCTATAGG
GATGACGATTACGGATCGCACTCCTTATCACATATACCGCTGAGTCATGT
ACGACCACCGGAGTCAGCTTAATTTCACGGTACAGCAGTGCCGGTGAAAG
TCGCGACAACCCCTACCTACCGTGTACCGCCTGCAAGTATCGCATCACCG
GATCATTATTTTGCGTTTTCCCTCCTTCGATTGGTCGTTGATGCGTTAAT
TCCCCCGCAACTCCAAAGTGAAGCTCGTGCTTTGTGGTATGTACTGTAGC
AGTTCTGCAAAACAACCGCTGTAGCACAGGGCCCACCCGACGGCCTTCAG
AGAGGTAGTGTTGCACAGAGTTCCCTATCAGTAAGTGCGAGCAACCTTGG
GCTAGAAGTGCATGGCTGACCATCGAATACTGCGCGGATCCAACTGCGGC
GGGATACCTTTCCGGATACAGCATTTGTACCATCTTCAGGTAGCTACGAG
TACAGCAGTAGGGAGGGAAACAAACAGTAGCTACAATATCCAAAAACAAT
ATTTCTGTGCCACTTCGCTCACGTACGTGTGTCGTCCGCTCTTGGGTGGC
GCCAGAAGGACAGGAACATCGCACTTTGTTGTATTTCCCGTTCGTCTCTT
GACGCGGGCGCGACCCTGTCCGCCCTGGGTTTTCTGGGTTTTCTTCGCAG
AACGTTTGTTGCCTTTCTGCCCTACAGCGACTCGCTCTCGACCATTTGGG
TTTAGCTCGAGTAGCTCCTGTGAACTGCAGGACAGCGGCGAAGTGACCCT
CGCCCTTACGACACACTCACGATCATGGCAAAGCTCACTCTTTCTTGTGA
GTTTTGCTGTTGCCACGCGTGCGTCTTGACCAGGCCCTACCCAAACCAGG
AAGTTCGCTCGTTATTTTCGACGCGTCTTGTTTTCTGCGCACCCCTCACA
GGCAAGAAACACCCTTGGCACGACGGCCGCGATCCCGCACACCAAAAGAG
ATAGACCCCCCTCCCTGACGTGTAGGCGACGTGTAGGTTCTTCGAGCCGA
GCTCGGATGCGGTGCAGCCCATCCTCTTTTCCGCTCTTGGCACCCATATT
GCTGGCCAGCCTTTCACGGCTCCGGAGAGCAGAAGGCGTGTTTGTTTCGA
GGGGGGGCGGGGTGGCAGGTTTACCCCCGTCAGTGGAACTTCCGATTTCT
GGCGGTGCCGGCGAGGGCGATGGCAACCAGGAAAACCAACCGCCGATTGG
GGAGGTCGTCGGAGCCGGAGCTGTCGGGGTATTGGCAGGTGCGTGCCACC
TGGCGATGACGCTTGTTGACGCTCGCTGCCACACCTCCCACGGCCTTCTT
TCTGCCAAGTGTATTCTATCGATACGGCGCAGAAGACGAAGATCGTGGAA
GGCTCTCGCGTTGTTTCCATCTTTTAGCGATGCCTTCGTCCATGATGGCG
TTGTGGCATGTCCTTGTTTCCCTTTATTTTCATCCGATAGTTCTTCTCGT
TGCGCTTTGCACAAGTATTGCCGGGAACATCGGCAACCGGCAAGCGCCAC
ACATCGTCGGGCGTTGCGATAGACTGGAGAGGTGGCATGCCCAGATCCTC
TTCTCGGCGTCTCTGGCCTATACAGCAGTCCCCGAGAGTACCGCTTTTCT
GGTGCGACTAATCATCCATGCGTTACGCCTCTTTTGACCTACTCGCGCGT
ATTCTCGTAATCACTGTGTCCTGACCGTGTCACGAGTGGCGGTTCTCCCA
AGGAGACGGGCGCGCCGTTGGCGTACAACAAAATATTGAAGACATGTTTT
GTGGCGTCCATTTTCAATCAGCACATGTCCGTGTTCCTCATTCCTCGTGT
TTGTTTGCTTGCATCGTCGGCAGGTCAAGTAGTCTTCCAGTCGCTCGTTA
TCTCGGTGGGCCTCGGCGTTGCATCGATGAGTGTCGCAGCCAGCTCGGCC
GATGCGGTGAGGATTCCAGCCATGTTCCCAACACCAATCTTGCTCGGTTT
TCATGTTTGGAAACGTTGTTCGCTGTCCTCCCAGTGCACCAGTCCCTCCA
GCTGTGGCTTTATGTACAAGTTCATTTGTCCATTTGTAGATATTCAAATA
AAGGCCTACTCGCTCGAACCGTGTCGGTAGAACGGGTGCCGCAGACAAGC
TGTCCGCCCTATTTCTTTCATGGCCGTACGTTAGGAAGAGGAGGTGCTGT
GGATGTGTCGTCCGATGGCGGACATGCTCTCGTAGCTTCTGCGATCAATT
TTGTGGGTTGAGAGGCGAAGGCAAGGCGGGATCACGGGGAAGCAAACGAC
CCCCGGCTGTATGCGCTCTCCATGATTTGCGAGTCGATTTCGTATTTTTT
TGTGAGGATTGTTGTCGAAAAGTGGGGGACGCAAGACGGCCTTTCTTTTC
ACTCGAGCGATCAAATCCGGATCTTCCGAGTGACCGGAATTTCCATCGAG
GCCAGCACGCATCGCTGGCAACGCGTATGTGAACACCAATATGGAAAACC
TTTGAATTTTTTATTTTGAACCACACGTGTGCGATGCGATCGTCAAAGGA
CTTTTTGATTCAAGATCCCGCGCAAAGCTTCCCCAGAAACACCCCGTGAT
GGTGACCACCTGCAGCCTTTTCAGGCCGAACATCGCTGCCGTGCTACCTT
AACTCAGTTTGGCTATTATAGAGCCCTCGTAAGGCATACCACAAGCTACT
AATAGCTGCACTTTCATTCATACGTCACATTTCCGTTGCTTTCCGCTGAA
CTTCGCGTGTGTGCATCCGGTCGTCTGGCCAACGCAGCCAGGGGAGATCG
CCAGATCGTCGGGGAGGATGGCGGTTGCGGTGCTCGACAGGGTCACGCAG
CTGAACAGTAGATACCAACTCACGGACAGGGTGAGATGAGGCCGCTTGGT
TGGTCGGTCGGACGGGCGTTCATCTTTGGATCGATGAGGGGAGAGAGTCA
CCTCTGTCATGTTTTCCGAGAGTGAGAGACAAAGAGCTCAACAAAATGGG
TTGTTAAGGCTGGTGCTTGTCAAGACAGTTTGGTTGGTCAATGCCCCACA
GTCTGGTACATCGGCACAGGCGAGGTTGGTCGTTTTGCTTGTTCCTCAAG
CGTCCATACCGGCGGTGTTTCGGGTGTAGGAAACGCTGTGAACTGGACCA
GCCATGCACTGACCTGGGTTGAAACAAATCGAGCGTGTGAAAACCACGGT
AAGGGCTTCGCGGCCTTCCACATGGCCGCAGGGCTAGCCCGGTAAGGGGT
GTCATCGCCGCGGATGGGGGCACGAACCTGCAGGACCGAAAAAAAGGGTA
CTTCTCGGGTTATCCCCGGACATGGTGTTCCTGGGGGAAAGAGTCTAAGC
GTGTATTGATGCCGTTTGTGTTTTGCGTACATTTATGTTGTGTCAAGAAC
CCTGACCGGGAGCTTACCTCGCTGCATATCGGAGGAAAACAGATACAAGT
CGCTTGGAGGCGCACTCTCACTGCGCTTTGGCCGGCGCGGTCCTACCCCT
GCCGCTGTCGCCCCCCCCCGTTGCTCCAGCCGCTTCCGCCACTCGTGCTC
CTGCTGTTACTGCTGCTCCTGCTGGGGCTACGATCGCCTTTGTTGTAATT
TTCGTTGTTGTTGTCATCGCTTCTATACTTACTTTGTCGTTTCTCTCGGG
GACTTGGTCAGGTCGTGGACGGTGCGAAGATGGCGGGGTGGAGACTGAGG
AAATTCGACCAGGAACACGCTGTGGTGCACCGAGCGACCCAGGGTACCAA
GAAGGCTTGGCAGGATGCGCAGGAGGTGCGCGCGACGATTGTGTAACTGC
CACGGCCTGCATTCCTCTCTTGGTGTTTCGCAGGGTAAACCGGCCTTCTT
CATGCTATACCCCTACAATTTCGAGTGTCGCCTATGATCTGCTTGATCTT
GTTTCTACATCGAAGCATCAGACCGTGTAGTCCACACGCCCGACAACCGC
CATGATCACGATAACGTCTGAAACATGATGGCAGTTCAACGAGGCGCACG
GAGTGACGGCGAGGGCGGGAGAAGCGATAAGCTCGAGCCTCGACAAGCTC
ACGGAGGTGTTGACCCCACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1161:2913..7382+

>mRNA_H-canaliculatus_F_contig1161.1417.1 ID=mRNA_H-canaliculatus_F_contig1161.1417.1|Name=mRNA_H-canaliculatus_F_contig1161.1417.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1086bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1161:2913..7382+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGTGCAGCCCATCCTCTTTTCCGCTCTTGGCACCCATATTGCTGGC
CAGCCTTTCACGGCTCCGGAGAGCAGAAGGCGTGTTTGTTTCGAGGGGGG
GCGGGGTGGCAGGTTTACCCCCGTCAGTGGAACTTCCGATTTCTGGCGGT
GCCGGCGAGGGCGATGGCAACCAGGAAAACCAACCGCCGATTGGGGAGGT
CGTCGGAGCCGGAGCTGTCGGGGTATTGGCAGATGCGGTGCAGCCCATCC
TCTTTTCCGCTCTTGGCACCCATATTGCTGGCCAGCCTTTCACGGCTCCG
GAGAGCAGAAGGCGTGTTTGTTTCGAGGGGGGGCGGGGTGGCAGGTTTAC
CCCCGTCAGTGGAACTTCCGATTTCTGGCGGTGCCGGCGAGGGCGATGGC
AACCAGGAAAACCAACCGCCGATTGGGGAGGTCGTCGGAGCCGGAGCTGT
CGGGGTATTGGCAGGTCAAGTAGTCTTCCAGTCGCTCGTTATCTCGGTGG
GCCTCGGCGTTGCATCGATGAGTGTCGCAGCCAGCTCGGCCGATGCGGTC
AAGTAGTCTTCCAGTCGCTCGTTATCTCGGTGGGCCTCGGCGTTGCATCG
ATGAGTGTCGCAGCCAGCTCGGCCGATGCGCCAGGGGAGATCGCCAGATC
GTCGGGGAGGATGGCGGTTGCGGTGCTCGACAGGGTCACGCAGCTGAACA
GTAGATACCAACTCACGGACAGGCCAGGGGAGATCGCCAGATCGTCGGGG
AGGATGGCGGTTGCGGTGCTCGACAGGGTCACGCAGCTGAACAGTAGATA
CCAACTCACGGACAGGGTCGTGGACGGTGCGAAGATGGCGGGGTGGAGAC
TGAGGAAATTCGACCAGGAACACGCTGTGGTGCACCGAGCGACCCAGGGT
ACCAAGAAGGCTTGGCAGGATGCGCAGGAGGTGCGCGCGACGATTGTGTA
AGTCGTGGACGGTGCGAAGATGGCGGGGTGGAGACTGAGGAAATTCGACC
AGGAACACGCTGTGGTGCACCGAGCGACCCAGGGTACCAAGAAGGCTTGG
CAGGATGCGCAGGAGGTGCGCGCGACGATTGTGTAA
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